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Lag0017325 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017325
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionUnknown protein
Genome locationchr5:2169596..2172790
RNA-Seq ExpressionLag0017325
SyntenyLag0017325
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8391778.1 hypothetical protein HHK36_022012 [Tetracentron sinense]6.2e-0538.89Show/hide
Query:  SKAILEGIKSIVNTRENLQIPLE-------MESDSMETVKVLTGKSEDWSEMSLFVDEIQALSLHFKSIAFLHCNREGNRLAHLVARKPI
        S A++E I +    RE L+  LE       +ESDS+ T+  LT + E+ S  SL +D+++ L L F   +F H +REGN +AH +ARK +
Subjt:  SKAILEGIKSIVNTRENLQIPLE-------MESDSMETVKVLTGKSEDWSEMSLFVDEIQALSLHFKSIAFLHCNREGNRLAHLVARKPI
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCAAAGGCGATTTTAGAAGGGATTAAATCGATTGTCAATACCCGTGAGAATCTCCAAATCCCCCTGGAGATGGAATCGGATTCCATGGAAACGGTGAAAGTCCT
GACGGGGAAGTCAGAAGACTGGTCGGAGATGAGTTTGTTCGTCGACGAGATTCAGGCTCTCTCCTTGCACTTCAAATCCATCGCTTTCCTTCATTGCAACAGAGAAGGAA
ATCGATTAGCGCACTTAGTAGCGAGAAAGCCAATTGATTTCGATTTTGGTTCTCTCTCTCCCGCGTTGCTACCATGCCGTCGGCGCCTCCTCTATAGCAGACCGTCGCAC
GCCGCGCCGCCCCTCCGTGAGCTCTCTCTCTTTCTCCCTTCTCCGTCTCATGTTGTAGCAGCGTGGGTGACGTGTTTAGCATTGTTTTCCGACAGCAACACTCAAGCTTA
CTCATTCAATTCCGACGATTCAAGCAGTGGGTCTTCAAGTTTCAGCGTGTTTGAGCAATTCCGACTTTGGGTTCTCTTAGCTTTTGGGGATTTAATCGTCGGTTTGGAGC
GTTGTTGGATCATTGGACAGCAAACGGTGTTTCTGTTTTGGGTAGAGGTAAAGGTGTACAGAACGCGTGACGGAGAGCTGCTGAGCCATGGATCTCCTTTAGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATCAAAGGCGATTTTAGAAGGGATTAAATCGATTGTCAATACCCGTGAGAATCTCCAAATCCCCCTGGAGATGGAATCGGATTCCATGGAAACGGTGAAAGTCCT
GACGGGGAAGTCAGAAGACTGGTCGGAGATGAGTTTGTTCGTCGACGAGATTCAGGCTCTCTCCTTGCACTTCAAATCCATCGCTTTCCTTCATTGCAACAGAGAAGGAA
ATCGATTAGCGCACTTAGTAGCGAGAAAGCCAATTGATTTCGATTTTGGTTCTCTCTCTCCCGCGTTGCTACCATGCCGTCGGCGCCTCCTCTATAGCAGACCGTCGCAC
GCCGCGCCGCCCCTCCGTGAGCTCTCTCTCTTTCTCCCTTCTCCGTCTCATGTTGTAGCAGCGTGGGTGACGTGTTTAGCATTGTTTTCCGACAGCAACACTCAAGCTTA
CTCATTCAATTCCGACGATTCAAGCAGTGGGTCTTCAAGTTTCAGCGTGTTTGAGCAATTCCGACTTTGGGTTCTCTTAGCTTTTGGGGATTTAATCGTCGGTTTGGAGC
GTTGTTGGATCATTGGACAGCAAACGGTGTTTCTGTTTTGGGTAGAGGTAAAGGTGTACAGAACGCGTGACGGAGAGCTGCTGAGCCATGGATCTCCTTTAGGATAG
Protein sequenceShow/hide protein sequence
MESKAILEGIKSIVNTRENLQIPLEMESDSMETVKVLTGKSEDWSEMSLFVDEIQALSLHFKSIAFLHCNREGNRLAHLVARKPIDFDFGSLSPALLPCRRRLLYSRPSH
AAPPLRELSLFLPSPSHVVAAWVTCLALFSDSNTQAYSFNSDDSSSGSSSFSVFEQFRLWVLLAFGDLIVGLERCWIIGQQTVFLFWVEVKVYRTRDGELLSHGSPLG