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Lag0017130 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017130
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr5:401188..401559
RNA-Seq ExpressionLag0017130
SyntenyLag0017130
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046763.1 hypothetical protein E6C27_scaffold216G00460 [Cucumis melo var. makuwa]6.0e-0537.97Show/hide
Query:  KIFKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMN-FKVQIVTFQDGNKLVDRTAGIHGSF
        K F+ I    GG I+  E        + A ++IR NY GF+PA V I + D N F +Q+VT  +G  L +R   +HG+F
Subjt:  KIFKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMN-FKVQIVTFQDGNKLVDRTAGIHGSF

TYK01560.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.7e-0538.1Show/hide
Query:  KIFKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMNFKVQIVTFQD
        +IFK + D L GFI Y + NS L+ CV   ++++ NY GF+P E ++++   +F VQ+ + Q+
Subjt:  KIFKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMNFKVQIVTFQD

TYK03139.1 hypothetical protein E5676_scaffold11G00140 [Cucumis melo var. makuwa]3.5e-0532.67Show/hide
Query:  KIFKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMN-FKVQIVTFQDGNKLVDRTAGIHGSFL-----------PTTTHFFHR
        K F+ I    GG I+  E        + A +++R NY GF+PA V I + + N F VQ+VT  +G  L++R   +HG+F            P +  FF +
Subjt:  KIFKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMN-FKVQIVTFQDGNKLVDRTAGIHGSFL-----------PTTTHFFHR

Query:  G
        G
Subjt:  G

XP_022149859.1 uncharacterized protein LOC111018186 [Momordica charantia]1.9e-1938.74Show/hide
Query:  FKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMNFKVQIVTFQDGNKLVDRTAGIHGSFLPTTTHFFHRGPTNPNFSPVDKWR
        FKAI + LGGFI+Y + NS  + C    ++++ NY GFIPAE++ ++G + F+ ++V+F+D   L  +  GIHG F       FH+G    + + +D+WR
Subjt:  FKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMNFKVQIVTFQDGNKLVDRTAGIHGSFLPTTTHFFHRGPTNPNFSPVDKWR

Query:  IENGLECPMIN
        +ENG   P +N
Subjt:  IENGLECPMIN

XP_031741396.1 general transcription factor IIF subunit 2 isoform X2 [Cucumis sativus]4.1e-0644.64Show/hide
Query:  EGDMNFKVQIVTFQDGNKLVDRTAGIHGSFLPTTTHFFHRGPTNPNFSPVDKWRIE
        + D +   ++V+FQD N L+D+ AGIHGSF P     F +GP  P+ +P+D WR+E
Subjt:  EGDMNFKVQIVTFQDGNKLVDRTAGIHGSFLPTTTHFFHRGPTNPNFSPVDKWRIE

TrEMBL top hitse value%identityAlignment
A0A5A7TDG1 LINE-1 retrotransposable element ORF2 protein4.9e-0533.64Show/hide
Query:  FKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMN-FKVQIVTFQDGNKLVDRTAGIHGSFLPTTTHFFHRGPTNPNFSPVDKW
        F+ I    GG I+  E        + A L+IR NY GF+PA V I + + N F VQ+VT  +G  L++R   +HG+F       F       +F+P  + 
Subjt:  FKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMN-FKVQIVTFQDGNKLVDRTAGIHGSFLPTTTHFFHRGPTNPNFSPVDKW

Query:  RIENGLE
         + +GLE
Subjt:  RIENGLE

A0A5A7TT76 Uncharacterized protein2.9e-0537.97Show/hide
Query:  KIFKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMN-FKVQIVTFQDGNKLVDRTAGIHGSF
        K F+ I    GG I+  E        + A ++IR NY GF+PA V I + D N F +Q+VT  +G  L +R   +HG+F
Subjt:  KIFKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMN-FKVQIVTFQDGNKLVDRTAGIHGSF

A0A5D3BR42 LINE-1 retrotransposable element ORF2 protein1.3e-0538.1Show/hide
Query:  KIFKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMNFKVQIVTFQD
        +IFK + D L GFI Y + NS L+ CV   ++++ NY GF+P E ++++   +F VQ+ + Q+
Subjt:  KIFKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMNFKVQIVTFQD

A0A5D3BYI6 Uncharacterized protein1.7e-0532.67Show/hide
Query:  KIFKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMN-FKVQIVTFQDGNKLVDRTAGIHGSFL-----------PTTTHFFHR
        K F+ I    GG I+  E        + A +++R NY GF+PA V I + + N F VQ+VT  +G  L++R   +HG+F            P +  FF +
Subjt:  KIFKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMN-FKVQIVTFQDGNKLVDRTAGIHGSFL-----------PTTTHFFHR

Query:  G
        G
Subjt:  G

A0A6J1D6X4 uncharacterized protein LOC1110181869.3e-2038.74Show/hide
Query:  FKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMNFKVQIVTFQDGNKLVDRTAGIHGSFLPTTTHFFHRGPTNPNFSPVDKWR
        FKAI + LGGFI+Y + NS  + C    ++++ NY GFIPAE++ ++G + F+ ++V+F+D   L  +  GIHG F       FH+G    + + +D+WR
Subjt:  FKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMNFKVQIVTFQDGNKLVDRTAGIHGSFLPTTTHFFHRGPTNPNFSPVDKWR

Query:  IENGLECPMIN
        +ENG   P +N
Subjt:  IENGLECPMIN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATTCAAAATCTTTAAAGCCATAAGAGATTGTCTCGGGGGATTCATTGAATATTTTGAAGTCAACTCTTTGCTCGTCTACTGTGTGGGCGCGGGTCTAAGAATCCG
TGATAATTACTATGGCTTCATCCCCGCTGAAGTTAATATCGTAGAGGGAGACATGAACTTTAAGGTGCAGATTGTAACTTTCCAAGATGGTAACAAGCTTGTGGACAGAA
CCGCTGGAATACATGGAAGCTTCTTGCCGACGACAACCCATTTTTTTCATAGAGGACCAACAAATCCCAACTTTAGCCCAGTGGATAAATGGAGAATAGAAAATGGTCTT
GAGTGCCCAATGATTAATGCCCATAGTTACTCACAGGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATTCAAAATCTTTAAAGCCATAAGAGATTGTCTCGGGGGATTCATTGAATATTTTGAAGTCAACTCTTTGCTCGTCTACTGTGTGGGCGCGGGTCTAAGAATCCG
TGATAATTACTATGGCTTCATCCCCGCTGAAGTTAATATCGTAGAGGGAGACATGAACTTTAAGGTGCAGATTGTAACTTTCCAAGATGGTAACAAGCTTGTGGACAGAA
CCGCTGGAATACATGGAAGCTTCTTGCCGACGACAACCCATTTTTTTCATAGAGGACCAACAAATCCCAACTTTAGCCCAGTGGATAAATGGAGAATAGAAAATGGTCTT
GAGTGCCCAATGATTAATGCCCATAGTTACTCACAGGCATAG
Protein sequenceShow/hide protein sequence
MAFKIFKAIRDCLGGFIEYFEVNSLLVYCVGAGLRIRDNYYGFIPAEVNIVEGDMNFKVQIVTFQDGNKLVDRTAGIHGSFLPTTTHFFHRGPTNPNFSPVDKWRIENGL
ECPMINAHSYSQA