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Lag0017427 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017427
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 reverse transcriptase-like
Genome locationchr5:3570973..3571602
RNA-Seq ExpressionLag0017427
SyntenyLag0017427
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0050896 - response to stimulus (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5579293.1 hypothetical protein H5410_049920 [Solanum commersonii]8.3e-2335.23Show/hide
Query:  ITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLYMEFLHLARKPRSCGGKSLLAYIWS
        + + ++K+ R F+W G     G SLV WE   LS   GGLG+ +L  +N SLL KWLW++T++ ++LW++VI + Y E       P            W 
Subjt:  ITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLYMEFLHLARKPRSCGGKSLLAYIWS

Query:  FFIWLENQGVKK-RECNRLWIDIATNNYQVPNYLQKEHRFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHDNQAWNLGIRRRLFDREL
             E  GV   R    LW  + TN Y +      + +FW+DVW ++ PL+D FPDL+ I       V D W    Q W+L  RR L D E+
Subjt:  FFIWLENQGVKK-RECNRLWIDIATNNYQVPNYLQKEHRFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHDNQAWNLGIRRRLFDREL

RVW45036.1 putative ribonuclease H protein [Vitis vinifera]1.7e-2031.47Show/hide
Query:  ITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLYMEFLHLARKPRSCG--GKSLLAYI
        + + ++K+ RDF+W GG  +    L+KWE      S GGLG+  LV  N +LL KW+W+F      LW++VI + Y +  H  R  ++ G  G  +   I
Subjt:  ITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLYMEFLHLARKPRSCG--GKSLLAYI

Query:  WSFFIWL-ENQGVKKRECNRLWIDIATNNYQVPNYLQKEHRFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHD--NQAWNLGIRRRLFDREL
        W    W  +N G    + N++                    FW DVWCE   L  SFP LY +++ +   V + W+ +     WNL   R   D EL
Subjt:  WSFFIWL-ENQGVKKRECNRLWIDIATNNYQVPNYLQKEHRFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHD--NQAWNLGIRRRLFDREL

RVW50579.1 putative ribonuclease H protein [Vitis vinifera]1.7e-2031.98Show/hide
Query:  ITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLYMEFLHLARKPRSCG--GKSLLAYI
        + + ++K+ RDF+W GG  +    L+KWE      S GGLG+  LV  N +LL KW+W+F      LW++VI   Y +  H  R  ++ G  G  +   I
Subjt:  ITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLYMEFLHLARKPRSCG--GKSLLAYI

Query:  WSFFIWL-ENQGVKKRECNRLWIDIATNNYQVPNYLQKEHRFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHD--NQAWNLGIRRRLFDREL
        W    W  +N G    + N++                    FW DVWCE   L  SFP LY ++  +   V + WD +     WNL   R   D EL
Subjt:  WSFFIWL-ENQGVKKRECNRLWIDIATNNYQVPNYLQKEHRFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHD--NQAWNLGIRRRLFDREL

RVW94029.1 LINE-1 reverse transcriptase-like [Vitis vinifera]4.5e-2131.82Show/hide
Query:  VITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLY--MEFLHLARKPRSCGGKSLLAY
        ++ + +EK+ +DF+W G   +    LVKWE   +    GGLG+  LV  N +LL KW+W+F +    LW+KV+ + Y   EF    RK     G  +   
Subjt:  VITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLY--MEFLHLARKPRSCGGKSLLAY

Query:  IWSFFIWL-ENQGVKKRECNRLWIDIATNNYQVPNYLQKEHRFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHD--NQAWNLGIRRRLFDREL
        I     W  EN   K  + N++                   RFW D WC    L   FPDL+ ++ ++   V D WDH+     WNL + R   D EL
Subjt:  IWSFFIWL-ENQGVKKRECNRLWIDIATNNYQVPNYLQKEHRFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHD--NQAWNLGIRRRLFDREL

XP_022158566.1 uncharacterized protein LOC111025019 [Momordica charantia]1.6e-2636.41Show/hide
Query:  ITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLYMEFLHLARKPRSCGGKSLLAYIWS
        ITK + KI+RD  WSG       +LVKW+ ++L    GGLG+ +   +NN+LL KWLW FT++ ++LWR+VIAS+Y                 +  Y W 
Subjt:  ITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLYMEFLHLARKPRSCGGKSLLAYIWS

Query:  FFIWLENQGVKKRECNRLWIDIATN--NYQVPNYLQKEH----RFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHDNQAWNLGIRRRLFD
               +  K +   R W DIA N   +Q     +        FW D W    PL D FPD++ +S K+   V D W+ +NQ W+L +RR LFD
Subjt:  FFIWLENQGVKKRECNRLWIDIATN--NYQVPNYLQKEH----RFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHDNQAWNLGIRRRLFD

TrEMBL top hitse value%identityAlignment
A0A0V0IIW1 Putative ovule protein7.5e-2234.72Show/hide
Query:  ITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLYMEFLHLARKPRSCGGKSLLAYIWS
        I K I ++ R FIW G   K G +LVKWE   LS   GGLG+ +L  +NN LL KWLW+F  +  +LWR+ IA  Y  F     +         +   + 
Subjt:  ITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLYMEFLHLARKPRSCGGKSLLAYIWS

Query:  FFIWLENQGVKKRECNRLWIDIATNNY-QVPNYLQKEHRFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHDNQAWNLGIRRRLFDREL
          +W        +   RLW     N Y  V N L+ +  FW ++W   + L++ FP+LY +S ++   V   W    Q WNL  RR L D E+
Subjt:  FFIWLENQGVKKRECNRLWIDIATNNY-QVPNYLQKEHRFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHDNQAWNLGIRRRLFDREL

A0A438EB18 Putative ribonuclease H protein8.3e-2131.47Show/hide
Query:  ITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLYMEFLHLARKPRSCG--GKSLLAYI
        + + ++K+ RDF+W GG  +    L+KWE      S GGLG+  LV  N +LL KW+W+F      LW++VI + Y +  H  R  ++ G  G  +   I
Subjt:  ITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLYMEFLHLARKPRSCG--GKSLLAYI

Query:  WSFFIWL-ENQGVKKRECNRLWIDIATNNYQVPNYLQKEHRFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHD--NQAWNLGIRRRLFDREL
        W    W  +N G    + N++                    FW DVWCE   L  SFP LY +++ +   V + W+ +     WNL   R   D EL
Subjt:  WSFFIWL-ENQGVKKRECNRLWIDIATNNYQVPNYLQKEHRFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHD--NQAWNLGIRRRLFDREL

A0A438IBH7 LINE-1 reverse transcriptase-like2.2e-2131.82Show/hide
Query:  VITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLY--MEFLHLARKPRSCGGKSLLAY
        ++ + +EK+ +DF+W G   +    LVKWE   +    GGLG+  LV  N +LL KW+W+F +    LW+KV+ + Y   EF    RK     G  +   
Subjt:  VITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLY--MEFLHLARKPRSCGGKSLLAY

Query:  IWSFFIWL-ENQGVKKRECNRLWIDIATNNYQVPNYLQKEHRFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHD--NQAWNLGIRRRLFDREL
        I     W  EN   K  + N++                   RFW D WC    L   FPDL+ ++ ++   V D WDH+     WNL + R   D EL
Subjt:  IWSFFIWL-ENQGVKKRECNRLWIDIATNNYQVPNYLQKEHRFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHD--NQAWNLGIRRRLFDREL

A0A6J1E196 uncharacterized protein LOC1110250197.8e-2736.41Show/hide
Query:  ITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLYMEFLHLARKPRSCGGKSLLAYIWS
        ITK + KI+RD  WSG       +LVKW+ ++L    GGLG+ +   +NN+LL KWLW FT++ ++LWR+VIAS+Y                 +  Y W 
Subjt:  ITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLYMEFLHLARKPRSCGGKSLLAYIWS

Query:  FFIWLENQGVKKRECNRLWIDIATN--NYQVPNYLQKEH----RFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHDNQAWNLGIRRRLFD
               +  K +   R W DIA N   +Q     +        FW D W    PL D FPD++ +S K+   V D W+ +NQ W+L +RR LFD
Subjt:  FFIWLENQGVKKRECNRLWIDIATN--NYQVPNYLQKEH----RFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHDNQAWNLGIRRRLFD

A0A803P465 Uncharacterized protein2.2e-2133.33Show/hide
Query:  ITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLYMEFLHLARKPRSCGGKSLLAYIWS
        +TK +EK++RDF+W G     G  LV W+        GGLG+  L  RN SLL KWLW+F  + +SLW +V+ S Y    +L                  
Subjt:  ITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLYMEFLHLARKPRSCGGKSLLAYIWS

Query:  FFIWLENQGVKKRECNRLWIDIATNNYQVPNYLQKEH---------RFWEDVWCEREPLKDSFPDLYVISNKKGVPVHD---------GWDHDNQAWNLG
           W   +G  +      W DI+        +L   H         RFWEDVW +  PL  +FPDL VIS  +  P+ +         GW    ++WN  
Subjt:  FFIWLENQGVKKRECNRLWIDIATNNYQVPNYLQKEH---------RFWEDVWCEREPLKDSFPDLYVISNKKGVPVHD---------GWDHDNQAWNLG

Query:  IRRRLFDREL
         RR L DREL
Subjt:  IRRRLFDREL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATCACCAAATTGATCGAGAAGATTATTAGAGACTTTATTTGGAGTGGAGGCTTCTACAAACCAGGATGCAGCCTTGTGAAATGGGAATGGACAGCCCTATCTAC
CAGCCACGGAGGTCTTGGGGTAAGTTCCTTGGTACACCGAAATAACTCCTTGTTAACCAAGTGGTTATGGCAATTTACTCAAAAAGGATCTTCTTTGTGGAGGAAAGTCA
TTGCTAGCTTATATATGGAGTTTCTTCATTTGGCTAGAAAACCAAGGAGTTGTGGAGGAAAGTCATTGCTAGCATATATATGGAGTTTCTTCATTTGGCTAGAAAACCAA
GGAGTTAAAAAGAGGGAGTGCAACAGACTGTGGATAGATATTGCTACCAACAATTACCAAGTTCCAAACTATTTGCAGAAAGAACATAGATTTTGGGAGGATGTTTGGTG
TGAAAGGGAACCTCTAAAAGATAGCTTCCCCGATTTGTACGTGATTTCGAATAAAAAAGGTGTTCCTGTTCACGATGGTTGGGATCATGATAATCAAGCTTGGAATCTAG
GCATTCGAAGAAGATTATTTGACAGAGAGTTAAGTACTTTTTTTTTTAAAAGGAAACCATACTTTTCATTGAAAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGATCACCAAATTGATCGAGAAGATTATTAGAGACTTTATTTGGAGTGGAGGCTTCTACAAACCAGGATGCAGCCTTGTGAAATGGGAATGGACAGCCCTATCTAC
CAGCCACGGAGGTCTTGGGGTAAGTTCCTTGGTACACCGAAATAACTCCTTGTTAACCAAGTGGTTATGGCAATTTACTCAAAAAGGATCTTCTTTGTGGAGGAAAGTCA
TTGCTAGCTTATATATGGAGTTTCTTCATTTGGCTAGAAAACCAAGGAGTTGTGGAGGAAAGTCATTGCTAGCATATATATGGAGTTTCTTCATTTGGCTAGAAAACCAA
GGAGTTAAAAAGAGGGAGTGCAACAGACTGTGGATAGATATTGCTACCAACAATTACCAAGTTCCAAACTATTTGCAGAAAGAACATAGATTTTGGGAGGATGTTTGGTG
TGAAAGGGAACCTCTAAAAGATAGCTTCCCCGATTTGTACGTGATTTCGAATAAAAAAGGTGTTCCTGTTCACGATGGTTGGGATCATGATAATCAAGCTTGGAATCTAG
GCATTCGAAGAAGATTATTTGACAGAGAGTTAAGTACTTTTTTTTTTAAAAGGAAACCATACTTTTCATTGAAAAAATGA
Protein sequenceShow/hide protein sequence
MVITKLIEKIIRDFIWSGGFYKPGCSLVKWEWTALSTSHGGLGVSSLVHRNNSLLTKWLWQFTQKGSSLWRKVIASLYMEFLHLARKPRSCGGKSLLAYIWSFFIWLENQ
GVKKRECNRLWIDIATNNYQVPNYLQKEHRFWEDVWCEREPLKDSFPDLYVISNKKGVPVHDGWDHDNQAWNLGIRRRLFDRELSTFFFKRKPYFSLKK