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Lag0017341 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017341
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr5:2468362..2468751
RNA-Seq ExpressionLag0017341
SyntenyLag0017341
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.7e-0634.04Show/hide
Query:  DAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVH---SSIFSNLWKASIPKK
        + WD  ++ WNL+PRRPL DRE+    +L     I     G ++++W+ + KG ++  SAK    S    ERP  +    + +  LWK+ +PKK
Subjt:  DAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVH---SSIFSNLWKASIPKK

KAA0067274.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.8e-0530.43Show/hide
Query:  RDAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVHSSIFSNLWKASIPKK
        ++ WD ++  WN+ PRRPL +RE    E +  S P      G+   LW       +S+ SAK   +  +S  R         +LW++ IP+K
Subjt:  RDAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVHSSIFSNLWKASIPKK

KAA0067709.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.3e-0532.65Show/hide
Query:  KQCQSRDAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVHSSIFSNLWKASIPKKI
        K     D W++T   W+L PRR L D E     +L +S        G D+  W+  S G +S+ S K     S        + + F+NLWK++IPKK+
Subjt:  KQCQSRDAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVHSSIFSNLWKASIPKKI

TYK00226.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.7e-0634.04Show/hide
Query:  DAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVH---SSIFSNLWKASIPKK
        + WD  ++ WNL+PRRPL DRE+    +L     I     G ++++W+ + KG ++  SAK    S    ERP  +    + +  LWK+ +PKK
Subjt:  DAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVH---SSIFSNLWKASIPKK

XP_031744692.1 uncharacterized protein LOC116405125 [Cucumis sativus]2.7e-0837.08Show/hide
Query:  WDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVHSSIFSNLWKASIPKK
        W++  + W+LYPRRPL   E    ED+  S P P P  G D+  W+ ++ G F++ S KL    ++ +E  +    I++NLWK++IPK+
Subjt:  WDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVHSSIFSNLWKASIPKK

TrEMBL top hitse value%identityAlignment
A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein2.7e-0634.04Show/hide
Query:  DAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVH---SSIFSNLWKASIPKK
        + WD  ++ WNL+PRRPL DRE+    +L     I     G ++++W+ + KG ++  SAK    S    ERP  +    + +  LWK+ +PKK
Subjt:  DAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVH---SSIFSNLWKASIPKK

A0A5A7TD61 LINE-1 retrotransposable element ORF2 protein1.2e-0432.26Show/hide
Query:  RDAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVHSSIFSNLWKASIPKKI
        +D W+  ++ W++  +RPL D EV    D+      P    G  S +W  +  G F IVS K     + S        +IF  LWK+ IPKK+
Subjt:  RDAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVHSSIFSNLWKASIPKKI

A0A5A7VIU9 LINE-1 retrotransposable element ORF2 protein2.3e-0530.43Show/hide
Query:  RDAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVHSSIFSNLWKASIPKK
        ++ WD ++  WN+ PRRPL +RE    E +  S P      G+   LW       +S+ SAK   +  +S  R         +LW++ IP+K
Subjt:  RDAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVHSSIFSNLWKASIPKK

A0A5A7VRD2 LINE-1 retrotransposable element ORF2 protein3.0e-0532.65Show/hide
Query:  KQCQSRDAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVHSSIFSNLWKASIPKKI
        K     D W++T   W+L PRR L D E     +L +S        G D+  W+  S G +S+ S K     S        + + F+NLWK++IPKK+
Subjt:  KQCQSRDAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVHSSIFSNLWKASIPKKI

A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein2.7e-0634.04Show/hide
Query:  DAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVH---SSIFSNLWKASIPKK
        + WD  ++ WNL+PRRPL DRE+    +L     I     G ++++W+ + KG ++  SAK    S    ERP  +    + +  LWK+ +PKK
Subjt:  DAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVH---SSIFSNLWKASIPKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACAAAATTTGTTTCTGGTTCGACTCGTGGACTGATGTGGGCCCATTACAAGTTCATCCTCGGCTTTTTGCTCTATCCAGCAAGAAAACAATGTCAGTCTCGGGA
TGCTTGGGACTCTACTTCTTCTTCATGGAACCTTTATCCCAGAAGGCCGTTGTTAGACAGGGAGGTCTGCGCTCAAGAAGATTTGGTCTCCTCTTTCCCAATCCCTGCTC
CTTTGGAAGGGGTGGATTCCTTGCTTTGGTCAAGCGATTCCAAAGGTTGTTTTTCCATCGTCTCAGCTAAGCTATTCTTTTGGTCATCTTCTTCTGAGGAGCGTCCTCAA
GTGCATTCGAGTATTTTCTCCAACCTTTGGAAGGCCTCAATTCCAAAGAAGATTAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAACAAAATTTGTTTCTGGTTCGACTCGTGGACTGATGTGGGCCCATTACAAGTTCATCCTCGGCTTTTTGCTCTATCCAGCAAGAAAACAATGTCAGTCTCGGGA
TGCTTGGGACTCTACTTCTTCTTCATGGAACCTTTATCCCAGAAGGCCGTTGTTAGACAGGGAGGTCTGCGCTCAAGAAGATTTGGTCTCCTCTTTCCCAATCCCTGCTC
CTTTGGAAGGGGTGGATTCCTTGCTTTGGTCAAGCGATTCCAAAGGTTGTTTTTCCATCGTCTCAGCTAAGCTATTCTTTTGGTCATCTTCTTCTGAGGAGCGTCCTCAA
GTGCATTCGAGTATTTTCTCCAACCTTTGGAAGGCCTCAATTCCAAAGAAGATTAATTAG
Protein sequenceShow/hide protein sequence
MATKFVSGSTRGLMWAHYKFILGFLLYPARKQCQSRDAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQ
VHSSIFSNLWKASIPKKIN