; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017232 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017232
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr5:1210926..1211528
RNA-Seq ExpressionLag0017232
SyntenyLag0017232
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019149681.1 PREDICTED: uncharacterized protein LOC109146487 [Ipomoea nil]1.7e-2541.14Show/hide
Query:  MCIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFFSKPK----GGVQGDAENFK
        MC+ +VS+S+L+NG  T+  TP  GLRQGDPLSPYLF++CAEGLS +L+  +  G+I G ++AR AP+ITHLFFADD  FF K      G V+     ++
Subjt:  MCIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFFSKPK----GGVQGDAENFK

Query:  ILRGSHWPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCPSSLSKKQE
         + G         +   C      ++ +  +AD+L V    + GKYLG PS + + ++
Subjt:  ILRGSHWPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCPSSLSKKQE

XP_019170410.1 PREDICTED: uncharacterized protein LOC109165884 [Ipomoea nil]1.7e-2541.4Show/hide
Query:  MCIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFFSKPK----GGVQGDAENFK
        MC+ +VS+S+LING  +E  TP  GLRQGDPLSPYLF++CAEGLS +L+  E+ G I G ++AR AP+ITHLFFADD   F K      G ++     ++
Subjt:  MCIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFFSKPK----GGVQGDAENFK

Query:  ILRGSHWPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCPSSLSKKQ
         + G         +   C     + + +  + DIL V    + GKYLG PS + + +
Subjt:  ILRGSHWPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCPSSLSKKQ

XP_019175839.1 PREDICTED: uncharacterized protein LOC109171159 [Ipomoea nil]2.9e-2543.33Show/hide
Query:  MCIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFFSKPK----GGVQGDAENFK
        MC+ +VS+S+LING  TE  TP  GLRQGDPLSPYLF++CAEGLS +L+  E+ G I G ++AR AP+ITHLFFA D   F K      G ++     ++
Subjt:  MCIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFFSKPK----GGVQGDAENFK

Query:  ILRGSHWPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCP
         + G         +   C     + + +  +ADIL V    + GKYLG P
Subjt:  ILRGSHWPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCP

XP_019183646.1 PREDICTED: uncharacterized protein LOC109178467 [Ipomoea nil]1.4e-2440Show/hide
Query:  MCIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFFSKPKGGVQGDAENFKILRG
        +C+ +VS++LLING  +   TP  GLRQGDPLSPYLF++CAEGLS +L+  + SG + G ++AR AP I+HLFFADD   F +       +  N  +L  
Subjt:  MCIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFFSKPKGGVQGDAENFKILRG

Query:  S-HWPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCPSSLSKKQE
        S         +   C       +++ ++A IL V   P  GKYLG PS + + ++
Subjt:  S-HWPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCPSSLSKKQE

XP_028062862.1 uncharacterized protein LOC114266180 [Camellia sinensis]1.5e-2636.73Show/hide
Query:  CIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFFS----KPKGGVQGDAENFKI
        CI SVS+S+L+NG  T+ F P+ GLRQGDPLSPYLF+LCAEGLS++++  E  GK+TG+ + R +P ++H+FFADD   F     +    V+     ++I
Subjt:  CIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFFS----KPKGGVQGDAENFKI

Query:  LRGSHWPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCPSSLSKKQEGYNELYKDQSSKCLTRLERQFVFISWEGGAPKSSGSSDP
          G       L +   C       D QV L + + V  + D GKYLG P  + + + G     KD+  K L   + +++  +      KS   S P
Subjt:  LRGSHWPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCPSSLSKKQEGYNELYKDQSSKCLTRLERQFVFISWEGGAPKSSGSSDP

TrEMBL top hitse value%identityAlignment
A0A1B5Z7R2 Reverse transcriptase domain-containing protein (Fragment)2.7e-2438.34Show/hide
Query:  MCIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFFSKPKGGVQGDAENFKILRG
        +C+ESV +S+L+NG  TE   P  GLRQGDPLSPYLF++CAEGL+ ++R+ E SG I G++I R AP I+HL FADD   F +       +A   K +  
Subjt:  MCIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFFSKPKGGVQGDAENFKILRG

Query:  SHWPNCQLRQIGNCVRSKHNNDEQVLLAD------ILKVKIVPDHGKYLGCPSSLSKKQEGYNELYKDQ--------SSKCLTRLERQFVFIS
        ++       Q  N  +S+      VL  D       L V+ V   GKYLG PS + + ++      KD+        SSKCL++  R+ +  S
Subjt:  SHWPNCQLRQIGNCVRSKHNNDEQVLLAD------ILKVKIVPDHGKYLGCPSSLSKKQEGYNELYKDQ--------SSKCLTRLERQFVFIS

A0A392M0W2 Replication protein A 70 kDa dna-binding subunit (Fragment)1.0e-2335.2Show/hide
Query:  MCIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFFSKPKGGVQGDAENFKILRG
        MC+ESV +S+++N +      P  GLRQGDPLSPYLF++CAEGLS ++R  E  G I G +I R AP I+HL FADD   F +     + +A   K +  
Subjt:  MCIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFFSKPKGGVQGDAENFKILRG

Query:  SH---------WPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCPSSLSKKQEGYNELYKDQ--------SSKCLTRLERQFVFIS
        ++          P  ++ +  N  +S  N+     +A++L  + V   GKYLG PS + + ++      KD+        SSKCL++  R+ +  S
Subjt:  SH---------WPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCPSSLSKKQEGYNELYKDQ--------SSKCLTRLERQFVFIS

A0A392M1V0 Reverse transcriptase domain-containing protein (Fragment)2.0e-2439.33Show/hide
Query:  CIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFFSKPK-GGVQGDAENFKILRG
        C+ SVSFS+LING+ T  FTPQ GLRQGDPLSPYLF+LCAE LS +L   +  G   GL+IA  AP I+HLFFADD   F +      Q   + FK+ + 
Subjt:  CIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFFSKPK-GGVQGDAENFKILRG

Query:  SHWPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCPSSLSK-KQEGYNELYKDQSSKCLTRLERQFVF
        +      + +   C        +++     + +KI     KYLG P+ + + KQ+ +N L     +K     ER   F
Subjt:  SHWPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCPSSLSK-KQEGYNELYKDQSSKCLTRLERQFVF

A0A803Q9W0 Uncharacterized protein1.1e-2539.43Show/hide
Query:  CIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFF--SKPKG--GVQGDAENFKI
        CI+S+SFS+L+NG  +    P  GLRQGDPLSPY+FLLC+EGLS +++  E + ++ GL+  R    ++HLFFADD   F  + P     ++   + + +
Subjt:  CIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFF--SKPKG--GVQGDAENFKI

Query:  LRGSHWPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCPSSLSKKQEGYNELYKDQSSKCLTRLE
        L G         +   CV  + N+ + +LLA IL VK+V  H KYLG P+S+ KK++   E+++D  +K  T+L+
Subjt:  LRGSHWPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCPSSLSKKQEGYNELYKDQSSKCLTRLE

A0A803QSM5 Uncharacterized protein3.5e-2435.42Show/hide
Query:  CIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFF----SKPKGGVQGDAENFKI
        CI +VSFS+L+NG+ + +  PQ GLRQGDPLSPY+FLLC+EG S +++  E + KI G++  R    ++HLFFADD   F       +  ++   + +  
Subjt:  CIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFF----SKPKGGVQGDAENFKI

Query:  LRGSHWPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCPSSLSKKQEGYNELYKDQSSKCLTRLERQFVFISWEGGAPKSSG
        L G       L++   CV  K N  +  +LA  L VK+V  H KYLG P+++ ++++   E+++   SK   +L+       W+G     +G
Subjt:  LRGSHWPNCQLRQIGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCPSSLSKKQEGYNELYKDQSSKCLTRLERQFVFISWEGGAPKSSG

SwissProt top hitse value%identityAlignment
P11369 LINE-1 retrotransposable element ORF2 protein1.0e-0436.59Show/hide
Query:  SLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADD-ICFFSKPKGGVQ
        ++ +NG+  E    + G RQG PLSPYLF +  E L+  +R  +   +I G+QI +    I+ L  ADD I + S PK   +
Subjt:  SLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADD-ICFFSKPKGGVQ

P92555 Uncharacterized mitochondrial protein AtMg012501.4e-1450.75Show/hide
Query:  LINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADD
        +ING    + TP  GLRQGDPLSPYLF+LC E LS + R  +  G++ G++++  +P I HL FADD
Subjt:  LINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADD

Arabidopsis top hitse value%identityAlignment
ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)1.0e-1550.75Show/hide
Query:  LINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADD
        +ING    + TP  GLRQGDPLSPYLF+LC E LS + R  +  G++ G++++  +P I HL FADD
Subjt:  LINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTATTGAATCTGTTTCTTTCTCACTTCTCATTAATGGGAAATGCACTGAAGTCTTTACACCCCAATGGGGCCTTAGACAAGGCGATCCTTTATCTCCTTATTTGTT
TCTTTTATGTGCTGAAGGCTTATCCAACATTCTTCGGAATGTTGAGATCTCAGGCAAAATAACAGGTCTTCAGATTGCTCGAACGGCTCCTGCTATTACTCACCTCTTTT
TTGCAGATGATATTTGCTTTTTCTCAAAGCCAAAAGGAGGAGTTCAGGGAGATGCAGAGAATTTTAAAATTCTACGAGGAAGCCACTGGCCAAATTGTCAACTTCGACAA
ATCGGCAATTGTGTTCGGAGCAAACACAACAATGATGAACAGGTTCTTCTAGCTGACATTCTGAAAGTCAAGATAGTTCCAGACCATGGGAAATATCTTGGTTGTCCATC
CTCTTTATCAAAAAAACAAGAAGGCTACAATGAATTATATAAAGACCAAAGTTCAAAATGTCTTACAAGGCTGGAAAGGCAATTTGTTTTCATCAGCTGGGAAGGAGGTG
CTCCTAAAAGCAGTGGCTCAAGCGATCCCCACTCATACTCTCTCTTGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTATTGAATCTGTTTCTTTCTCACTTCTCATTAATGGGAAATGCACTGAAGTCTTTACACCCCAATGGGGCCTTAGACAAGGCGATCCTTTATCTCCTTATTTGTT
TCTTTTATGTGCTGAAGGCTTATCCAACATTCTTCGGAATGTTGAGATCTCAGGCAAAATAACAGGTCTTCAGATTGCTCGAACGGCTCCTGCTATTACTCACCTCTTTT
TTGCAGATGATATTTGCTTTTTCTCAAAGCCAAAAGGAGGAGTTCAGGGAGATGCAGAGAATTTTAAAATTCTACGAGGAAGCCACTGGCCAAATTGTCAACTTCGACAA
ATCGGCAATTGTGTTCGGAGCAAACACAACAATGATGAACAGGTTCTTCTAGCTGACATTCTGAAAGTCAAGATAGTTCCAGACCATGGGAAATATCTTGGTTGTCCATC
CTCTTTATCAAAAAAACAAGAAGGCTACAATGAATTATATAAAGACCAAAGTTCAAAATGTCTTACAAGGCTGGAAAGGCAATTTGTTTTCATCAGCTGGGAAGGAGGTG
CTCCTAAAAGCAGTGGCTCAAGCGATCCCCACTCATACTCTCTCTTGCTTTAA
Protein sequenceShow/hide protein sequence
MCIESVSFSLLINGKCTEVFTPQWGLRQGDPLSPYLFLLCAEGLSNILRNVEISGKITGLQIARTAPAITHLFFADDICFFSKPKGGVQGDAENFKILRGSHWPNCQLRQ
IGNCVRSKHNNDEQVLLADILKVKIVPDHGKYLGCPSSLSKKQEGYNELYKDQSSKCLTRLERQFVFISWEGGAPKSSGSSDPHSYSLLL