; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017402 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017402
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr5:3271098..3272651
RNA-Seq ExpressionLag0017402
SyntenyLag0017402
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015386823.1 uncharacterized protein LOC107177480 [Citrus sinensis]2.0e-2434.72Show/hide
Query:  LESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQFLG
        L+ +  + +P F   IM A+ P +F LP    YDG++DP                                    + KL P  I SF +LSR F + F  
Subjt:  LESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQFLG

Query:  ARDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAER
        A+ RRKP   LLT+KQ+  E+L  YI +++NE++QV+GYDDG++L  ++ GL+  KL  S+ +  P +Y+E ++R +KY NAEE  K+   E+
Subjt:  ARDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAER

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]8.1e-2638.05Show/hide
Query:  NLESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQFL
        +LE L+ QAD PF + IM+ +VP KFKLPT  Q+D   DP                                    + +L   SI SFK L+R F TQF+
Subjt:  NLESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQFL

Query:  GARDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQRVT
        G R R +P   LLTIKQ+  ESL  Y+ RF+ E +QVEG  D V+L   +SG++DE L  S G+  P T++E +SRAQ+Y++A E   S   +RE     
Subjt:  GARDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQRVT

Query:  TIDKGRRKEERGKRPREEDEDRGHLK
        T  K  R  ++ +  R E  DR   K
Subjt:  TIDKGRRKEERGKRPREEDEDRGHLK

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]4.7e-2637.61Show/hide
Query:  NLESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQFL
        +LE L+GQAD PF + IM+ +VP KFKLPT   +DG  +P                                    + +L   SI SFK L+R F TQF+
Subjt:  NLESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQFL

Query:  GARDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQRVT
        G R R +P   LLTIKQ+  ESL+ Y+ RF+ E +Q+EG  D V+L   +SG++DE L  S  +  P T++E +SRAQ+Y++A E   S   +RE     
Subjt:  GARDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQRVT

Query:  TIDKGRRKEERGKRPREEDEDRGHLK
        T  K  R  ++ +  R E  DRG  K
Subjt:  TIDKGRRKEERGKRPREEDEDRGHLK

XP_024041095.1 uncharacterized protein LOC112098853 [Citrus clementina]5.6e-2735.98Show/hide
Query:  LESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQFLG
        L+ +  + +PPF   IM A+ P +F LP    YDG++DP                                    + +L P SI SF +LSR F + F  
Subjt:  LESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQFLG

Query:  ARDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQRVTT
        AR R KP   LLT+KQ+ GE+L  YI R++NE+ QV+GYDDG+AL+ ++ GL+  KL  S+ +  P +Y+E ++RA+KY NAEE  K+   E+       
Subjt:  ARDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQRVTT

Query:  IDKGRRKEERGKRP
          K  ++E R  RP
Subjt:  IDKGRRKEERGKRP

XP_024047974.1 uncharacterized protein LOC112101548 [Citrus clementina]3.1e-2535.78Show/hide
Query:  ESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQFLGA
        + ++ +++PPF   IM+A  P  F+LP+   YDG+K P                                    +  L P SI SF EL R F   F  A
Subjt:  ESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQFLGA

Query:  RDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQRVTTI
        R R KP   LLT+KQ  GESL  YI R++ E  QV+GYDDGVAL+ ++ GLQ  +L  S+ ++ P TY+E +SRA+KY NAEE  +S +   + +  ++ 
Subjt:  RDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQRVTTI

Query:  DKGRRKEERGKRPREEDE
        +K  +++ R  RP   D+
Subjt:  DKGRRKEERGKRPREEDE

TrEMBL top hitse value%identityAlignment
A0A2N9GJ66 Reverse transcriptase6.9e-2333.33Show/hide
Query:  ENLESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQF
        +NL+ L+   D PF   ++   +P KF++P+   +DG KDP                                    ++K+ P S+ SF +LSRLF   F
Subjt:  ENLESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQF

Query:  LGARDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQRV
        +GA+   +P  +LL IKQK GE+L  Y+TRF+ E + V+G DD V LT  ISGLQ    L S+ +  P T  E +  AQ+++N EE + +        R 
Subjt:  LGARDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQRV

Query:  TTIDKGRRKEERGKRPREEDEDRGHLKYSSGRSQPDQ
         TI K +RK E   RP E  + R   + +  R Q D+
Subjt:  TTIDKGRRKEERGKRPREEDEDRGHLKYSSGRSQPDQ

A0A2N9IF11 Ribonuclease H9.0e-2332.77Show/hide
Query:  TENLESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQ
        T+NL+ L+   D PF   ++   +P KF++P+   +DG KDP                                    ++K+ P S+ SF +LSRLF   
Subjt:  TENLESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQ

Query:  FLGARDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQR
        F+GA+   +P  +LL IKQK GE+L  Y+TRF+ E + V+G DD V LT  ISGLQ    L S+ +  P T  E +  AQ+++N EE + +        R
Subjt:  FLGARDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQR

Query:  VTTIDKGRRKEERGKRPREEDEDRGHLKYSSGRSQPDQ
          T+ K +RK E   RP E  + R   + +  R   D+
Subjt:  VTTIDKGRRKEERGKRPREEDEDRGHLKYSSGRSQPDQ

A0A6J1DWY0 uncharacterized protein LOC1110252933.9e-2638.05Show/hide
Query:  NLESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQFL
        +LE L+ QAD PF + IM+ +VP KFKLPT  Q+D   DP                                    + +L   SI SFK L+R F TQF+
Subjt:  NLESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQFL

Query:  GARDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQRVT
        G R R +P   LLTIKQ+  ESL  Y+ RF+ E +QVEG  D V+L   +SG++DE L  S G+  P T++E +SRAQ+Y++A E   S   +RE     
Subjt:  GARDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQRVT

Query:  TIDKGRRKEERGKRPREEDEDRGHLK
        T  K  R  ++ +  R E  DR   K
Subjt:  TIDKGRRKEERGKRPREEDEDRGHLK

A0A6J1DZ49 uncharacterized protein LOC1110248514.0e-2338.16Show/hide
Query:  MQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTIKQ
        M+ +   KFKLP   +YDG  DP                                    + +L   SI SFKEL+  F TQF+G R + KP   LLTIKQ
Subjt:  MQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTIKQ

Query:  KPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQRVTTIDKGRRKEERGKRPRE
        K  ESL  Y+ RF+ E +QVEG  D VAL   +SG++DE+L+ S G+  P T+ E +SRAQKY++A EL+  +R + E +R     K  R+ E+  R   
Subjt:  KPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQRVTTIDKGRRKEERGKRPRE

Query:  EDEDRGH
        E  D GH
Subjt:  EDEDRGH

A0A6J1E1E7 uncharacterized protein LOC1110255482.3e-2637.61Show/hide
Query:  NLESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQFL
        +LE L+GQAD PF + IM+ +VP KFKLPT   +DG  +P                                    + +L   SI SFK L+R F TQF+
Subjt:  NLESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPC-----------------------------------YEKLPPKSIDSFKELSRLFATQFL

Query:  GARDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQRVT
        G R R +P   LLTIKQ+  ESL+ Y+ RF+ E +Q+EG  D V+L   +SG++DE L  S  +  P T++E +SRAQ+Y++A E   S   +RE     
Subjt:  GARDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQRVT

Query:  TIDKGRRKEERGKRPREEDEDRGHLK
        T  K  R  ++ +  R E  DRG  K
Subjt:  TIDKGRRKEERGKRPREEDEDRGHLK

SwissProt top hitse value%identityAlignment
A0KTZ6 Translation initiation factor IF-21.4e-0451.61Show/hide
Query:  IKAEVEARALAEVKAREKIELETKIRAELEVKLRAEAEAAAKAKVEVEAEAKARANIQVNAQ
        +KAE EA+A AE +A+ K E E K RAE E K +A+AEA A+AK + +AEAKA+A    +A+
Subjt:  IKAEVEARALAEVKAREKIELETKIRAELEVKLRAEAEAAAKAKVEVEAEAKARANIQVNAQ

A1S462 Translation initiation factor IF-21.8e-0448.72Show/hide
Query:  GLHKRIKAEVEARALAEVKAREKIELETKIRAELEVKLRAEAEAAAKAKVEVEAEAKARANIQVNAQPMDVDTENLES
        G    +KAE EARA AE +A  K E E K +AE E K +A+AEA AKAK E EA+AKA A+     QP  V++E  ++
Subjt:  GLHKRIKAEVEARALAEVKAREKIELETKIRAELEVKLRAEAEAAAKAKVEVEAEAKARANIQVNAQPMDVDTENLES

Q0HLG1 Translation initiation factor IF-27.4e-0645.24Show/hide
Query:  IKAEVEARALAEVKAREKIELETKIRAELEVKLRAEAEAAAKAKVEVEAEAKARANIQV------NAQPMDVDTENLESLIGQA
        +KAE EA+A AE +A+ K E E K +AE EVK +AEAEA AKA+ E +A+AKA A ++V       A+   V+ E L+++  +A
Subjt:  IKAEVEARALAEVKAREKIELETKIRAELEVKLRAEAEAAAKAKVEVEAEAKARANIQV------NAQPMDVDTENLESLIGQA

Q0HXR5 Translation initiation factor IF-27.4e-0645.24Show/hide
Query:  IKAEVEARALAEVKAREKIELETKIRAELEVKLRAEAEAAAKAKVEVEAEAKARANIQV------NAQPMDVDTENLESLIGQA
        +KAE EA+A AE +A+ K E E K +AE EVK +AEAEA AKA+ E +A+AKA A ++V       A+   V+ E L+++  +A
Subjt:  IKAEVEARALAEVKAREKIELETKIRAELEVKLRAEAEAAAKAKVEVEAEAKARANIQV------NAQPMDVDTENLESLIGQA

Q8EHL5 Translation initiation factor IF-22.4e-0443.04Show/hide
Query:  IKAEVEARALAEVKAREKIELETKIRAELEVKLRAEAEAAAKAKVEVEAEAKARANIQV------NAQPMDVDTENLES
        +KAE EA+A AE +A+ K E E K +AE E K + EAEA AKA+ E +A+AKA A ++V       A+   ++ E L++
Subjt:  IKAEVEARALAEVKAREKIELETKIRAELEVKLRAEAEAAAKAKVEVEAEAKARANIQV------NAQPMDVDTENLES

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCAAAACCTGGGGGTGACTGCAAAACATTCTTCGTATTTGAATATGAGAAGTTCTCGTGATTGTGCAGACTGGGGTGGTAGAAGTTTGGTTTTCGACGAGGAAGA
TGAGGAAACACACAGTGCAACCAGCAAGTTGCGCAAACCGAAATGTGGCAAAGAACTTGACCTAAAGGAGCCAGGGCCGAGCAAAAGGGTAGAGCGCAAGAGCGCGCTTG
ACGTCCCAAATGAGACCAGTATAGTGGGTTTGCACAAGAGAATCAAAGCCGAGGTCGAGGCCAGGGCTTTAGCCGAGGTCAAGGCGCGGGAGAAGATTGAGCTCGAAACA
AAGATCCGAGCCGAGCTCGAGGTTAAGCTGAGAGCCGAAGCCGAAGCCGCTGCCAAAGCTAAGGTAGAGGTCGAGGCCGAGGCTAAGGCTAGGGCTAATATTCAGGTAAA
TGCGCAACCCATGGATGTAGATACAGAAAACTTAGAAAGCCTAATAGGGCAGGCCGACCCACCCTTTGTCGATGGGATTATGCAAGCAGAAGTTCCGCATAAGTTTAAAT
TACCGACTTTTCCACAGTATGATGGGAGGAAAGACCCGTGTTACGAAAAGTTGCCACCTAAGTCCATTGATTCATTCAAAGAGTTGTCACGCCTTTTTGCCACACAATTT
TTGGGTGCAAGGGACCGAAGAAAGCCGCAGTTCAACTTGTTGACTATCAAACAGAAGCCGGGGGAGAGCTTGAATGGGTACATCACACGTTTCAGCAATGAAGTTGTGCA
GGTAGAGGGATATGATGATGGAGTAGCACTAACAACAGTTATTTCAGGGTTACAGGATGAAAAACTGCTGAATTCCATAGGGGAGCATCAACCGCGAACGTATGCTGAGT
TCATCTCTAGAGCGCAAAAGTATATAAATGCGGAGGAACTGATGAAATCCAACCGGGCGGAAAGGGAAGCGCAGAGGGTAACCACCATCGACAAGGGCAGAAGAAAAGAG
GAGAGGGGCAAGAGGCCGCGGGAAGAGGACGAAGACCGGGGCCACCTTAAATATTCCTCTGGTCGGAGCCAGCCTGACCAGAGGGAAGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGCAAAACCTGGGGGTGACTGCAAAACATTCTTCGTATTTGAATATGAGAAGTTCTCGTGATTGTGCAGACTGGGGTGGTAGAAGTTTGGTTTTCGACGAGGAAGA
TGAGGAAACACACAGTGCAACCAGCAAGTTGCGCAAACCGAAATGTGGCAAAGAACTTGACCTAAAGGAGCCAGGGCCGAGCAAAAGGGTAGAGCGCAAGAGCGCGCTTG
ACGTCCCAAATGAGACCAGTATAGTGGGTTTGCACAAGAGAATCAAAGCCGAGGTCGAGGCCAGGGCTTTAGCCGAGGTCAAGGCGCGGGAGAAGATTGAGCTCGAAACA
AAGATCCGAGCCGAGCTCGAGGTTAAGCTGAGAGCCGAAGCCGAAGCCGCTGCCAAAGCTAAGGTAGAGGTCGAGGCCGAGGCTAAGGCTAGGGCTAATATTCAGGTAAA
TGCGCAACCCATGGATGTAGATACAGAAAACTTAGAAAGCCTAATAGGGCAGGCCGACCCACCCTTTGTCGATGGGATTATGCAAGCAGAAGTTCCGCATAAGTTTAAAT
TACCGACTTTTCCACAGTATGATGGGAGGAAAGACCCGTGTTACGAAAAGTTGCCACCTAAGTCCATTGATTCATTCAAAGAGTTGTCACGCCTTTTTGCCACACAATTT
TTGGGTGCAAGGGACCGAAGAAAGCCGCAGTTCAACTTGTTGACTATCAAACAGAAGCCGGGGGAGAGCTTGAATGGGTACATCACACGTTTCAGCAATGAAGTTGTGCA
GGTAGAGGGATATGATGATGGAGTAGCACTAACAACAGTTATTTCAGGGTTACAGGATGAAAAACTGCTGAATTCCATAGGGGAGCATCAACCGCGAACGTATGCTGAGT
TCATCTCTAGAGCGCAAAAGTATATAAATGCGGAGGAACTGATGAAATCCAACCGGGCGGAAAGGGAAGCGCAGAGGGTAACCACCATCGACAAGGGCAGAAGAAAAGAG
GAGAGGGGCAAGAGGCCGCGGGAAGAGGACGAAGACCGGGGCCACCTTAAATATTCCTCTGGTCGGAGCCAGCCTGACCAGAGGGAAGGCTGA
Protein sequenceShow/hide protein sequence
MMQNLGVTAKHSSYLNMRSSRDCADWGGRSLVFDEEDEETHSATSKLRKPKCGKELDLKEPGPSKRVERKSALDVPNETSIVGLHKRIKAEVEARALAEVKAREKIELET
KIRAELEVKLRAEAEAAAKAKVEVEAEAKARANIQVNAQPMDVDTENLESLIGQADPPFVDGIMQAEVPHKFKLPTFPQYDGRKDPCYEKLPPKSIDSFKELSRLFATQF
LGARDRRKPQFNLLTIKQKPGESLNGYITRFSNEVVQVEGYDDGVALTTVISGLQDEKLLNSIGEHQPRTYAEFISRAQKYINAEELMKSNRAEREAQRVTTIDKGRRKE
ERGKRPREEDEDRGHLKYSSGRSQPDQREG