; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017397 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017397
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSWIM-type domain-containing protein
Genome locationchr5:3216707..3217299
RNA-Seq ExpressionLag0017397
SyntenyLag0017397
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032265.1 MuDRA-like transposase [Cucumis melo var. makuwa]2.7e-2741.45Show/hide
Query:  IRDQIAMGRSMQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDD
        IR  +   RS  VN V  V+FQV+DG     V L    CSC  WD+ EIPC+HA +V+ S +L+   ++  +Y  + L + Y GL+ P+GN + W + + 
Subjt:  IRDQIAMGRSMQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDD

Query:  IKKYISSPPNVKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAP
            +  PP  +R  GRP+K RIPS  E  + +KC RC R+GHN +TCRF P
Subjt:  IKKYISSPPNVKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAP

KAA0051992.1 protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa]7.1e-2845.68Show/hide
Query:  NDSE-NYMDFELSI--FIRDQIAMGRSMQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYS
        ND++    DF  +I   +R+QI + RSM+VN V+N+++QVI+GTSQ+ ++L                               K ++S  YLNSTLSS Y 
Subjt:  NDSE-NYMDFELSI--FIRDQIAMGRSMQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYS

Query:  GLIHPLGNESSWHIPDDIKKYISSPPNVKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNK
         +I+PLG+   W IPDDI   +  PPNVKR+VGRPKK +I S +EFKRRVKCGRCGR+GHN+
Subjt:  GLIHPLGNESSWHIPDDIKKYISSPPNVKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNK

PON58068.1 Zinc finger, PMZ-type [Trema orientale]2.1e-2742.96Show/hide
Query:  MQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDDIKKYISSPPN
        M+V     + F+ I+GT+  +V+L  + CSC  + + E+PCSHA  V   KHLS  +Y S +Y   T+ + Y G +HP+GN   W IP+ I +     P 
Subjt:  MQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDDIKKYISSPPN

Query:  VKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAP
         KR  GRPKK RIPS  E K + +CGRC   GHN+ TCR  P
Subjt:  VKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAP

XP_022155207.1 uncharacterized protein LOC111022347 [Momordica charantia]1.2e-2747.83Show/hide
Query:  DNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDDIKKYISSPPNVKRSVG
        ++V FQ+   T   +  L+ +  +CR   +  +        +  KHL  K Y+S++Y N+ LSS YSG IHPLG++SSW+IP+D+K      PNVKR  G
Subjt:  DNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDDIKKYISSPPNVKRSVG

Query:  RPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAPTQ
        RPKK RIPS +EFK+RVKC RCGR GHN+K+C+F+ TQ
Subjt:  RPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAPTQ

XP_038880504.1 uncharacterized protein LOC120072166 [Benincasa hispida]1.3e-2943.83Show/hide
Query:  NYMDFELSIFIRDQIAMGRSMQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLG
        ++ +FEL    R+Q    RS +V+ ++N +++VIDG +   V+L  + CSCR+WD++EIPC+HAC V+   +L +  ++ ++Y  STL S Y G ++P+G
Subjt:  NYMDFELSIFIRDQIAMGRSMQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLG

Query:  NESSWHIPDDIKKYISSPPNVKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAP
        N S W   D     +  PP VKR VGRP+K RI S  E KR  KC RC R GHN +TC+F P
Subjt:  NESSWHIPDDIKKYISSPPNVKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAP

TrEMBL top hitse value%identityAlignment
A0A2P5CAJ9 Zinc finger, PMZ-type1.0e-2742.96Show/hide
Query:  MQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDDIKKYISSPPN
        M+V     + F+ I+GT+  +V+L  + CSC  + + E+PCSHA  V   KHLS  +Y S +Y   T+ + Y G +HP+GN   W IP+ I +     P 
Subjt:  MQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDDIKKYISSPPN

Query:  VKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAP
         KR  GRPKK RIPS  E K + +CGRC   GHN+ TCR  P
Subjt:  VKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAP

A0A5A7SST5 MuDRA-like transposase1.3e-2741.45Show/hide
Query:  IRDQIAMGRSMQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDD
        IR  +   RS  VN V  V+FQV+DG     V L    CSC  WD+ EIPC+HA +V+ S +L+   ++  +Y  + L + Y GL+ P+GN + W + + 
Subjt:  IRDQIAMGRSMQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDD

Query:  IKKYISSPPNVKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAP
            +  PP  +R  GRP+K RIPS  E  + +KC RC R+GHN +TCRF P
Subjt:  IKKYISSPPNVKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAP

A0A5D3BVP4 SWIM-type domain-containing protein1.3e-2742.76Show/hide
Query:  IRDQIAMGRSMQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDD
        IR  +   RS  VN V  V+FQV+DG     V L    CSC  WD+ EIPC+HA +V+ S +L+   ++S +Y  + LS+ Y GL+ P+GN + W + + 
Subjt:  IRDQIAMGRSMQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDD

Query:  IKKYISSPPNVKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAP
            +  PP  +R  GRP+K RIPS  E  +  KC RC R GHN +TCRF P
Subjt:  IKKYISSPPNVKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAP

A0A5D3C2C0 Protein FAR1-RELATED SEQUENCE 3-like3.5e-2845.68Show/hide
Query:  NDSE-NYMDFELSI--FIRDQIAMGRSMQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYS
        ND++    DF  +I   +R+QI + RSM+VN V+N+++QVI+GTSQ+ ++L                               K ++S  YLNSTLSS Y 
Subjt:  NDSE-NYMDFELSI--FIRDQIAMGRSMQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYS

Query:  GLIHPLGNESSWHIPDDIKKYISSPPNVKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNK
         +I+PLG+   W IPDDI   +  PPNVKR+VGRPKK +I S +EFKRRVKCGRCGR+GHN+
Subjt:  GLIHPLGNESSWHIPDDIKKYISSPPNVKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNK

A0A6J1DNQ8 uncharacterized protein LOC1110223475.9e-2847.83Show/hide
Query:  DNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDDIKKYISSPPNVKRSVG
        ++V FQ+   T   +  L+ +  +CR   +  +        +  KHL  K Y+S++Y N+ LSS YSG IHPLG++SSW+IP+D+K      PNVKR  G
Subjt:  DNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDDIKKYISSPPNVKRSVG

Query:  RPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAPTQ
        RPKK RIPS +EFK+RVKC RCGR GHN+K+C+F+ TQ
Subjt:  RPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAPTQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64260.1 MuDR family transposase3.4e-0422.66Show/hide
Query:  SENYMDFELSIFIRDQIAMGRSMQVNSVDNVQFQVIDGTSQHD--VHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLI
        +E +MD +L  F+ D I       +  ++   F+V + + + +  V L    C+CR +   + PC HA  V     ++  +Y+   Y        Y+   
Subjt:  SENYMDFELSIFIRDQIAMGRSMQVNSVDNVQFQVIDGTSQHD--VHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLI

Query:  HPLGNESSWHIPDDIKKYISSPPNVKRS
         P+ + ++W  P+D +     PP+ + S
Subjt:  HPLGNESSWHIPDDIKKYISSPPNVKRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCACGATGGTCATTGGAACGATAGTGAGAATTATATGGACTTTGAACTCTCGATATTTATAAGAGATCAAATTGCAATGGGTCGTTCGATGCAGGTCAATTCAGT
AGACAATGTCCAATTTCAAGTAATAGATGGTACTAGTCAACACGATGTTCATTTAACAGCCAGAAGATGCAGTTGTAGGATGTGGGACATTTTGGAGATTCCATGTTCTC
ATGCATGTGTCGTTTTGACTTCGAAGCACTTGTCTATGAAGGAGTATATATCAAATTTCTACTTGAATAGTACTCTCTCTTCAATATACAGTGGTCTAATCCATCCATTA
GGCAATGAGTCTAGTTGGCATATCCCCGATGACATAAAAAAATATATCAGTTCTCCCCCAAACGTTAAGCGTTCCGTTGGTAGGCCAAAGAAGACCAGAATCCCCTCACA
TATGGAGTTCAAAAGACGGGTTAAATGTGGTCGTTGTGGCAGGATTGGGCATAATAAGAAGACTTGCAGATTTGCACCAACTCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGCACGATGGTCATTGGAACGATAGTGAGAATTATATGGACTTTGAACTCTCGATATTTATAAGAGATCAAATTGCAATGGGTCGTTCGATGCAGGTCAATTCAGT
AGACAATGTCCAATTTCAAGTAATAGATGGTACTAGTCAACACGATGTTCATTTAACAGCCAGAAGATGCAGTTGTAGGATGTGGGACATTTTGGAGATTCCATGTTCTC
ATGCATGTGTCGTTTTGACTTCGAAGCACTTGTCTATGAAGGAGTATATATCAAATTTCTACTTGAATAGTACTCTCTCTTCAATATACAGTGGTCTAATCCATCCATTA
GGCAATGAGTCTAGTTGGCATATCCCCGATGACATAAAAAAATATATCAGTTCTCCCCCAAACGTTAAGCGTTCCGTTGGTAGGCCAAAGAAGACCAGAATCCCCTCACA
TATGGAGTTCAAAAGACGGGTTAAATGTGGTCGTTGTGGCAGGATTGGGCATAATAAGAAGACTTGCAGATTTGCACCAACTCAGTAG
Protein sequenceShow/hide protein sequence
MLHDGHWNDSENYMDFELSIFIRDQIAMGRSMQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPL
GNESSWHIPDDIKKYISSPPNVKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAPTQ