; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017309 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017309
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr5:2020046..2021314
RNA-Seq ExpressionLag0017309
SyntenyLag0017309
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RYE02783.1 reverse transcriptase-like protein, partial [Rickettsiaceae bacterium]2.3e-1331.11Show/hide
Query:  DLVDVIWALREKLGALDFELVTVFWWSVWNLRNS-LCWRGESDGRDLWAWSEEYLRAYHDVVGQRESRCSLQPCPSRPVEQSSWTPPMGGGFKLNTDASV
        D  D I    E L     EL     W +WN RN+ L  R       L  W+  +L  Y      R +     P  +R      WTPP  G   +N DA++
Subjt:  DLVDVIWALREKLGALDFELVTVFWWSVWNLRNS-LCWRGESDGRDLWAWSEEYLRAYHDVVGQRESRCSLQPCPSRPVEQSSWTPPMGGGFKLNTDASV

Query:  RPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDSSEV
          D+G  G GC++RD +G V+ +  L L R +S  LAE +A+++G+EL   +      ++ D L +VR++   VT ++E+
Subjt:  RPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDSSEV

TXG68182.1 hypothetical protein EZV62_003117 [Acer yangbiense]1.0e-1327.27Show/hide
Query:  DFELVTVFWWSVWNLRNSLCWRGESDGRD-LWAWSEEYLRAYHDVVGQRESRCSLQPCPSRPVEQSSWTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDV
        +  L+ +FWW +W LRN+ C   +  G D L AW E +L A+ D      ++  L    +       W PP+ G  K+N DA++  ++G  G G V+RD 
Subjt:  DFELVTVFWWSVWNLRNSLCWRGESDGRD-LWAWSEEYLRAYHDVVGQRESRCSLQPCPSRPVEQSSWTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDV

Query:  SGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDSSEVAVEFGQFENGSD
         G VL +    +   +S  +AE   +++G+ LA     + F ++ D+L +V+++  +    +++ +  G+  +  D
Subjt:  SGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDSSEVAVEFGQFENGSD

XP_015385025.1 uncharacterized protein LOC107176703 [Citrus sinensis]1.3e-1326.4Show/hide
Query:  MWLCSKFSQLYQSLYHLDLVDVIWALREKLGALDFELVTVFWWSVWNLRNSLCWRGES-DGRDLWAWSEEYLRAYHDVVGQRESRCSLQPCPSRPVEQSS
        +W  S  +   Q +   D++ V+ +L +K+   + E V V WW VW+ RN L + G+  +   L A ++  + AY  V G+ ++    +       +Q  
Subjt:  MWLCSKFSQLYQSLYHLDLVDVIWALREKLGALDFELVTVFWWSVWNLRNSLCWRGES-DGRDLWAWSEEYLRAYHDVVGQRESRCSLQPCPSRPVEQSS

Query:  WTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDSSEV
        W PP  G +K+N DA+V  ++   G G V+R+  G +++AA        +V  AE  A+  G+E+AL+    +  +E D + +  + + + +   E+
Subjt:  WTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDSSEV

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]3.3e-2034.48Show/hide
Query:  MWLCSKFSQLYQSLY---HLDLVDVIWALREKLGALDFELVTVFWWSVWNLRNSLCWRGESDG--RDLWAWSEEYLRAYHDVVGQRESRCSLQPCPSRPV
        +W CSKFS     L+     D+   +    + +       + V  W++WN RN         G   DL +WSE YL+ Y     QR S  +L  C  RP 
Subjt:  MWLCSKFSQLYQSLY---HLDLVDVIWALREKLGALDFELVTVFWWSVWNLRNSLCWRGESDG--RDLWAWSEEYLRAYHDVVGQRESRCSLQPCPSRPV

Query:  EQSSWTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDSSE
          + W PP     K+N DA+ R +   AG G ++RD +G V L A   L R   VD  EG+A+ +G+ LA++  F+ F +E DSLR+  +L  +  D SE
Subjt:  EQSSWTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDSSE

Query:  VAV
        V V
Subjt:  VAV

XP_024033533.1 uncharacterized protein LOC112095662 [Citrus clementina]1.7e-1325.89Show/hide
Query:  MWLCSKFSQLYQSLYHLDLVDVIWALREKLGALDFELVTVFWWSVWNLRNSLCWRGES-DGRDLWAWSEEYLRAYHDVVGQRESRCSLQPCPSRPVEQSS
        +W C+      QS+   D++  + +L  K    + + V   WW+ W+ RN L + G+  D R+  A ++  + AY  +  + +      P   +  E   
Subjt:  MWLCSKFSQLYQSLYHLDLVDVIWALREKLGALDFELVTVFWWSVWNLRNSLCWRGES-DGRDLWAWSEEYLRAYHDVVGQRESRCSLQPCPSRPVEQSS

Query:  WTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDSSEV
        W PP     K+N DA+V  +   AG G V+R+  G V++AA   +     V + E  A+  G+E+A +  F +  VE D   +  + + +V++ +E+
Subjt:  WTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDSSEV

TrEMBL top hitse value%identityAlignment
A0A4Q3DBE2 Reverse transcriptase-like protein (Fragment)1.1e-1331.11Show/hide
Query:  DLVDVIWALREKLGALDFELVTVFWWSVWNLRNS-LCWRGESDGRDLWAWSEEYLRAYHDVVGQRESRCSLQPCPSRPVEQSSWTPPMGGGFKLNTDASV
        D  D I    E L     EL     W +WN RN+ L  R       L  W+  +L  Y      R +     P  +R      WTPP  G   +N DA++
Subjt:  DLVDVIWALREKLGALDFELVTVFWWSVWNLRNS-LCWRGESDGRDLWAWSEEYLRAYHDVVGQRESRCSLQPCPSRPVEQSSWTPPMGGGFKLNTDASV

Query:  RPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDSSEV
          D+G  G GC++RD +G V+ +  L L R +S  LAE +A+++G+EL   +      ++ D L +VR++   VT ++E+
Subjt:  RPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDSSEV

A0A5C7IHD9 RNase H domain-containing protein4.9e-1427.27Show/hide
Query:  DFELVTVFWWSVWNLRNSLCWRGESDGRD-LWAWSEEYLRAYHDVVGQRESRCSLQPCPSRPVEQSSWTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDV
        +  L+ +FWW +W LRN+ C   +  G D L AW E +L A+ D      ++  L    +       W PP+ G  K+N DA++  ++G  G G V+RD 
Subjt:  DFELVTVFWWSVWNLRNSLCWRGESDGRD-LWAWSEEYLRAYHDVVGQRESRCSLQPCPSRPVEQSSWTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDV

Query:  SGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDSSEVAVEFGQFENGSD
         G VL +    +   +S  +AE   +++G+ LA     + F ++ D+L +V+++  +    +++ +  G+  +  D
Subjt:  SGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDSSEVAVEFGQFENGSD

A0A6J1DBJ7 uncharacterized protein LOC1110189731.6e-2034.48Show/hide
Query:  MWLCSKFSQLYQSLY---HLDLVDVIWALREKLGALDFELVTVFWWSVWNLRNSLCWRGESDG--RDLWAWSEEYLRAYHDVVGQRESRCSLQPCPSRPV
        +W CSKFS     L+     D+   +    + +       + V  W++WN RN         G   DL +WSE YL+ Y     QR S  +L  C  RP 
Subjt:  MWLCSKFSQLYQSLY---HLDLVDVIWALREKLGALDFELVTVFWWSVWNLRNSLCWRGESDG--RDLWAWSEEYLRAYHDVVGQRESRCSLQPCPSRPV

Query:  EQSSWTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDSSE
          + W PP     K+N DA+ R +   AG G ++RD +G V L A   L R   VD  EG+A+ +G+ LA++  F+ F +E DSLR+  +L  +  D SE
Subjt:  EQSSWTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDSSE

Query:  VAV
        V V
Subjt:  VAV

A0A7J6GAB1 RNase H domain-containing protein9.3e-1329.29Show/hide
Query:  MWLCSKFSQLYQSLYHLDLV--------DVIWALREKLGALDFELVTVFWWSVWNLRNSLCWRGESDGRDLW-AWSEEYLRAYHDVVGQRESRCSLQPCP
        +W CSK   L++    L L         D ++ ++++     F L     W +W+ RN   ++  +    +W  W+   L    D   Q      L    
Subjt:  MWLCSKFSQLYQSLYHLDLV--------DVIWALREKLGALDFELVTVFWWSVWNLRNSLCWRGESDGRDLW-AWSEEYLRAYHDVVGQRESRCSLQPCP

Query:  SRPVEQSSWTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGE
          PV   SW+PP  G FK+NTDAS+   +   G G V+RD  G V++A  + +P C SV++AE  A+  G+ LA +    S C+  D   ++  L+GE
Subjt:  SRPVEQSSWTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGE

A0A803Q8X4 Uncharacterized protein1.6e-1226.77Show/hide
Query:  MWLCSKFSQLYQSLYHLDLV--------DVIWALREKLGALDFELVTVFWWSVWNLRNSLCWRGESDGRDLW-AWSEEYLRAYHDVVGQRESRCSLQPCP
        +W C K   L++    L L         D ++ ++++     F L     W +W+ RN   ++ ++    +W  W+   +    D   Q +S   L P  
Subjt:  MWLCSKFSQLYQSLYHLDLV--------DVIWALREKLGALDFELVTVFWWSVWNLRNSLCWRGESDGRDLW-AWSEEYLRAYHDVVGQRESRCSLQPCP

Query:  SRPVEQSSWTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGE
          PV   SW+PP  G F +N D S+   +   G G V+RD  GAV++A  + +P C S ++AE  A+  G++LA +    + C+  D   ++  L+G+
Subjt:  SRPVEQSSWTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGE

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657502.8e-0629.21Show/hide
Query:  LREKLGALDFELVTVF----WWSVWNLRNSLCWRGESDGRD----LWAWSEEYLRAY--HDVVGQRESRCSLQPCPSRPVEQSSWTPPMGGGFKLNTDAS
        L ++ G  D    T+F    WW  W  R    +   +  RD    +  W+ E  RA+  + +VG  + R               W  P  G  K+NTD +
Subjt:  LREKLGALDFELVTVF----WWSVWNLRNSLCWRGESDGRD----LWAWSEEYLRAY--HDVVGQRESRCSLQPCPSRPVEQSSWTPPMGGGFKLNTDAS

Query:  VRPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDS
         R + G A  G VLRD +GA      L++ RC S   AE W +  G+  A +       +EVDS  +V  L   ++DS
Subjt:  VRPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDS

Arabidopsis top hitse value%identityAlignment
AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-0731.87Show/hide
Query:  VFWWSVWNLRNSLCWRGESDGRD----LWAWSEEYLRAY--HDVVGQRESRCSLQPCPSRPVEQSSWTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDVS
        + WW  W  R S  +   +  RD    +  W  E  RA+  + +VG      S QP   R +    W  P  G  K+NTD + R + G A  G VLRD  
Subjt:  VFWWSVWNLRNSLCWRGESDGRD----LWAWSEEYLRAY--HDVVGQRESRCSLQPCPSRPVEQSSWTPPMGGGFKLNTDASVRPDKGEAGGGCVLRDVS

Query:  GAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDS
        GA      L++ RC S   AE W +  G+  A +       +EVDS  +V  L   ++DS
Subjt:  GAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCTCTGCTCGAAATTTTCTCAGCTATACCAGTCGTTATACCATCTGGATCTTGTTGATGTCATCTGGGCATTGAGGGAGAAGTTGGGCGCATTAGACTTTGAGCT
TGTGACAGTGTTCTGGTGGTCAGTTTGGAATTTACGTAACAGTTTGTGTTGGAGGGGAGAATCTGATGGTCGGGATTTGTGGGCATGGTCTGAAGAGTATCTGAGGGCGT
ACCATGATGTTGTCGGGCAGCGGGAGTCTCGCTGCAGTTTGCAGCCTTGCCCCAGTCGGCCAGTCGAGCAGTCTTCATGGACTCCCCCGATGGGCGGTGGTTTCAAGCTG
AACACCGATGCCTCGGTCAGGCCTGATAAGGGTGAAGCGGGGGGAGGTTGTGTTCTTCGGGATGTGTCTGGTGCAGTGCTTCTAGCGGCATGTTTGGACCTGCCCAGGTG
TTGGAGTGTGGATCTGGCTGAAGGTTGGGCACTGGTGAAGGGCGTGGAGTTAGCGTTACAGATGTGTTTCTTAAGTTTCTGTGTCGAAGTGGATTCATTAAGGCTGGTTC
GAATTCTACATGGGGAGGTGACTGATTCTTCAGAGGTGGCGGTTGAGTTTGGGCAGTTCGAGAACGGGAGCGACCCAAGGAAACATCTGTACTGGAATACGATCAGACTG
AGTAGCGACAACCACTACCCAATACCGGCGTGCAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGCTCTGCTCGAAATTTTCTCAGCTATACCAGTCGTTATACCATCTGGATCTTGTTGATGTCATCTGGGCATTGAGGGAGAAGTTGGGCGCATTAGACTTTGAGCT
TGTGACAGTGTTCTGGTGGTCAGTTTGGAATTTACGTAACAGTTTGTGTTGGAGGGGAGAATCTGATGGTCGGGATTTGTGGGCATGGTCTGAAGAGTATCTGAGGGCGT
ACCATGATGTTGTCGGGCAGCGGGAGTCTCGCTGCAGTTTGCAGCCTTGCCCCAGTCGGCCAGTCGAGCAGTCTTCATGGACTCCCCCGATGGGCGGTGGTTTCAAGCTG
AACACCGATGCCTCGGTCAGGCCTGATAAGGGTGAAGCGGGGGGAGGTTGTGTTCTTCGGGATGTGTCTGGTGCAGTGCTTCTAGCGGCATGTTTGGACCTGCCCAGGTG
TTGGAGTGTGGATCTGGCTGAAGGTTGGGCACTGGTGAAGGGCGTGGAGTTAGCGTTACAGATGTGTTTCTTAAGTTTCTGTGTCGAAGTGGATTCATTAAGGCTGGTTC
GAATTCTACATGGGGAGGTGACTGATTCTTCAGAGGTGGCGGTTGAGTTTGGGCAGTTCGAGAACGGGAGCGACCCAAGGAAACATCTGTACTGGAATACGATCAGACTG
AGTAGCGACAACCACTACCCAATACCGGCGTGCAGATAG
Protein sequenceShow/hide protein sequence
MWLCSKFSQLYQSLYHLDLVDVIWALREKLGALDFELVTVFWWSVWNLRNSLCWRGESDGRDLWAWSEEYLRAYHDVVGQRESRCSLQPCPSRPVEQSSWTPPMGGGFKL
NTDASVRPDKGEAGGGCVLRDVSGAVLLAACLDLPRCWSVDLAEGWALVKGVELALQMCFLSFCVEVDSLRLVRILHGEVTDSSEVAVEFGQFENGSDPRKHLYWNTIRL
SSDNHYPIPACR