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Lag0017239 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017239
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionprotein PAM68, chloroplastic
Genome locationchr5:1299192..1300489
RNA-Seq ExpressionLag0017239
SyntenyLag0017239
Gene Ontology termsGO:0010207 - photosystem II assembly (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR021855 - PAM68-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596699.1 Protein PAM68, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.3e-8883.57Show/hide
Query:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPR-KRTKKPKTEGDGEEES-----EED
        MAAI GSLNLPLAPS LPS+HI RN   SI SKS +RN F LL PS+YQ QTR NH+ I+NATLRSPKGFGPAPR K+ KK K  GDGEEES     EE+
Subjt:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPR-KRTKKPKTEGDGEEES-----EED

Query:  EEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPV
        EE+EE+  VIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPV
Subjt:  EEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPV

Query:  FWQSIWSGGSNKK
        FWQSIWSGGSNKK
Subjt:  FWQSIWSGGSNKK

XP_022145390.1 protein PAM68, chloroplastic [Momordica charantia]1.0e-8682.21Show/hide
Query:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPRKRTKKPK--TEGDGEEESEEDEEDE
        MAAIAGSLNLPLAPSNLPS+ IKRNCKFSIHSKSHER RFPLL PSIYQ QTR+N   IL ATLRSPKGFGPAP+KR KK +   E D +E+ +EDE++E
Subjt:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPRKRTKKPK--TEGDGEEESEEDEEDE

Query:  EEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQS
         E  VIPEVVTNRM+SRMGFSVGIPLLIGLLFFPFFYYLKV LKIDVP+WVP IVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQS
Subjt:  EEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQS

Query:  IWSGGSNK
        IW+    K
Subjt:  IWSGGSNK

XP_022949106.1 protein PAM68, chloroplastic [Cucurbita moschata]2.5e-8883.96Show/hide
Query:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPR-KRTKKPKTEGDGEEESE----EDE
        MAAI GSLNLPLAPS LPS+HI RN   SI SKS +RN F LL PS+YQ QTR NH+ I+NATLRSPKGFGPAPR K+ KK K  GDGEEESE    E+E
Subjt:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPR-KRTKKPKTEGDGEEESE----EDE

Query:  EDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVF
        E+EE+  VIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVF
Subjt:  EDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVF

Query:  WQSIWSGGSNKK
        WQSIWSGGSNKK
Subjt:  WQSIWSGGSNKK

XP_023005760.1 protein PAM68, chloroplastic [Cucurbita maxima]5.0e-8984.51Show/hide
Query:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPR-KRTKKPKTE--GDGEEES---EED
        MAAI GSLNLPLAPS LPS+HI R  K SI SKSH+RN F LL PS+YQ QTR NH+ I+NATLRSPKGFGPAPR K+ KK KTE  GDGEEES   E++
Subjt:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPR-KRTKKPKTE--GDGEEES---EED

Query:  EEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPV
        EE+EE+  VIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPV
Subjt:  EEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPV

Query:  FWQSIWSGGSNKK
        FWQSIWSGGSNKK
Subjt:  FWQSIWSGGSNKK

XP_023540526.1 protein PAM68, chloroplastic [Cucurbita pepo subsp. pepo]2.7e-9084.51Show/hide
Query:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPRKRTKKPKTE--GDGEEESE----ED
        MAAIAGSLNLPLAPS LPS+HI RN   SI SKSH+RN F LL PS+YQ QTR NH+ I+NATLRSPKGFGP PRK+ KK KT+  GDGEEESE    E+
Subjt:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPRKRTKKPKTE--GDGEEESE----ED

Query:  EEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPV
        EE+EE+  VIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPV
Subjt:  EEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPV

Query:  FWQSIWSGGSNKK
        FWQSIWSGGSNKK
Subjt:  FWQSIWSGGSNKK

TrEMBL top hitse value%identityAlignment
A0A0A0L507 Uncharacterized protein1.7e-8279.91Show/hide
Query:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSI--YQTQTRMNHSTILNATLRSPKGFGPAPR-KRTKKPKTEG----DGEEESEE
        MAAIAGSLNLPLAPSNLP + IK+NCKFS+H KS+ERN FP L P+I   Q QT  N  T LNATLR PKGFGPA R K+TKK + EG    D EEE EE
Subjt:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSI--YQTQTRMNHSTILNATLRSPKGFGPAPR-KRTKKPKTEG----DGEEESEE

Query:  DEEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWP
        DEE+EEE  VIPEVVTNRM+SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDP+REGSLLGWNEAQKNWP
Subjt:  DEEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWP

Query:  VFWQSIWSGGSNKK
        VFW+SIW GGSNKK
Subjt:  VFWQSIWSGGSNKK

A0A1S3BKY8 protein PAM68, chloroplastic isoform X21.5e-8379.36Show/hide
Query:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPRKRTKKPKTEGDG---------EEES
        MAAIAGSLNLPLAPSNLP + IK+NC+FSIH KS+ERN FP   P+I Q QTR NH T LNATLR PKGFGPAPRK+ K  KT+G+G         EEE 
Subjt:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPRKRTKKPKTEGDG---------EEES

Query:  EEDEED--EEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQ
         E+EED  EEE  VIPEVVTNRM+SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQ
Subjt:  EEDEED--EEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQ

Query:  KNWPVFWQSIWSGGSNKK
        KNWPVFWQSIW GGSNKK
Subjt:  KNWPVFWQSIWSGGSNKK

A0A6J1CUC6 protein PAM68, chloroplastic5.1e-8782.21Show/hide
Query:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPRKRTKKPK--TEGDGEEESEEDEEDE
        MAAIAGSLNLPLAPSNLPS+ IKRNCKFSIHSKSHER RFPLL PSIYQ QTR+N   IL ATLRSPKGFGPAP+KR KK +   E D +E+ +EDE++E
Subjt:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPRKRTKKPK--TEGDGEEESEEDEEDE

Query:  EEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQS
         E  VIPEVVTNRM+SRMGFSVGIPLLIGLLFFPFFYYLKV LKIDVP+WVP IVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQS
Subjt:  EEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQS

Query:  IWSGGSNK
        IW+    K
Subjt:  IWSGGSNK

A0A6J1GB37 protein PAM68, chloroplastic1.2e-8883.96Show/hide
Query:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPR-KRTKKPKTEGDGEEESE----EDE
        MAAI GSLNLPLAPS LPS+HI RN   SI SKS +RN F LL PS+YQ QTR NH+ I+NATLRSPKGFGPAPR K+ KK K  GDGEEESE    E+E
Subjt:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPR-KRTKKPKTEGDGEEESE----EDE

Query:  EDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVF
        E+EE+  VIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVF
Subjt:  EDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVF

Query:  WQSIWSGGSNKK
        WQSIWSGGSNKK
Subjt:  WQSIWSGGSNKK

A0A6J1KYA4 protein PAM68, chloroplastic2.4e-8984.51Show/hide
Query:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPR-KRTKKPKTE--GDGEEES---EED
        MAAI GSLNLPLAPS LPS+HI R  K SI SKSH+RN F LL PS+YQ QTR NH+ I+NATLRSPKGFGPAPR K+ KK KTE  GDGEEES   E++
Subjt:  MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPR-KRTKKPKTE--GDGEEES---EED

Query:  EEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPV
        EE+EE+  VIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPV
Subjt:  EEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPV

Query:  FWQSIWSGGSNKK
        FWQSIWSGGSNKK
Subjt:  FWQSIWSGGSNKK

SwissProt top hitse value%identityAlignment
O49668 Protein PAM68, chloroplastic2.9e-5570.32Show/hide
Query:  LNATLRSPKGFGPAPR--KRTKKPK------TEGDGEEESEEDEEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPV
        L+AT+ SPKGFGP P+  K++KKPK       + D E+E ++DEEDE E  VIPE+VTNRMISRMGF+VG+PL IGLLFFPFFYYLKV LK+DVP+WVP 
Subjt:  LNATLRSPKGFGPAPR--KRTKKPK------TEGDGEEESEEDEEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPV

Query:  IVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWSGGSNK
        IVSF FFG+AL GVSYGIVSSSWDP+REGSLLGWNEA+KNWPVFWQS W+    +
Subjt:  IVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWSGGSNK

Q9LTD9 Uncharacterized protein PAM68-like7.5e-1137.61Show/hide
Query:  EESEEDEEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEA
        E+    + D E+   IP+ V  RM+ R+  SVG PL +G+        LK     DVP WVP + +   FGS+ LG++YG +S++ DP +  SL G  EA
Subjt:  EESEEDEEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEA

Query:  QKNWPVFWQ
        ++NW   W+
Subjt:  QKNWPVFWQ

Arabidopsis top hitse value%identityAlignment
AT4G19100.1 Protein of unknown function (DUF3464)2.1e-5670.32Show/hide
Query:  LNATLRSPKGFGPAPR--KRTKKPK------TEGDGEEESEEDEEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPV
        L+AT+ SPKGFGP P+  K++KKPK       + D E+E ++DEEDE E  VIPE+VTNRMISRMGF+VG+PL IGLLFFPFFYYLKV LK+DVP+WVP 
Subjt:  LNATLRSPKGFGPAPR--KRTKKPK------TEGDGEEESEEDEEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPV

Query:  IVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWSGGSNK
        IVSF FFG+AL GVSYGIVSSSWDP+REGSLLGWNEA+KNWPVFWQS W+    +
Subjt:  IVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWSGGSNK

AT5G52780.1 Protein of unknown function (DUF3464)5.3e-1237.61Show/hide
Query:  EESEEDEEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEA
        E+    + D E+   IP+ V  RM+ R+  SVG PL +G+        LK     DVP WVP + +   FGS+ LG++YG +S++ DP +  SL G  EA
Subjt:  EESEEDEEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEA

Query:  QKNWPVFWQ
        ++NW   W+
Subjt:  QKNWPVFWQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCATTGCTGGATCGCTCAACCTTCCTCTCGCGCCTTCAAACCTTCCATCAATTCACATTAAGAGAAATTGTAAGTTCTCGATCCATTCGAAAAGCCACGAAAG
GAACCGTTTCCCTCTCTTGACACCGAGCATTTACCAAACCCAAACTCGCATGAACCACTCCACGATTCTAAATGCAACATTGAGAAGTCCAAAGGGATTCGGACCAGCTC
CAAGGAAAAGGACGAAGAAACCCAAAACGGAAGGAGATGGAGAAGAAGAAAGTGAGGAAGATGAGGAAGATGAGGAAGAAGCTAGTGTAATACCAGAAGTAGTGACGAAC
AGGATGATCAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTTTTCCCATTCTTCTATTACCTGAAAGTTGTTTTGAAGATTGATGTGCCTTC
ATGGGTGCCAGTCATTGTGTCATTCTTCTTCTTTGGTTCTGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGTTCTTTATTGG
GTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGAGTGGTGGGTCTAATAAGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCATTGCTGGATCGCTCAACCTTCCTCTCGCGCCTTCAAACCTTCCATCAATTCACATTAAGAGAAATTGTAAGTTCTCGATCCATTCGAAAAGCCACGAAAG
GAACCGTTTCCCTCTCTTGACACCGAGCATTTACCAAACCCAAACTCGCATGAACCACTCCACGATTCTAAATGCAACATTGAGAAGTCCAAAGGGATTCGGACCAGCTC
CAAGGAAAAGGACGAAGAAACCCAAAACGGAAGGAGATGGAGAAGAAGAAAGTGAGGAAGATGAGGAAGATGAGGAAGAAGCTAGTGTAATACCAGAAGTAGTGACGAAC
AGGATGATCAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTTTTCCCATTCTTCTATTACCTGAAAGTTGTTTTGAAGATTGATGTGCCTTC
ATGGGTGCCAGTCATTGTGTCATTCTTCTTCTTTGGTTCTGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGTTCTTTATTGG
GTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGAGTGGTGGGTCTAATAAGAAATAG
Protein sequenceShow/hide protein sequence
MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPRKRTKKPKTEGDGEEESEEDEEDEEEASVIPEVVTN
RMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK