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Lag0017426 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017426
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationchr5:3567937..3569669
RNA-Seq ExpressionLag0017426
SyntenyLag0017426
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN68464.1 hypothetical protein VITISV_016830 [Vitis vinifera]7.7e-1127.54Show/hide
Query:  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLGALNW----------
        +++K     +T+ +  ++    E  L DPP+ N+ F+ + M E     R+DR + S +W   F +     L R TS+H+P  L      W          
Subjt:  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLGALNW----------

Query:  ------------EAEIEEEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI
                       I EE + ++  LY S  G  +  + +DW PI  + ++ L+ PF+KEEI KAI
Subjt:  ------------EAEIEEEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI

RVW27524.1 putative ribonuclease H protein [Vitis vinifera]5.4e-1231.08Show/hide
Query:  EDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLGALNW-------------------------EAEIEEE
        E+ L+DPP+ ++ F+ + M E     R+DR L S +W + F +     L R TS+H+P  L      W                            I+EE
Subjt:  EDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLGALNW-------------------------EAEIEEE

Query:  IVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI
        I+ ++  LY S +G  +  + +DW PI S+ ++ LE PF++EEI KAI
Subjt:  IVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI

RVW55743.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]2.3e-1034.43Show/hide
Query:  DPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSL----GALNWEAEIEEEIVDFYRMLYDSDNGPRFTFDRIDWVP
        D P+ ++ F+ + M       R+DR L S +W + F +     L R TS+H+P  L L    G       I+EEI+ ++  LY S +G  +  + +DW P
Subjt:  DPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSL----GALNWEAEIEEEIVDFYRMLYDSDNGPRFTFDRIDWVP

Query:  IDSQESANLEKPFSKEEIIKAI
        I  + +  LE PF++EEI KAI
Subjt:  IDSQESANLEKPFSKEEIIKAI

RVX08242.1 hypothetical protein CK203_017636 [Vitis vinifera]3.5e-1127.65Show/hide
Query:  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLGALNWEA--------
        +++K     +T+ +  ++    E  LLDPP+ N+ F+ + + E     R+DR L S +W + F +     L R TSNH+P +L      W +        
Subjt:  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLGALNWEA--------

Query:  -----------------EIEEEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI
                          I E+I+ ++  LY S  G  ++ + +DW PI  + +  L+ PF +EEI KAI
Subjt:  -----------------EIEEEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI

XP_034710512.1 uncharacterized protein LOC117933236 [Vitis riparia]1.1e-0925.88Show/hide
Query:  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLGALNW----------
        +++K     +T  +  ++    +  L+D P+ ++ ++ + M E     R+DR L S +W + F +     L R TS+H+P  L      W          
Subjt:  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLGALNW----------

Query:  ---------------EAEIEEEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI
                          I+EEI+ ++  LY S +G  +  + +DW PI  + ++ LE PF++EEI KAI
Subjt:  ---------------EAEIEEEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI

TrEMBL top hitse value%identityAlignment
A0A438CWE0 Putative ribonuclease H protein2.6e-1231.08Show/hide
Query:  EDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLGALNW-------------------------EAEIEEE
        E+ L+DPP+ ++ F+ + M E     R+DR L S +W + F +     L R TS+H+P  L      W                            I+EE
Subjt:  EDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLGALNW-------------------------EAEIEEE

Query:  IVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI
        I+ ++  LY S +G  +  + +DW PI S+ ++ LE PF++EEI KAI
Subjt:  IVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI

A0A438F705 Transposon TX1 uncharacterized 149 kDa protein1.1e-1034.43Show/hide
Query:  DPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSL----GALNWEAEIEEEIVDFYRMLYDSDNGPRFTFDRIDWVP
        D P+ ++ F+ + M       R+DR L S +W + F +     L R TS+H+P  L L    G       I+EEI+ ++  LY S +G  +  + +DW P
Subjt:  DPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSL----GALNWEAEIEEEIVDFYRMLYDSDNGPRFTFDRIDWVP

Query:  IDSQESANLEKPFSKEEIIKAI
        I  + +  LE PF++EEI KAI
Subjt:  IDSQESANLEKPFSKEEIIKAI

A0A438IT31 Uncharacterized protein1.2e-0926.55Show/hide
Query:  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLG--------------
        +++K     +T  +  ++    E  L+D P+ ++ F+ + M E +   R+DR L S +W + F +     L R TS+H+P  L                 
Subjt:  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLG--------------

Query:  -----------ALNWEAEIEEEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAIQGLSNLR
                    LN    I+EEI+ ++  LY S +G  +  + +DW  I  + ++ L+ PF++EEI KAI  L N +
Subjt:  -----------ALNWEAEIEEEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAIQGLSNLR

A0A438JH21 Uncharacterized protein1.7e-1127.65Show/hide
Query:  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLGALNWEA--------
        +++K     +T+ +  ++    E  LLDPP+ N+ F+ + + E     R+DR L S +W + F +     L R TSNH+P +L      W +        
Subjt:  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLGALNWEA--------

Query:  -----------------EIEEEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI
                          I E+I+ ++  LY S  G  ++ + +DW PI  + +  L+ PF +EEI KAI
Subjt:  -----------------EIEEEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI

A5BZ13 Reverse transcriptase domain-containing protein3.8e-1127.54Show/hide
Query:  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLGALNW----------
        +++K     +T+ +  ++    E  L DPP+ N+ F+ + M E     R+DR + S +W   F +     L R TS+H+P  L      W          
Subjt:  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLGALNW----------

Query:  ------------EAEIEEEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI
                       I EE + ++  LY S  G  +  + +DW PI  + ++ L+ PF+KEEI KAI
Subjt:  ------------EAEIEEEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCCACTACATCCAAATTTGAATACTAAGGGCCATATTGGACAGACCCCGAAGGCACCAACAATAATTCCCTTGGGAGCGGGCTTGAAAGGAAAATGCAAGGATGT
TGTTCTAAATGGATTTGTGAATAGCAGAGAAATAGTTCTTATAATCAAAAAGAATAATATGTGCATTAGACCAATTTCTGGAAATTCGATGAAGAAAGGTTGTACAGCCA
AGAAGAGACGCAATAGAGAGGTCACCAATCTCCTTGGAACATGGGAAAAAGAGGCCAATGAAGACAACTTGTTAGATCCTCCCATGGCCAACAGTAGATTCTCTCGAACT
AGAATGGGGGAGAGAGTGACTACCTCAAGGATTGATAGAGTCCTAATATCTAGGCAATGGGCTGAAAACTTCAAAGAACACAGGTTGTATAGGTTGCATCGACCCACCTC
TAACCATTTCCCCAAAGCTCTTTCTTTAGGAGCTTTGAACTGGGAAGCAGAGATAGAGGAAGAGATTGTTGACTTCTATAGGATGCTCTATGATAGTGACAATGGTCCTC
GGTTTACTTTTGACAGAATTGATTGGGTCCCTATTGACTCTCAAGAAAGTGCAAATTTGGAGAAGCCTTTTAGCAAGGAGGAGATAATCAAAGCGATTCAAGGCCTTAGC
AATCTCAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGATTCCACTACATCCAAATTTGAATACTAAGGGCCATATTGGACAGACCCCGAAGGCACCAACAATAATTCCCTTGGGAGCGGGCTTGAAAGGAAAATGCAAGGATGT
TGTTCTAAATGGATTTGTGAATAGCAGAGAAATAGTTCTTATAATCAAAAAGAATAATATGTGCATTAGACCAATTTCTGGAAATTCGATGAAGAAAGGTTGTACAGCCA
AGAAGAGACGCAATAGAGAGGTCACCAATCTCCTTGGAACATGGGAAAAAGAGGCCAATGAAGACAACTTGTTAGATCCTCCCATGGCCAACAGTAGATTCTCTCGAACT
AGAATGGGGGAGAGAGTGACTACCTCAAGGATTGATAGAGTCCTAATATCTAGGCAATGGGCTGAAAACTTCAAAGAACACAGGTTGTATAGGTTGCATCGACCCACCTC
TAACCATTTCCCCAAAGCTCTTTCTTTAGGAGCTTTGAACTGGGAAGCAGAGATAGAGGAAGAGATTGTTGACTTCTATAGGATGCTCTATGATAGTGACAATGGTCCTC
GGTTTACTTTTGACAGAATTGATTGGGTCCCTATTGACTCTCAAGAAAGTGCAAATTTGGAGAAGCCTTTTAGCAAGGAGGAGATAATCAAAGCGATTCAAGGCCTTAGC
AATCTCAGATGA
Protein sequenceShow/hide protein sequence
MIPLHPNLNTKGHIGQTPKAPTIIPLGAGLKGKCKDVVLNGFVNSREIVLIIKKNNMCIRPISGNSMKKGCTAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRT
RMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLGALNWEAEIEEEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAIQGLS
NLR