; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017104 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017104
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr5:215921..216676
RNA-Seq ExpressionLag0017104
SyntenyLag0017104
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-3335.62Show/hide
Query:  KEKDALWRRLISIKY-GVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIYN-IGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLT
        +EKD+LW  +IS KY G    +  P      + K PW+ I K  G   N    ++  G+   FW   WI S +L + +P LY LS  + A I+E  +P T
Subjt:  KEKDALWRRLISIKY-GVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIYN-IGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLT

Query:  GDWNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKLASR---ANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSD
         DWNLH  R LND EI  W  L   L   +    ++  +W   + G ++  S  ++L S     N    + Y  LWK  +PKK KFF+W L H  INT+D
Subjt:  GDWNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKLASR---ANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSD

Query:  VVQQKYPGLSLSPSCCNMCIRNYETQIHLFSIC
        V+Q++ P   L PS C +   + E   H+F  C
Subjt:  VVQQKYPGLSLSPSCCNMCIRNYETQIHLFSIC

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.8e-4039.15Show/hide
Query:  EKDALWRRLISIKYGVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIY-NIGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLTGD
        EKD LW+RLI  KY   K    P +    ++  PWK++ +     Y NI  KV  G+   FW D W G++ L    P L+ LS  K+  ++EF NP + D
Subjt:  EKDALWRRLISIKYGVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIY-NIGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLTGD

Query:  WNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKLA----SRANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSDV
        W+LH++R L D E   W  +   L +          +WNL  +  F T S+ + +A    S ANF + +LY  LWK   PKK KFFIW L H CINT+D 
Subjt:  WNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKLA----SRANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSDV

Query:  VQQKYPGLSLSPSCCNMCIRNYETQIHLFSICPYA
        +Q++ P  +LSP+ C MC ++ E   HLF  CPY+
Subjt:  VQQKYPGLSLSPSCCNMCIRNYETQIHLFSICPYA

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.2e-3838.72Show/hide
Query:  EKDALWRRLISIKYGVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIY-NIGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLTGD
        EK+ LW+RLI  KY   K    P      ++  PWK++       Y NIG KV  G+   FW D W G+S L  + P L+ LS  K+  +++  NP   D
Subjt:  EKDALWRRLISIKYGVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIY-NIGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLTGD

Query:  WNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKL----ASRANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSDV
        WN+H++R L D E   W  +   L +          +W L  +  F T S+ K L    AS  NF +  LY  LWK   PKK KFFIW L H CINT+D 
Subjt:  WNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKL----ASRANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSDV

Query:  VQQKYPGLSLSPSCCNMCIRNYETQIHLFSICPYA
        +Q++ P  +LSP+ C MC ++ E   HLF  CPY+
Subjt:  VQQKYPGLSLSPSCCNMCIRNYETQIHLFSICPYA

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.8e-3838.72Show/hide
Query:  EKDALWRRLISIKYGVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIY-NIGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLTGD
        EK+ LW+RLI  KY   K    P      ++  PWK++       Y NIG KV  G+   FW D W G+S L    P L+ LS  K+  +++  NP   D
Subjt:  EKDALWRRLISIKYGVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIY-NIGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLTGD

Query:  WNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKL----ASRANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSDV
        WN+H++R L D E   W  +   L +          +W L  +  F T S+ K L    AS  NF +  LY  LWK   PKK KFFIW L H CINT+D 
Subjt:  WNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKL----ASRANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSDV

Query:  VQQKYPGLSLSPSCCNMCIRNYETQIHLFSICPYA
        +Q++ P  +LSP+ C MC ++ E   HLF  CPY+
Subjt:  VQQKYPGLSLSPSCCNMCIRNYETQIHLFSICPYA

TYK00226.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-3335.62Show/hide
Query:  KEKDALWRRLISIKY-GVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIYN-IGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLT
        +EKD+LW  +IS KY G    +  P      + K PW+ I K  G   N    ++  G+   FW   WI S +L + +P LY LS  + A I+E  +P T
Subjt:  KEKDALWRRLISIKY-GVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIYN-IGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLT

Query:  GDWNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKLASR---ANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSD
         DWNLH  R LND EI  W  L   L   +    ++  +W   + G ++  S  ++L S     N    + Y  LWK  +PKK KFF+W L H  INT+D
Subjt:  GDWNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKLASR---ANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSD

Query:  VVQQKYPGLSLSPSCCNMCIRNYETQIHLFSIC
        V+Q++ P   L PS C +   + E   H+F  C
Subjt:  VVQQKYPGLSLSPSCCNMCIRNYETQIHLFSIC

TrEMBL top hitse value%identityAlignment
A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein7.9e-3435.62Show/hide
Query:  KEKDALWRRLISIKY-GVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIYN-IGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLT
        +EKD+LW  +IS KY G    +  P      + K PW+ I K  G   N    ++  G+   FW   WI S +L + +P LY LS  + A I+E  +P T
Subjt:  KEKDALWRRLISIKY-GVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIYN-IGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLT

Query:  GDWNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKLASR---ANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSD
         DWNLH  R LND EI  W  L   L   +    ++  +W   + G ++  S  ++L S     N    + Y  LWK  +PKK KFF+W L H  INT+D
Subjt:  GDWNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKLASR---ANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSD

Query:  VVQQKYPGLSLSPSCCNMCIRNYETQIHLFSIC
        V+Q++ P   L PS C +   + E   H+F  C
Subjt:  VVQQKYPGLSLSPSCCNMCIRNYETQIHLFSIC

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein3.3e-4039.15Show/hide
Query:  EKDALWRRLISIKYGVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIY-NIGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLTGD
        EKD LW+RLI  KY   K    P +    ++  PWK++ +     Y NI  KV  G+   FW D W G++ L    P L+ LS  K+  ++EF NP + D
Subjt:  EKDALWRRLISIKYGVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIY-NIGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLTGD

Query:  WNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKLA----SRANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSDV
        W+LH++R L D E   W  +   L +          +WNL  +  F T S+ + +A    S ANF + +LY  LWK   PKK KFFIW L H CINT+D 
Subjt:  WNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKLA----SRANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSDV

Query:  VQQKYPGLSLSPSCCNMCIRNYETQIHLFSICPYA
        +Q++ P  +LSP+ C MC ++ E   HLF  CPY+
Subjt:  VQQKYPGLSLSPSCCNMCIRNYETQIHLFSICPYA

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.1e-3838.72Show/hide
Query:  EKDALWRRLISIKYGVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIY-NIGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLTGD
        EK+ LW+RLI  KY   K    P      ++  PWK++       Y NIG KV  G+   FW D W G+S L  + P L+ LS  K+  +++  NP   D
Subjt:  EKDALWRRLISIKYGVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIY-NIGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLTGD

Query:  WNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKL----ASRANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSDV
        WN+H++R L D E   W  +   L +          +W L  +  F T S+ K L    AS  NF +  LY  LWK   PKK KFFIW L H CINT+D 
Subjt:  WNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKL----ASRANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSDV

Query:  VQQKYPGLSLSPSCCNMCIRNYETQIHLFSICPYA
        +Q++ P  +LSP+ C MC ++ E   HLF  CPY+
Subjt:  VQQKYPGLSLSPSCCNMCIRNYETQIHLFSICPYA

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.8e-3838.72Show/hide
Query:  EKDALWRRLISIKYGVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIY-NIGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLTGD
        EK+ LW+RLI  KY   K    P      ++  PWK++       Y NIG KV  G+   FW D W G+S L    P L+ LS  K+  +++  NP   D
Subjt:  EKDALWRRLISIKYGVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIY-NIGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLTGD

Query:  WNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKL----ASRANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSDV
        WN+H++R L D E   W  +   L +          +W L  +  F T S+ K L    AS  NF +  LY  LWK   PKK KFFIW L H CINT+D 
Subjt:  WNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKL----ASRANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSDV

Query:  VQQKYPGLSLSPSCCNMCIRNYETQIHLFSICPYA
        +Q++ P  +LSP+ C MC ++ E   HLF  CPY+
Subjt:  VQQKYPGLSLSPSCCNMCIRNYETQIHLFSICPYA

A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein7.9e-3435.62Show/hide
Query:  KEKDALWRRLISIKY-GVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIYN-IGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLT
        +EKD+LW  +IS KY G    +  P      + K PW+ I K  G   N    ++  G+   FW   WI S +L + +P LY LS  + A I+E  +P T
Subjt:  KEKDALWRRLISIKY-GVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIYN-IGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLT

Query:  GDWNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKLASR---ANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSD
         DWNLH  R LND EI  W  L   L   +    ++  +W   + G ++  S  ++L S     N    + Y  LWK  +PKK KFF+W L H  INT+D
Subjt:  GDWNLHLSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKLASR---ANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSD

Query:  VVQQKYPGLSLSPSCCNMCIRNYETQIHLFSIC
        V+Q++ P   L PS C +   + E   H+F  C
Subjt:  VVQQKYPGLSLSPSCCNMCIRNYETQIHLFSIC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGGAGATTTACAAAGAAAAGGATGCTTTGTGGAGGAGGCTTATTTCTATAAAATATGGAGTCTCAAAAAATAATCTCAAACCCGGCAATCGCTCTCTAGGCAC
ATCCAAGGGTCCTTGGAAATCCATTCAAAAGATGCAAGGTCTGATCTACAACATTGGGCTAAAAGTTGGTAAGGGAGATAAGACCATGTTTTGGGAAGATGTTTGGATTG
GCTCATCAAATCTAAAGTCTCTGTTTCCCTCTTTATACAACCTTTCTCTAAAAAAAGAGGCTCAGATTCAGGAATTTGGGAACCCATTGACTGGAGATTGGAATCTTCAC
TTAAGTAGAAGCCTAAATGATGAAGAAATTCTGGAATGGGCTTTGCTGTCTCACCAACTTGCATCTTTCTCCTTTAAAAATGAGGAAGATTATTGGGTGTGGAATCTTGA
AGAATCTGGAAATTTTTCTACTGGATCTCTCACAAAAAAGCTGGCTTCTCGAGCAAACTTTGCTAATTCTGACCTCTACAGTATTTTATGGAAAGGCCCTATGCCAAAAA
AGGTCAAATTTTTCATTTGGGAGCTCAGCCATGCTTGTATTAATACATCAGATGTGGTCCAGCAAAAATATCCAGGGTTGTCTCTCTCTCCAAGTTGCTGTAATATGTGC
ATCAGAAATTATGAAACCCAGATTCATCTCTTCAGTATTTGTCCTTATGCTGCTGCTTTTGGGATTTCCTTCAGCAAGCTTTTGGTTGGCACATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTTGGAGATTTACAAAGAAAAGGATGCTTTGTGGAGGAGGCTTATTTCTATAAAATATGGAGTCTCAAAAAATAATCTCAAACCCGGCAATCGCTCTCTAGGCAC
ATCCAAGGGTCCTTGGAAATCCATTCAAAAGATGCAAGGTCTGATCTACAACATTGGGCTAAAAGTTGGTAAGGGAGATAAGACCATGTTTTGGGAAGATGTTTGGATTG
GCTCATCAAATCTAAAGTCTCTGTTTCCCTCTTTATACAACCTTTCTCTAAAAAAAGAGGCTCAGATTCAGGAATTTGGGAACCCATTGACTGGAGATTGGAATCTTCAC
TTAAGTAGAAGCCTAAATGATGAAGAAATTCTGGAATGGGCTTTGCTGTCTCACCAACTTGCATCTTTCTCCTTTAAAAATGAGGAAGATTATTGGGTGTGGAATCTTGA
AGAATCTGGAAATTTTTCTACTGGATCTCTCACAAAAAAGCTGGCTTCTCGAGCAAACTTTGCTAATTCTGACCTCTACAGTATTTTATGGAAAGGCCCTATGCCAAAAA
AGGTCAAATTTTTCATTTGGGAGCTCAGCCATGCTTGTATTAATACATCAGATGTGGTCCAGCAAAAATATCCAGGGTTGTCTCTCTCTCCAAGTTGCTGTAATATGTGC
ATCAGAAATTATGAAACCCAGATTCATCTCTTCAGTATTTGTCCTTATGCTGCTGCTTTTGGGATTTCCTTCAGCAAGCTTTTGGTTGGCACATAG
Protein sequenceShow/hide protein sequence
MDLEIYKEKDALWRRLISIKYGVSKNNLKPGNRSLGTSKGPWKSIQKMQGLIYNIGLKVGKGDKTMFWEDVWIGSSNLKSLFPSLYNLSLKKEAQIQEFGNPLTGDWNLH
LSRSLNDEEILEWALLSHQLASFSFKNEEDYWVWNLEESGNFSTGSLTKKLASRANFANSDLYSILWKGPMPKKVKFFIWELSHACINTSDVVQQKYPGLSLSPSCCNMC
IRNYETQIHLFSICPYAAAFGISFSKLLVGT