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Lag0017222 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017222
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr5:1152365..1156083
RNA-Seq ExpressionLag0017222
SyntenyLag0017222
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY85402.1 hypothetical protein Acr_04g0001400 [Actinidia rufa]9.7e-0741.58Show/hide
Query:  TQNTFVPPTGFQYPPQSTNPL--SFFPNYTNPQPFFPSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFINGT-PAPVKYLDPAQTQLRE
        T +   PP     PP ++NPL  S  PN  NPQ    +SP  + P++  PL  KL+D NY++WK QLLN +IA  +E F++G+   P ++LDP Q Q   
Subjt:  TQNTFVPPTGFQYPPQSTNPL--SFFPNYTNPQPFFPSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFINGT-PAPVKYLDPAQTQLRE

Query:  E
        E
Subjt:  E

GFZ12741.1 UBX domain-containing protein [Actinidia rufa]3.7e-0638.24Show/hide
Query:  TQNTFVPPTGFQYPPQSTNPLSFFPNYTNPQP---FFPSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFINGT-PAPVKYLDPAQTQLR
        T ++  PP     PP ++NPL   P+ + P+P      +SP  + P++  PL  KL+D NY++WK QLLN +IA  +E F++G+   P ++LDP Q Q  
Subjt:  TQNTFVPPTGFQYPPQSTNPLSFFPNYTNPQP---FFPSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFINGT-PAPVKYLDPAQTQLR

Query:  EE
         E
Subjt:  EE

RVW56403.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.0e-0844.94Show/hide
Query:  LSFFPNYTNPQPFF-PSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFING-TPAPVKYLDPAQTQLREEDVACKTVNL
        L+  P   NP P F P+   +++P+L+ PL  KL++TN  LWKNQLLN IIA  +E FI G TP P K+LD AQ Q+    +  +  N+
Subjt:  LSFFPNYTNPQPFF-PSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFING-TPAPVKYLDPAQTQLREEDVACKTVNL

RVX22862.1 hypothetical protein CK203_008411 [Vitis vinifera]1.2e-0750Show/hide
Query:  LSFFPNYTNPQPFF-PSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFING-TPAPVKYLDPAQ
        L+  P   NP P F P+   +++P+L+ PL  KL++TN  LWKNQL+N IIA  +E FI G TP P K+LD AQ
Subjt:  LSFFPNYTNPQPFF-PSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFING-TPAPVKYLDPAQ

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]2.8e-0646.43Show/hide
Query:  QYPPQSTNPLSFFPNYTNPQPFFPSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFINGT-PAPVKYLDPAQTQ
        Q+PP + N L+  PN     PF     ++ FPTL  PLN KLND N+LLWKNQLLN +IA  +  +++GT   P ++LD  Q Q
Subjt:  QYPPQSTNPLSFFPNYTNPQPFFPSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFINGT-PAPVKYLDPAQTQ

TrEMBL top hitse value%identityAlignment
A0A438F8X3 Retrovirus-related Pol polyprotein from transposon RE15.0e-0944.94Show/hide
Query:  LSFFPNYTNPQPFF-PSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFING-TPAPVKYLDPAQTQLREEDVACKTVNL
        L+  P   NP P F P+   +++P+L+ PL  KL++TN  LWKNQLLN IIA  +E FI G TP P K+LD AQ Q+    +  +  N+
Subjt:  LSFFPNYTNPQPFF-PSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFING-TPAPVKYLDPAQTQLREEDVACKTVNL

A0A438KNU0 Uncharacterized protein5.6e-0850Show/hide
Query:  LSFFPNYTNPQPFF-PSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFING-TPAPVKYLDPAQ
        L+  P   NP P F P+   +++P+L+ PL  KL++TN  LWKNQL+N IIA  +E FI G TP P K+LD AQ
Subjt:  LSFFPNYTNPQPFF-PSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFING-TPAPVKYLDPAQ

A0A6J1DQX7 uncharacterized protein LOC1110223151.4e-0646.43Show/hide
Query:  QYPPQSTNPLSFFPNYTNPQPFFPSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFINGT-PAPVKYLDPAQTQ
        Q+PP + N L+  PN     PF     ++ FPTL  PLN KLND N+LLWKNQLLN +IA  +  +++GT   P ++LD  Q Q
Subjt:  QYPPQSTNPLSFFPNYTNPQPFFPSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFINGT-PAPVKYLDPAQTQ

A0A7J0EGI5 Uncharacterized protein4.7e-0741.58Show/hide
Query:  TQNTFVPPTGFQYPPQSTNPL--SFFPNYTNPQPFFPSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFINGT-PAPVKYLDPAQTQLRE
        T +   PP     PP ++NPL  S  PN  NPQ    +SP  + P++  PL  KL+D NY++WK QLLN +IA  +E F++G+   P ++LDP Q Q   
Subjt:  TQNTFVPPTGFQYPPQSTNPL--SFFPNYTNPQPFFPSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFINGT-PAPVKYLDPAQTQLRE

Query:  E
        E
Subjt:  E

A0A7J0GPN0 UBX domain-containing protein1.8e-0638.24Show/hide
Query:  TQNTFVPPTGFQYPPQSTNPLSFFPNYTNPQP---FFPSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFINGT-PAPVKYLDPAQTQLR
        T ++  PP     PP ++NPL   P+ + P+P      +SP  + P++  PL  KL+D NY++WK QLLN +IA  +E F++G+   P ++LDP Q Q  
Subjt:  TQNTFVPPTGFQYPPQSTNPLSFFPNYTNPQP---FFPSSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFINGT-PAPVKYLDPAQTQLR

Query:  EE
         E
Subjt:  EE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCTTCTTCAAGCTCTTCTTCAGTCGACAGCACCACTTTACCGCCGATAGTTTCAACAGTAAGTTCTTCTCCGATCACCACTCCGATTGCCTCCTCCACCGTATC
ATTATCTTCTGTAACCCCCCCTGCTTTACCTCAACGATTTCACCTTAATACTCCTACAAGACCTCTGAACCCAAATGTTGCCCCATTTCAAAACCTTCCTCAACATCCTG
GCTTCACCCAAAATACCTTTGTCCCACCCACAGGTTTTCAATATCCCCCTCAATCGACCAATCCTCTTTCCTTTTTTCCTAATTATACCAACCCCCAACCATTTTTTCCG
TCGTCCCCTTCCTCTTCGTTCCCTACCTTGACGCCTCCGTTGAATACCAAGCTGAATGATACAAATTACCTATTGTGGAAGAATCAGTTGCTCAACCATATCATAGCCTT
TGACATGGAGAGTTTTATCAATGGAACTCCAGCTCCAGTGAAGTACTTGGATCCCGCCCAAACACAGTTGAGGGAGGAAGACGTGGCCTGCAAGACAGTAAACCTGCACA
CCGGTGTGGTGCTCGCCACACCGGCTCCGATGCTTAAGTCAGCAAACAGAACGGTAGGGCGTGGAAAAGTCAAACCAGGCGAAACCGGGGCATCCAGAGGCGGTGGGGAC
CAGACGAGACCGAACGGGCTCGGCCCGCGCGAGAGGGCCGAGGGTCGGCCTCGGCCCATGGCCGAGGCCGAGCAGGGGGTCGGGCCTAAAACCCGACCCCTTCGGTCTTG
GCCCGTCTCACTTGCCGGTTTTGCCCCCTTGGTCCATCTTTCAGCCCGATTACTCCCCGATTGTCCTCGTCAGCTCCTTGTATATCGGGGTGGTCCAAAATTGCCTATAA
CACTTACGTTGACTTATAATTTTCGATTAACGTCATCAGAAAAGATATCGACCGTCACGGTTGCGAAAGTTCGACTTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCTTCTTCAAGCTCTTCTTCAGTCGACAGCACCACTTTACCGCCGATAGTTTCAACAGTAAGTTCTTCTCCGATCACCACTCCGATTGCCTCCTCCACCGTATC
ATTATCTTCTGTAACCCCCCCTGCTTTACCTCAACGATTTCACCTTAATACTCCTACAAGACCTCTGAACCCAAATGTTGCCCCATTTCAAAACCTTCCTCAACATCCTG
GCTTCACCCAAAATACCTTTGTCCCACCCACAGGTTTTCAATATCCCCCTCAATCGACCAATCCTCTTTCCTTTTTTCCTAATTATACCAACCCCCAACCATTTTTTCCG
TCGTCCCCTTCCTCTTCGTTCCCTACCTTGACGCCTCCGTTGAATACCAAGCTGAATGATACAAATTACCTATTGTGGAAGAATCAGTTGCTCAACCATATCATAGCCTT
TGACATGGAGAGTTTTATCAATGGAACTCCAGCTCCAGTGAAGTACTTGGATCCCGCCCAAACACAGTTGAGGGAGGAAGACGTGGCCTGCAAGACAGTAAACCTGCACA
CCGGTGTGGTGCTCGCCACACCGGCTCCGATGCTTAAGTCAGCAAACAGAACGGTAGGGCGTGGAAAAGTCAAACCAGGCGAAACCGGGGCATCCAGAGGCGGTGGGGAC
CAGACGAGACCGAACGGGCTCGGCCCGCGCGAGAGGGCCGAGGGTCGGCCTCGGCCCATGGCCGAGGCCGAGCAGGGGGTCGGGCCTAAAACCCGACCCCTTCGGTCTTG
GCCCGTCTCACTTGCCGGTTTTGCCCCCTTGGTCCATCTTTCAGCCCGATTACTCCCCGATTGTCCTCGTCAGCTCCTTGTATATCGGGGTGGTCCAAAATTGCCTATAA
CACTTACGTTGACTTATAATTTTCGATTAACGTCATCAGAAAAGATATCGACCGTCACGGTTGCGAAAGTTCGACTTAAATAA
Protein sequenceShow/hide protein sequence
MASSSSSSSVDSTTLPPIVSTVSSSPITTPIASSTVSLSSVTPPALPQRFHLNTPTRPLNPNVAPFQNLPQHPGFTQNTFVPPTGFQYPPQSTNPLSFFPNYTNPQPFFP
SSPSSSFPTLTPPLNTKLNDTNYLLWKNQLLNHIIAFDMESFINGTPAPVKYLDPAQTQLREEDVACKTVNLHTGVVLATPAPMLKSANRTVGRGKVKPGETGASRGGGD
QTRPNGLGPRERAEGRPRPMAEAEQGVGPKTRPLRSWPVSLAGFAPLVHLSARLLPDCPRQLLVYRGGPKLPITLTLTYNFRLTSSEKISTVTVAKVRLK