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Lag0017383 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017383
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr5:3034154..3034561
RNA-Seq ExpressionLag0017383
SyntenyLag0017383
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR35143.1 hypothetical protein CICLE_v10007098mg, partial [Citrus clementina]8.6e-0528.83Show/hide
Query:  MTTAQFVGHFLGSVELDEAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIEGLLLISRSTNQVANTLVSYARSN
        MT + +   F G +EL EA  I EG+KLA+ +G+ P+ +E+D + + +L+      + E   +I++I  +   + +  +  I RS N VA+ +V      
Subjt:  MTTAQFVGHFLGSVELDEAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIEGLLLISRSTNQVANTLVSYARSN

Query:  RVDGVWLEEAP
            +W++E P
Subjt:  RVDGVWLEEAP

ESR40694.1 hypothetical protein CICLE_v10027161mg, partial [Citrus clementina]6.6e-0531.58Show/hide
Query:  FLGSVELDEAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIE-GLLLISRSTNQVANTLVSYARSNRVDGVWLE
        F   +E  EA+ +H G++L   IG+ P  +E+D   +  L++       E   LI+D+Q+  ++ E    +    RS N+VA+ L   A  N ++ VWLE
Subjt:  FLGSVELDEAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIE-GLLLISRSTNQVANTLVSYARSNRVDGVWLE

Query:  EAPSWVNHVVRKDR
        E P+ +   V KD+
Subjt:  EAPSWVNHVVRKDR

GAY41190.1 hypothetical protein CUMW_057530 [Citrus unshiu]6.6e-0528.83Show/hide
Query:  MTTAQFVGHFLGSVELDEAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIEGLLLISRSTNQVANTLVSYARSN
        MT + +   F G +EL EA  I EG+KLA+++G+ P+ +E+D + + +L+      + E   +I++I  +   + +  +  I RS N VA+ +V      
Subjt:  MTTAQFVGHFLGSVELDEAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIEGLLLISRSTNQVANTLVSYARSN

Query:  RVDGVWLEEAP
            +W++E P
Subjt:  RVDGVWLEEAP

TXG69190.1 hypothetical protein EZV62_004125 [Acer yangbiense]7.3e-0429.81Show/hide
Query:  EAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIEGLLLISRSTNQVANTLVSYARSNRVDGVWLEEAPSWVNHV
        EA+ +  G +LA   G+CP  +E+D L +  L++ ++    E   +++DI    +N     +  + R TN VA++L   + S   + VWLE+ P  V  +
Subjt:  EAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIEGLLLISRSTNQVANTLVSYARSNRVDGVWLEEAPSWVNHV

Query:  VRKD
        V  D
Subjt:  VRKD

TrEMBL top hitse value%identityAlignment
A0A2H5NM01 RNase H domain-containing protein3.2e-0528.83Show/hide
Query:  MTTAQFVGHFLGSVELDEAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIEGLLLISRSTNQVANTLVSYARSN
        MT + +   F G +EL EA  I EG+KLA+++G+ P+ +E+D + + +L+      + E   +I++I  +   + +  +  I RS N VA+ +V      
Subjt:  MTTAQFVGHFLGSVELDEAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIEGLLLISRSTNQVANTLVSYARSN

Query:  RVDGVWLEEAP
            +W++E P
Subjt:  RVDGVWLEEAP

A0A2N9I609 Uncharacterized protein1.4e-0528.07Show/hide
Query:  HFLGSVELDEAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIEGLLLISRSTNQVANTLVSYARSNRVDG-VWL
        H L  V+  EAI +HE V+LA+ +G+  + +E D L+++Q +   +     +  +I D+ Q  ++ +  G   + R +N+VA+ L     +   D  VWL
Subjt:  HFLGSVELDEAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIEGLLLISRSTNQVANTLVSYARSNRVDG-VWL

Query:  EEAPSWVNHVVRKD
        E+ P ++  V++ +
Subjt:  EEAPSWVNHVVRKD

A0A5C7IIT4 Uncharacterized protein3.5e-0429.81Show/hide
Query:  EAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIEGLLLISRSTNQVANTLVSYARSNRVDGVWLEEAPSWVNHV
        EA+ +  G +LA   G+CP  +E+D L +  L++ ++    E   +++DI    +N     +  + R TN VA++L   + S   + VWLE+ P  V  +
Subjt:  EAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIEGLLLISRSTNQVANTLVSYARSNRVDGVWLEEAPSWVNHV

Query:  VRKD
        V  D
Subjt:  VRKD

V4RLS8 RNase H domain-containing protein (Fragment)4.1e-0528.83Show/hide
Query:  MTTAQFVGHFLGSVELDEAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIEGLLLISRSTNQVANTLVSYARSN
        MT + +   F G +EL EA  I EG+KLA+ +G+ P+ +E+D + + +L+      + E   +I++I  +   + +  +  I RS N VA+ +V      
Subjt:  MTTAQFVGHFLGSVELDEAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIEGLLLISRSTNQVANTLVSYARSN

Query:  RVDGVWLEEAP
            +W++E P
Subjt:  RVDGVWLEEAP

V4UMR3 RNase H domain-containing protein (Fragment)3.2e-0531.58Show/hide
Query:  FLGSVELDEAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIE-GLLLISRSTNQVANTLVSYARSNRVDGVWLE
        F   +E  EA+ +H G++L   IG+ P  +E+D   +  L++       E   LI+D+Q+  ++ E    +    RS N+VA+ L   A  N ++ VWLE
Subjt:  FLGSVELDEAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIE-GLLLISRSTNQVANTLVSYARSNRVDGVWLE

Query:  EAPSWVNHVVRKDR
        E P+ +   V KD+
Subjt:  EAPSWVNHVVRKDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACTGCTCAATTTGTTGGTCATTTTCTTGGATCAGTAGAATTGGATGAAGCTATAACAATCCATGAAGGGGTCAAACTTGCAAAATCCATAGGAATATGTCCAAT
ATGGATGGAAACCGACCCCCTCATCATGTGGCAGTTGGTTCATTGTGTTGAAACACATGATGATGAATTTCATAGCTTAATCAATGATATCCAACAATACGAAAACAACA
GGGAGATAGAAGGTCTTTTATTAATCTCTAGATCGACGAATCAAGTTGCCAACACGTTAGTGTCATATGCCCGAAGCAACCGAGTCGATGGCGTTTGGCTTGAAGAGGCT
CCAAGCTGGGTGAATCATGTTGTTCGTAAAGATAGAAAAGGTGAAAGACATAGAGCTCCGACCGAAGTCCTTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAACTGCTCAATTTGTTGGTCATTTTCTTGGATCAGTAGAATTGGATGAAGCTATAACAATCCATGAAGGGGTCAAACTTGCAAAATCCATAGGAATATGTCCAAT
ATGGATGGAAACCGACCCCCTCATCATGTGGCAGTTGGTTCATTGTGTTGAAACACATGATGATGAATTTCATAGCTTAATCAATGATATCCAACAATACGAAAACAACA
GGGAGATAGAAGGTCTTTTATTAATCTCTAGATCGACGAATCAAGTTGCCAACACGTTAGTGTCATATGCCCGAAGCAACCGAGTCGATGGCGTTTGGCTTGAAGAGGCT
CCAAGCTGGGTGAATCATGTTGTTCGTAAAGATAGAAAAGGTGAAAGACATAGAGCTCCGACCGAAGTCCTTGTTTAG
Protein sequenceShow/hide protein sequence
MTTAQFVGHFLGSVELDEAITIHEGVKLAKSIGICPIWMETDPLIMWQLVHCVETHDDEFHSLINDIQQYENNREIEGLLLISRSTNQVANTLVSYARSNRVDGVWLEEA
PSWVNHVVRKDRKGERHRAPTEVLV