; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017335 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017335
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H protein
Genome locationchr5:2395120..2395662
RNA-Seq ExpressionLag0017335
SyntenyLag0017335
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4313148.1 unnamed protein product [Prunus armeniaca]3.7e-1131.71Show/hide
Query:  IWNHRNLVKQKTTIADPNVIFRSIEANMNGSNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKV
        IW  RN V      ADP      +   ++    ++  L      P    SP+ QSW  PPP + K+N DA+WS ++  GG+GW++ DS G  + AG    
Subjt:  IWNHRNLVKQKTTIADPNVIFRSIEANMNGSNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKV

Query:  QKNWSILCLELKAIEEGL-RCLLVKFGNPLPKIIVESDSAEAVEILNHASEIFSEGRSVAIDVE
            S L +EL AI   L  C      N    +IVESDS   + +LN    + S+   +  D++
Subjt:  QKNWSILCLELKAIEEGL-RCLLVKFGNPLPKIIVESDSAEAVEILNHASEIFSEGRSVAIDVE

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]1.3e-1345.74Show/hide
Query:  LSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEIL
        L   WS PP N WK+NTDASWSEE+ VGG+GWI+ D  G  +LAG  K+++   I  LEL  I  GL+ + ++  +P   I +ESDS E + ++
Subjt:  LSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEIL

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.4e-1030.82Show/hide
Query:  KAISIISSIWNHRNLVKQKTTIADPNVIFRSIEANM-----NGSNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHD
        +++ I   IW  RN    K    +   I  +I+  +       +N      NK   +  R++      W PP  N WK+NT+A+W  +   GG+GWI+ D
Subjt:  KAISIISSIWNHRNLVKQKTTIADPNVIFRSIEANM-----NGSNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHD

Query:  SNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEILN
          G  I A    ++   +I  LE+ AI EGLR +  +   P   I +ESDS EA+ +L+
Subjt:  SNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEILN

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.6e-1134Show/hide
Query:  IWNHRNLVKQKTTIADPNVIFRSIEANMNGSNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKV
        IWNHRN V  +   +  + + + +   +  S++        S +   L + L   W PPP + W +N DASWS+    GG+GWI+   +G  +LAG   V
Subjt:  IWNHRNLVKQKTTIADPNVIFRSIEANMNGSNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKV

Query:  QKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEILNHASE
        +   ++  LE  AI EGLR  L   G  L  + +E+DSAE   +LN   E
Subjt:  QKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEILNHASE

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.4e-1034.71Show/hide
Query:  SNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLP
        +N      NK   +  R+       W PP  N WK+NTDA+W  +   GG+GWI+ D  G  I A    ++   +I  LE+ AI EGLR +  +   P+ 
Subjt:  SNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLP

Query:  K-----IIVESDSAEAVEILN
        +     I +ESDS EA+ +L+
Subjt:  K-----IIVESDSAEAVEILN

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.2e-1030.82Show/hide
Query:  KAISIISSIWNHRNLVKQKTTIADPNVIFRSIEANM-----NGSNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHD
        +++ I   IW  RN    K    +   I  +I+  +       +N      NK   +  R++      W PP  N WK+NT+A+W  +   GG+GWI+ D
Subjt:  KAISIISSIWNHRNLVKQKTTIADPNVIFRSIEANM-----NGSNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHD

Query:  SNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEILN
          G  I A    ++   +I  LE+ AI EGLR +  +   P   I +ESDS EA+ +L+
Subjt:  SNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEILN

A0A6J1CQG0 uncharacterized protein LOC1110132166.5e-1445.74Show/hide
Query:  LSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEIL
        L   WS PP N WK+NTDASWSEE+ VGG+GWI+ D  G  +LAG  K+++   I  LEL  I  GL+ + ++  +P   I +ESDS E + ++
Subjt:  LSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEIL

A0A6J1DNV9 uncharacterized protein LOC1110224038.0e-1234Show/hide
Query:  IWNHRNLVKQKTTIADPNVIFRSIEANMNGSNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKV
        IWNHRN V  +   +  + + + +   +  S++        S +   L + L   W PPP + W +N DASWS+    GG+GWI+   +G  +LAG   V
Subjt:  IWNHRNLVKQKTTIADPNVIFRSIEANMNGSNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKV

Query:  QKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEILNHASE
        +   ++  LE  AI EGLR  L   G  L  + +E+DSAE   +LN   E
Subjt:  QKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEILNHASE

A0A6J1DSV1 uncharacterized protein LOC1110236081.2e-1034.71Show/hide
Query:  SNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLP
        +N      NK   +  R+       W PP  N WK+NTDA+W  +   GG+GWI+ D  G  I A    ++   +I  LE+ AI EGLR +  +   P+ 
Subjt:  SNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLP

Query:  K-----IIVESDSAEAVEILN
        +     I +ESDS EA+ +L+
Subjt:  K-----IIVESDSAEAVEILN

A0A6J5XPQ2 RNase H domain-containing protein1.8e-1131.71Show/hide
Query:  IWNHRNLVKQKTTIADPNVIFRSIEANMNGSNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKV
        IW  RN V      ADP      +   ++    ++  L      P    SP+ QSW  PPP + K+N DA+WS ++  GG+GW++ DS G  + AG    
Subjt:  IWNHRNLVKQKTTIADPNVIFRSIEANMNGSNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKV

Query:  QKNWSILCLELKAIEEGL-RCLLVKFGNPLPKIIVESDSAEAVEILNHASEIFSEGRSVAIDVE
            S L +EL AI   L  C      N    +IVESDS   + +LN    + S+   +  D++
Subjt:  QKNWSILCLELKAIEEGL-RCLLVKFGNPLPKIIVESDSAEAVEILNHASEIFSEGRSVAIDVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.7e-0929.25Show/hide
Query:  IWNHRNLVKQKTTIAD-PNVIFRSIEANMNGSNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNK
        +W  RN +  K    D P V+ R++E   +   +S     +  A  P+++  LS  W  PP  + K NTDA+W  E    G+GWI+ + +G  +  G   
Subjt:  IWNHRNLVKQKTTIAD-PNVIFRSIEANMNGSNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNK

Query:  VQKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEILN
        + +  ++L  EL+A+   +   + +F     +II ESD+   V +LN
Subjt:  VQKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEILN

AT2G46460.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.5e-0430.93Show/hide
Query:  WSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEILNHASEIF
        W+ PP  + K N D S++ E      GWI+ D +G F+ AG        + L  E +A+   L  +   + +   KI  E D+ E +EILN     F
Subjt:  WSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEILNHASEIF

AT4G09775.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1)1.0e-0633.33Show/hide
Query:  SQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVK
        S+ WSPPP  Y K N D+ + + +      WI+ DSNG  I +G  K+Q+++S L  E       L+ + ++
Subjt:  SQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVK

AT4G29090.1 Ribonuclease H-like superfamily protein5.3e-0832.35Show/hide
Query:  PRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEIL
        P++       W PPP  + K NTDA+W+ +    G+GW++ +  G     G   + K  S+L  EL+A+   +  L     N    +I ESDS   +EIL
Subjt:  PRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEIL

Query:  NH
        N+
Subjt:  NH

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.9e-0631.91Show/hide
Query:  WSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEILNHAS
        WSPP  +  K N DAS  E   V GLGWI+ +S G+ I  G  K Q   +    E   +   +  +   +G    K+I E D+     ++N  S
Subjt:  WSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKVQKNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEILNHAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGCTATTAGCATTATCTCAAGCATTTGGAATCATAGGAATTTGGTGAAGCAAAAAACGACAATAGCAGATCCCAATGTGATTTTCAGATCAATTGAAGCTAATAT
GAATGGAAGCAATTTTTCAGAGAACTACCTGAACAAATTCAGTGCGGTCCCTCCAAGATTAAAGAGCCCTTTGAGTCAAAGCTGGTCTCCTCCTCCTCCGAATTACTGGA
AAATAAACACAGATGCATCATGGTCTGAAGAGAAAGGGGTTGGGGGTTTAGGATGGATAGTTCATGACTCAAATGGATCTTTTATCTTAGCTGGTTTCAATAAAGTACAA
AAGAATTGGTCGATCCTTTGCCTGGAATTGAAAGCCATCGAGGAAGGTCTGAGATGCTTACTTGTCAAATTTGGAAATCCTCTCCCCAAAATCATTGTGGAATCGGACTC
AGCAGAGGCGGTAGAAATTCTCAACCATGCGTCTGAAATCTTCTCGGAAGGAAGATCAGTGGCGATCGACGTTGAGGCTGCGGCGGGCTTTTCGACGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGCTATTAGCATTATCTCAAGCATTTGGAATCATAGGAATTTGGTGAAGCAAAAAACGACAATAGCAGATCCCAATGTGATTTTCAGATCAATTGAAGCTAATAT
GAATGGAAGCAATTTTTCAGAGAACTACCTGAACAAATTCAGTGCGGTCCCTCCAAGATTAAAGAGCCCTTTGAGTCAAAGCTGGTCTCCTCCTCCTCCGAATTACTGGA
AAATAAACACAGATGCATCATGGTCTGAAGAGAAAGGGGTTGGGGGTTTAGGATGGATAGTTCATGACTCAAATGGATCTTTTATCTTAGCTGGTTTCAATAAAGTACAA
AAGAATTGGTCGATCCTTTGCCTGGAATTGAAAGCCATCGAGGAAGGTCTGAGATGCTTACTTGTCAAATTTGGAAATCCTCTCCCCAAAATCATTGTGGAATCGGACTC
AGCAGAGGCGGTAGAAATTCTCAACCATGCGTCTGAAATCTTCTCGGAAGGAAGATCAGTGGCGATCGACGTTGAGGCTGCGGCGGGCTTTTCGACGAAGTGA
Protein sequenceShow/hide protein sequence
MKAISIISSIWNHRNLVKQKTTIADPNVIFRSIEANMNGSNFSENYLNKFSAVPPRLKSPLSQSWSPPPPNYWKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFNKVQ
KNWSILCLELKAIEEGLRCLLVKFGNPLPKIIVESDSAEAVEILNHASEIFSEGRSVAIDVEAAAGFSTK