; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017196 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017196
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptioncold shock domain-containing protein 3
Genome locationchr5:911658..912449
RNA-Seq ExpressionLag0017196
SyntenyLag0017196
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR002059 - Cold-shock protein, DNA-binding
IPR011129 - Cold shock domain
IPR012340 - Nucleic acid-binding, OB-fold
IPR019844 - Cold-shock (CSD) domain
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146143.1 cold shock domain-containing protein 3 [Cucumis sativus]2.0e-12792.31Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGG GGRGG GGGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGGG

Query:  GYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS--GGGGGGSGGGACYNCGGFGHLARDCNR
        GYGFGGWRGGDRRNG+SGAGGGGCYQCGEQGHLARDCTR SNRGGGGGGGGGCFTCGEVGHLARDCPRGNS  GGGGGG GGGACYNCGGFGHLARDCNR
Subjt:  GYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS--GGGGGGSGGGACYNCGGFGHLARDCNR

Query:  GGAGGGS----GGGGCFNCGEYGHLARDCQNESRNS-GGGGGRF----GGSGGASTCFNCGKSGHFARECPDA
        GGAGGGS    GGGGCFNCGEYGH+ARDCQNESR S GGGGGRF    GG GG++TCFNCGKSGHFARECPDA
Subjt:  GGAGGGS----GGGGCFNCGEYGHLARDCQNESRNS-GGGGGRF----GGSGGASTCFNCGKSGHFARECPDA

XP_008448549.1 PREDICTED: cold shock domain-containing protein 3 [Cucumis melo]1.6e-12792.99Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF  GGGG GGRGG GGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGGRGGRGGGGGGG

Query:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGGGSGGGACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNG+SG GGGGCYQCGEQGHLARDCTR SNR GGGGGGGGGCFTCGEVGHLARDCPRGNS GGGGGGSGGGACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGGGSGGGACYNCGGFGHLARDC

Query:  NRGGAGGGS---GGGGCFNCGEYGHLARDCQNESRNSGGGGGRF--GGSGGASTCFNCGKSGHFARECPDA
        NRGGAGGGS   GGGGCFNCGEYGH+ARDCQNESR SGGGGGRF  GG GG++TCFNCGKSGHFARECPDA
Subjt:  NRGGAGGGS---GGGGCFNCGEYGHLARDCQNESRNSGGGGGRF--GGSGGASTCFNCGKSGHFARECPDA

XP_022965328.1 cold shock domain-containing protein 3-like [Cucurbita maxima]3.5e-12795.06Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGG  GGR GG GGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGGG

Query:  GYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGSGGGACYNCGGFGHLARDCNRGG
        GYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS   GGG+GGGACYNCGGFGHLARDCNRGG
Subjt:  GYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGSGGGACYNCGGFGHLARDCNRGG

Query:  AGGGSGGGG--CFNCGEYGHLARDCQNESRNSGGGGGRFGGSGGASTCFNCGKSGHFARECPD
        AGGGSGGGG  CFNCGEYGHLARDCQNESR SGGGGGRFGG GGA+TCFNCGKSGHFARECPD
Subjt:  AGGGSGGGG--CFNCGEYGHLARDCQNESRNSGGGGGRFGGSGGASTCFNCGKSGHFARECPD

XP_023551806.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]3.5e-12795.44Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGG  GGR GG GGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGGG

Query:  GYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGSGGGACYNCGGFGHLARDCNRGG
        GYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGG GGGGGGCFTCGEVGHLARDCPRGNSGGGGGG+GGGACYNCGGFGHLARDCNRGG
Subjt:  GYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGSGGGACYNCGGFGHLARDCNRGG

Query:  AGGGS--GGGGCFNCGEYGHLARDCQNESRNSGGGGGRFGGSGGASTCFNCGKSGHFARECPD
        AGGGS  GGGGCFNCGEYGHLARDCQNESR S GGGGRFGG GGA+TCFNCGKSGHFARECPD
Subjt:  AGGGS--GGGGCFNCGEYGHLARDCQNESRNSGGGGGRFGGSGGASTCFNCGKSGHFARECPD

XP_038876618.1 cold shock domain-containing protein 3 [Benincasa hispida]2.4e-12892.62Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGG  GGRGG GGGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGGG

Query:  GYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGSGG--GACYNCGGFGHLARDCNR
        GYGFGGWRGGDRRNG+SGAGGG CYQCGEQGHLARDCTRASNR GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG GG  GACYNCGGFGHLARDCNR
Subjt:  GYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGSGG--GACYNCGGFGHLARDCNR

Query:  GGAGGGS-GGGGCFNCGEYGHLARDCQNESRNSGGGGGRF-----GGSGGASTCFNCGKSGHFARECPDAP
        GGAGGGS GGGGCFNCGEYGH+ARDCQNESR SGGGGGRF     GG GG +TCFNCGKSGHFARECPDAP
Subjt:  GGAGGGS-GGGGCFNCGEYGHLARDCQNESRNSGGGGGRF-----GGSGGASTCFNCGKSGHFARECPDAP

TrEMBL top hitse value%identityAlignment
A0A0A0L4X7 Uncharacterized protein9.8e-12892.31Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGG GGRGG GGGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGGG

Query:  GYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS--GGGGGGSGGGACYNCGGFGHLARDCNR
        GYGFGGWRGGDRRNG+SGAGGGGCYQCGEQGHLARDCTR SNRGGGGGGGGGCFTCGEVGHLARDCPRGNS  GGGGGG GGGACYNCGGFGHLARDCNR
Subjt:  GYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS--GGGGGGSGGGACYNCGGFGHLARDCNR

Query:  GGAGGGS----GGGGCFNCGEYGHLARDCQNESRNS-GGGGGRF----GGSGGASTCFNCGKSGHFARECPDA
        GGAGGGS    GGGGCFNCGEYGH+ARDCQNESR S GGGGGRF    GG GG++TCFNCGKSGHFARECPDA
Subjt:  GGAGGGS----GGGGCFNCGEYGHLARDCQNESRNS-GGGGGRF----GGSGGASTCFNCGKSGHFARECPDA

A0A1S3BKK1 cold shock domain-containing protein 37.5e-12892.99Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF  GGGG GGRGG GGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGGRGGRGGGGGGG

Query:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGGGSGGGACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNG+SG GGGGCYQCGEQGHLARDCTR SNR GGGGGGGGGCFTCGEVGHLARDCPRGNS GGGGGGSGGGACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGGGSGGGACYNCGGFGHLARDC

Query:  NRGGAGGGS---GGGGCFNCGEYGHLARDCQNESRNSGGGGGRF--GGSGGASTCFNCGKSGHFARECPDA
        NRGGAGGGS   GGGGCFNCGEYGH+ARDCQNESR SGGGGGRF  GG GG++TCFNCGKSGHFARECPDA
Subjt:  NRGGAGGGS---GGGGCFNCGEYGHLARDCQNESRNSGGGGGRF--GGSGGASTCFNCGKSGHFARECPDA

A0A5D3CJR2 Cold shock domain-containing protein 37.5e-12892.99Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF  GGGG GGRGG GGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGGRGGRGGGGGGG

Query:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGGGSGGGACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNG+SG GGGGCYQCGEQGHLARDCTR SNR GGGGGGGGGCFTCGEVGHLARDCPRGNS GGGGGGSGGGACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGGGSGGGACYNCGGFGHLARDC

Query:  NRGGAGGGS---GGGGCFNCGEYGHLARDCQNESRNSGGGGGRF--GGSGGASTCFNCGKSGHFARECPDA
        NRGGAGGGS   GGGGCFNCGEYGH+ARDCQNESR SGGGGGRF  GG GG++TCFNCGKSGHFARECPDA
Subjt:  NRGGAGGGS---GGGGCFNCGEYGHLARDCQNESRNSGGGGGRF--GGSGGASTCFNCGKSGHFARECPDA

A0A6J1HNK3 cold shock domain-containing protein 3-like1.7e-12795.06Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGG  GGR GG GGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGGG

Query:  GYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGSGGGACYNCGGFGHLARDCNRGG
        GYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS   GGG+GGGACYNCGGFGHLARDCNRGG
Subjt:  GYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGSGGGACYNCGGFGHLARDCNRGG

Query:  AGGGSGGGG--CFNCGEYGHLARDCQNESRNSGGGGGRFGGSGGASTCFNCGKSGHFARECPD
        AGGGSGGGG  CFNCGEYGHLARDCQNESR SGGGGGRFGG GGA+TCFNCGKSGHFARECPD
Subjt:  AGGGSGGGG--CFNCGEYGHLARDCQNESRNSGGGGGRFGGSGGASTCFNCGKSGHFARECPD

E5RDD6 Cold-shock DNA-binding family protein7.5e-12892.99Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF  GGGG GGRGG GGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGGRGGRGGGGGGG

Query:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGGGSGGGACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNG+SG GGGGCYQCGEQGHLARDCTR SNR GGGGGGGGGCFTCGEVGHLARDCPRGNS GGGGGGSGGGACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGGGSGGGACYNCGGFGHLARDC

Query:  NRGGAGGGS---GGGGCFNCGEYGHLARDCQNESRNSGGGGGRF--GGSGGASTCFNCGKSGHFARECPDA
        NRGGAGGGS   GGGGCFNCGEYGH+ARDCQNESR SGGGGGRF  GG GG++TCFNCGKSGHFARECPDA
Subjt:  NRGGAGGGS---GGGGCFNCGEYGHLARDCQNESRNSGGGGGRF--GGSGGASTCFNCGKSGHFARECPDA

SwissProt top hitse value%identityAlignment
O65639 Cold shock protein 17.0e-4649.66Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGG----GGG
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V A  G S  + +N  G G   RGGGG G    G  
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGG----GGG

Query:  GY-----GFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASN---RGGGGGGGGGCFTCGEVGHLARDCPRGNSGGG---GGGSGGG-ACYNCGG
        G+     G GG  GG  R      GG GCY CG+ GH ARDCT A N   RG   GG  GC+TCG+VGH+ARDC + + G G   G   GG   CY CG 
Subjt:  GY-----GFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASN---RGGGGGGGGGCFTCGEVGHLARDCPRGNSGGG---GGGSGGG-ACYNCGG

Query:  FGHLARDCNRGGAGGG--SGGGG---CFNCGEYGHLARDCQNESRNSG-----GGGGRF---------GGSGGASTCFNCGKSGHFAREC
         GH ARDC +  A G   SGGGG   C++CG  GH+ARDC  + + S      GG G           GG G  + C+ CGK GHFAREC
Subjt:  FGHLARDCNRGGAGGG--SGGGG---CFNCGEYGHLARDCQNESRNSG-----GGGGRF---------GGSGGASTCFNCGKSGHFAREC

P27484 Glycine-rich protein 23.1e-3851.26Show/hide
Query:  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSS--GNRRDNFGGGGRGGRGGGG
        MAEE   R  G V+WF+D KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++  G DG++KA++V   DG++  G R    GGGG GGRGGGG
Subjt:  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSS--GNRRDNFGGGGRGGRGGGG

Query:  -GGGGGGYGFGGWRGGDR--RNGSSGAGGGGCYQCGEQ--GHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGSGGGACYNCGGFG
         GGG GGYG GG RGG R    G  G GGGG Y  G +  G            GGG GGG GCF CGE GH ARDC +   GGGGG  GGG         
Subjt:  -GGGGGGYGFGGWRGGDR--RNGSSGAGGGGCYQCGEQ--GHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGSGGGACYNCGGFG

Query:  HLARDCNRGGAGGGSGGGGCFNCGEYGHLARDCQNESR
                   GGG GGGGC+ CGE GH AR+C +  R
Subjt:  HLARDCNRGGAGGGSGGGGCFNCGEYGHLARDCQNESR

Q38896 Cold shock domain-containing protein 41.7e-3150.49Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGRGGRG--GGGGGGG
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+   GN   + GGG  GGRG  GGGGG G
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGRGGRG--GGGGGGG

Query:  GGYGFGGWRGGDRRNGSSGAGGGG----CYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGSGGGACYNCGGFGHLARD
        GG G G + GG    GS G GGGG    C++CGE GH+AR+C++    G  GGGGGG +              G+ GGGGGG GG +CY+CG  GH ARD
Subjt:  GGYGFGGWRGGDRRNGSSGAGGGG----CYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGSGGGACYNCGGFGHLARD

Query:  CNRGGA
        C  GGA
Subjt:  CNRGGA

Q41188 Cold shock protein 22.7e-3449.34Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGGGGYG
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+    + N GGG  GGRGG GGG GGG G
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS--GGGGGGSGGGACYNCGGFGHLARDCNRGGA
         GG  GG         GGGG                   RGGGG GG  C+ CGE GH+ARDC  G    GGGGGG GGG  Y  GG G+       GG 
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS--GGGGGGSGGGACYNCGGFGHLARDCNRGGA

Query:  GGGSGGGGCFNCGEYGHLARDCQNESR
        GGG GGG C++CGE GH ARDC +  R
Subjt:  GGGSGGGGCFNCGEYGHLARDCQNESR

Q94C69 Cold shock domain-containing protein 31.2e-5350.68Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGGRGGRGGGGG------
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV A  G S N+++N   G GG     G  G      
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGGRGGRGGGGG------

Query:  -GGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGGGGCFTCGEVGHLARDCPRGN-----SGGGGGGSGGGACYNCGG
         GG GG  FGG  GG RR+G    G G CY CG+ GH ARDC ++   N GGGGGGG  C++CGEVGHLA+DC  G+      GGGG GSGG  CY CGG
Subjt:  -GGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGGGGCFTCGEVGHLARDCPRGN-----SGGGGGGSGGGACYNCGG

Query:  FGHLARDCNRGGAGG-GSGGGGCFNCGEYGHLARDCQNESRNSGGGGGR----------------------FGGSGGASTCFNCGKSGHFAREC
         GH ARDC + G G  G GG  C+ CG  GH+A+ C ++  + GGGGGR                       GG GG++ CF CGK GHFAREC
Subjt:  FGHLARDCNRGGAGG-GSGGGGCFNCGEYGHLARDCQNESRNSGGGGGR----------------------FGGSGGASTCFNCGKSGHFAREC

Arabidopsis top hitse value%identityAlignment
AT2G17870.1 cold shock domain protein 38.4e-5550.68Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGGRGGRGGGGG------
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV A  G S N+++N   G GG     G  G      
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGGRGGRGGGGG------

Query:  -GGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGGGGCFTCGEVGHLARDCPRGN-----SGGGGGGSGGGACYNCGG
         GG GG  FGG  GG RR+G    G G CY CG+ GH ARDC ++   N GGGGGGG  C++CGEVGHLA+DC  G+      GGGG GSGG  CY CGG
Subjt:  -GGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGGGGCFTCGEVGHLARDCPRGN-----SGGGGGGSGGGACYNCGG

Query:  FGHLARDCNRGGAGG-GSGGGGCFNCGEYGHLARDCQNESRNSGGGGGR----------------------FGGSGGASTCFNCGKSGHFAREC
         GH ARDC + G G  G GG  C+ CG  GH+A+ C ++  + GGGGGR                       GG GG++ CF CGK GHFAREC
Subjt:  FGHLARDCNRGGAGG-GSGGGGCFNCGEYGHLARDCQNESRNSGGGGGR----------------------FGGSGGASTCFNCGKSGHFAREC

AT2G21060.1 glycine-rich protein 2B1.2e-3250.49Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGRGGRG--GGGGGGG
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+   GN   + GGG  GGRG  GGGGG G
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGRGGRG--GGGGGGG

Query:  GGYGFGGWRGGDRRNGSSGAGGGG----CYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGSGGGACYNCGGFGHLARD
        GG G G + GG    GS G GGGG    C++CGE GH+AR+C++    G  GGGGGG +              G+ GGGGGG GG +CY+CG  GH ARD
Subjt:  GGYGFGGWRGGDRRNGSSGAGGGG----CYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGSGGGACYNCGGFGHLARD

Query:  CNRGGA
        C  GGA
Subjt:  CNRGGA

AT4G36020.1 cold shock domain protein 14.9e-4749.66Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGG----GGG
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V A  G S  + +N  G G   RGGGG G    G  
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGG----GGG

Query:  GY-----GFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASN---RGGGGGGGGGCFTCGEVGHLARDCPRGNSGGG---GGGSGGG-ACYNCGG
        G+     G GG  GG  R      GG GCY CG+ GH ARDCT A N   RG   GG  GC+TCG+VGH+ARDC + + G G   G   GG   CY CG 
Subjt:  GY-----GFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASN---RGGGGGGGGGCFTCGEVGHLARDCPRGNSGGG---GGGSGGG-ACYNCGG

Query:  FGHLARDCNRGGAGGG--SGGGG---CFNCGEYGHLARDCQNESRNSG-----GGGGRF---------GGSGGASTCFNCGKSGHFAREC
         GH ARDC +  A G   SGGGG   C++CG  GH+ARDC  + + S      GG G           GG G  + C+ CGK GHFAREC
Subjt:  FGHLARDCNRGGAGGG--SGGGG---CFNCGEYGHLARDCQNESRNSG-----GGGGRF---------GGSGGASTCFNCGKSGHFAREC

AT4G38680.1 glycine rich protein 21.9e-3549.34Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGGGGYG
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+    + N GGG  GGRGG GGG GGG G
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS--GGGGGGSGGGACYNCGGFGHLARDCNRGGA
         GG  GG         GGGG                   RGGGG GG  C+ CGE GH+ARDC  G    GGGGGG GGG  Y  GG G+       GG 
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS--GGGGGGSGGGACYNCGGFGHLARDCNRGGA

Query:  GGGSGGGGCFNCGEYGHLARDCQNESR
        GGG GGG C++CGE GH ARDC +  R
Subjt:  GGGSGGGGCFNCGEYGHLARDCQNESR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAGTGGTTCAACGATTCCAAAGGGTTCGGCTTCATCAAGCCAGATGTTGAAGGCCCGGATCTGTTCGTTCATCAATCCTC
CATTAAATCCGATGGCTACCGGAGCCTCGTCGTCGGAGATCACGTCGAGTTCCAGATCGCCCCTGGCGATGATGGGAAATCCAAGGCCATTGAGGTCGTTGCGCTCGATG
GATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGAAGGGGTGGCCGCGGCGGCGGCGGCGGCGGCGGTGGTGGTGGTTATGGATTTGGTGGTTGGAGGGGTGGC
GATAGGCGGAATGGGAGCAGTGGAGCCGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGACTGTACTCGTGCTAGTAACCGCGGCGGCGGAGG
TGGTGGCGGCGGTGGGTGCTTTACTTGCGGGGAAGTTGGTCACTTAGCGAGGGATTGCCCACGAGGAAACAGCGGCGGAGGCGGCGGTGGTTCCGGTGGTGGGGCTTGCT
ATAATTGTGGTGGGTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGGGCTGGAGGTGGAAGTGGTGGTGGTGGTTGCTTTAATTGTGGGGAATATGGGCATTTAGCC
AGAGATTGCCAGAATGAAAGCCGAAACAGTGGCGGCGGCGGAGGAAGGTTTGGTGGCAGCGGTGGCGCAAGCACTTGCTTCAATTGTGGGAAGTCGGGGCATTTTGCTAG
GGAGTGTCCTGACGCACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAGTGGTTCAACGATTCCAAAGGGTTCGGCTTCATCAAGCCAGATGTTGAAGGCCCGGATCTGTTCGTTCATCAATCCTC
CATTAAATCCGATGGCTACCGGAGCCTCGTCGTCGGAGATCACGTCGAGTTCCAGATCGCCCCTGGCGATGATGGGAAATCCAAGGCCATTGAGGTCGTTGCGCTCGATG
GATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGAAGGGGTGGCCGCGGCGGCGGCGGCGGCGGCGGTGGTGGTGGTTATGGATTTGGTGGTTGGAGGGGTGGC
GATAGGCGGAATGGGAGCAGTGGAGCCGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGACTGTACTCGTGCTAGTAACCGCGGCGGCGGAGG
TGGTGGCGGCGGTGGGTGCTTTACTTGCGGGGAAGTTGGTCACTTAGCGAGGGATTGCCCACGAGGAAACAGCGGCGGAGGCGGCGGTGGTTCCGGTGGTGGGGCTTGCT
ATAATTGTGGTGGGTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGGGCTGGAGGTGGAAGTGGTGGTGGTGGTTGCTTTAATTGTGGGGAATATGGGCATTTAGCC
AGAGATTGCCAGAATGAAAGCCGAAACAGTGGCGGCGGCGGAGGAAGGTTTGGTGGCAGCGGTGGCGCAAGCACTTGCTTCAATTGTGGGAAGTCGGGGCATTTTGCTAG
GGAGTGTCCTGACGCACCTTGA
Protein sequenceShow/hide protein sequence
MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGRGGRGGGGGGGGGGYGFGGWRGG
DRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGSGGGACYNCGGFGHLARDCNRGGAGGGSGGGGCFNCGEYGHLA
RDCQNESRNSGGGGGRFGGSGGASTCFNCGKSGHFARECPDAP