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Lag0017332 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017332
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationchr5:2314355..2320045
RNA-Seq ExpressionLag0017332
SyntenyLag0017332
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039122.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.2e-1082.22Show/hide
Query:  VRFLCGGAISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL
        V  L GGAISWKSTKQTCIARSTMESEFI LELARQEAEW+++L+
Subjt:  VRFLCGGAISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL

KAA0054462.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.8e-1086.36Show/hide
Query:  FLCGG-AISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL
        FL GG AISWKSTKQTCIARSTMESEFI LELARQEAEW+++LL
Subjt:  FLCGG-AISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL

KAA0056672.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.2e-1084.44Show/hide
Query:  VRFLCGGAISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL
        V  L GGAISWKSTKQTCIARSTMESEFIVLELA QEAEW+++LL
Subjt:  VRFLCGGAISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL

TYK26791.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.0e-1084.44Show/hide
Query:  VRFLCGGAISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL
        V  L GGAISWKSTKQTCIARSTMESEFI LELARQEAEW+++LL
Subjt:  VRFLCGGAISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL

XP_027936188.1 uncharacterized protein LOC114191208 [Vigna unguiculata]2.2e-1067.21Show/hide
Query:  LCGGAISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL------------PCIVIHK
        L GGA+SWKS+KQTCIARSTMESEFI LELA QEAEWL++LL             CIVIHK
Subjt:  LCGGAISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL------------PCIVIHK

TrEMBL top hitse value%identityAlignment
A0A5A7U7W6 Retrovirus-related Pol polyprotein from transposon TNT 1-943.1e-1082.22Show/hide
Query:  VRFLCGGAISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL
        V  L GGAISWKSTKQTCIARSTMESEFI LELA QEAEW+++LL
Subjt:  VRFLCGGAISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL

A0A5A7UFB4 Ty1-copia retrotransposon protein1.8e-1086.36Show/hide
Query:  FLCGG-AISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL
        FL GG AISWKSTKQTCIARSTMESEFI LELARQEAEW+++LL
Subjt:  FLCGG-AISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL

A0A5A7ULG5 Ty1-copia retrotransposon protein1.1e-1084.44Show/hide
Query:  VRFLCGGAISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL
        V  L GGAISWKSTKQTCIARSTMESEFIVLELA QEAEW+++LL
Subjt:  VRFLCGGAISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL

A0A5D3DSQ3 Ty1-copia retrotransposon protein4.8e-1184.44Show/hide
Query:  VRFLCGGAISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL
        V  L GGAISWKSTKQTCIARSTMESEFI LELARQEAEW+++LL
Subjt:  VRFLCGGAISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL

A0A5D3DTE2 Ty1-copia retrotransposon protein1.1e-1082.22Show/hide
Query:  VRFLCGGAISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL
        V  L GGAISWKSTKQTCIARSTMESEFI LELARQEAEW+++L+
Subjt:  VRFLCGGAISWKSTKQTCIARSTMESEFIVLELARQEAEWLRSLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAACCCGCCAGAGCGAGTGTCGCAACGTCATCGCGACGCGGAGCGGCCGACGTCCTTTCCTAAGGATCTCTTTCGAGGAGCCTTGTTGGAAATAAAAAAAGCGGC
GGCACGGTGGCGGTACGGCAGTGGCGGCGGCGACAGTGGTGGCGGCAACGGCGGTACGGCAGTGAGTGGCGGCGTCGGTACGACGGTGAGTGGCGGCGGCGGTACGGTGG
TATGTGTTCGTTTTTTGTGTGGAGGAGCTATATCATGGAAATCCACAAAGCAGACGTGCATTGCGCGATCCACCATGGAGTCTGAGTTTATAGTTCTCGAGCTTGCAAGG
CAAGAGGCGGAGTGGTTGAGAAGTCTACTTCCTTGCATTGTGATTCACAAGCAGCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGAACCCGCCAGAGCGAGTGTCGCAACGTCATCGCGACGCGGAGCGGCCGACGTCCTTTCCTAAGGATCTCTTTCGAGGAGCCTTGTTGGAAATAAAAAAAGCGGC
GGCACGGTGGCGGTACGGCAGTGGCGGCGGCGACAGTGGTGGCGGCAACGGCGGTACGGCAGTGAGTGGCGGCGTCGGTACGACGGTGAGTGGCGGCGGCGGTACGGTGG
TATGTGTTCGTTTTTTGTGTGGAGGAGCTATATCATGGAAATCCACAAAGCAGACGTGCATTGCGCGATCCACCATGGAGTCTGAGTTTATAGTTCTCGAGCTTGCAAGG
CAAGAGGCGGAGTGGTTGAGAAGTCTACTTCCTTGCATTGTGATTCACAAGCAGCCATAG
Protein sequenceShow/hide protein sequence
MLNPPERVSQRHRDAERPTSFPKDLFRGALLEIKKAAARWRYGSGGGDSGGGNGGTAVSGGVGTTVSGGGGTVVCVRFLCGGAISWKSTKQTCIARSTMESEFIVLELAR
QEAEWLRSLLPCIVIHKQP