; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017435 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017435
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr5:3656543..3656950
RNA-Seq ExpressionLag0017435
SyntenyLag0017435
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]1.5e-0937.5Show/hide
Query:  SWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLNNEDVDQTEISFL
        S KLN  AS  E   +GGV W++ DS GS+IC   + +  KW VKMLE +A++EGL+ +  +R   S    P I      + +  +LNN  +D  E+S +
Subjt:  SWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLNNEDVDQTEISFL

Query:  VGEIERMKSECEAISFSHCP
        V EI  ++     ISF   P
Subjt:  VGEIERMKSECEAISFSHCP

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]2.2e-0837.86Show/hide
Query:  RWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLNNEDV
        RW+  P++ WKLN DAS  E    GG+GWI+ D  G  + +G  +I  K  +  LE+  I+ GL+ F  ++      S   I + SD++ VI L+  EDV
Subjt:  RWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLNNEDV

Query:  DQT
        D T
Subjt:  DQT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.9e-1239.37Show/hide
Query:  ARWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLNNED
        A+W    S+SWKLN +A+     N GG+GWI+RD  G  I +  R I  + ++  LE+ AI EG      LRA R +   P I + SD++  I+LL+ + 
Subjt:  ARWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLNNED

Query:  VDQTEISFLVGEIERMKSECEAISFSH
         DQTEI +L+ EI +M  + E +S  H
Subjt:  VDQTEISFLVGEIERMKSECEAISFSH

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.2e-1136Show/hide
Query:  RWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLNNEDV
        +W   P   W LN DAS  +S +RGG+GWI+R   G  + +G R +    +VK+LE  AILEGLR    L   R       + + +D+  V +LLN +  
Subjt:  RWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLNNEDV

Query:  DQTEISFLVGEIERMKSECEAISFS
        D T+  ++V EI  ++  CE ++F+
Subjt:  DQTEISFLVGEIERMKSECEAISFS

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.1e-1238.28Show/hide
Query:  ARWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRA-PRSDLSIPSIVVVSDTIGVINLLNNE
        ARW    S+SWKLN DA+     N GG+GWI+RD  G  I +  R I  + ++  LE+ AI EGLR        P        I + SD++  I+LL+ +
Subjt:  ARWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRA-PRSDLSIPSIVVVSDTIGVINLLNNE

Query:  DVDQTEISFLVGEIERMKSECEAISFSH
          DQTEI +L+ EI +M  + + +S  H
Subjt:  DVDQTEISFLVGEIERMKSECEAISFSH

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134129.2e-1339.37Show/hide
Query:  ARWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLNNED
        A+W    S+SWKLN +A+     N GG+GWI+RD  G  I +  R I  + ++  LE+ AI EG      LRA R +   P I + SD++  I+LL+ + 
Subjt:  ARWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLNNED

Query:  VDQTEISFLVGEIERMKSECEAISFSH
         DQTEI +L+ EI +M  + E +S  H
Subjt:  VDQTEISFLVGEIERMKSECEAISFSH

A0A6J1CQG0 uncharacterized protein LOC1110132161.1e-0837.86Show/hide
Query:  RWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLNNEDV
        RW+  P++ WKLN DAS  E    GG+GWI+ D  G  + +G  +I  K  +  LE+  I+ GL+ F  ++      S   I + SD++ VI L+  EDV
Subjt:  RWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLNNEDV

Query:  DQT
        D T
Subjt:  DQT

A0A6J1DNV9 uncharacterized protein LOC1110224036.0e-1236Show/hide
Query:  RWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLNNEDV
        +W   P   W LN DAS  +S +RGG+GWI+R   G  + +G R +    +VK+LE  AILEGLR    L   R       + + +D+  V +LLN +  
Subjt:  RWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLNNEDV

Query:  DQTEISFLVGEIERMKSECEAISFS
        D T+  ++V EI  ++  CE ++F+
Subjt:  DQTEISFLVGEIERMKSECEAISFS

A0A6J1DSV1 uncharacterized protein LOC1110236085.4e-1338.28Show/hide
Query:  ARWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRA-PRSDLSIPSIVVVSDTIGVINLLNNE
        ARW    S+SWKLN DA+     N GG+GWI+RD  G  I +  R I  + ++  LE+ AI EGLR        P        I + SD++  I+LL+ +
Subjt:  ARWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRA-PRSDLSIPSIVVVSDTIGVINLLNNE

Query:  DVDQTEISFLVGEIERMKSECEAISFSH
          DQTEI +L+ EI +M  + + +S  H
Subjt:  DVDQTEISFLVGEIERMKSECEAISFSH

B8AFN2 RNase H domain-containing protein3.1e-0834.45Show/hide
Query:  PAARWTLSPSSSW-KLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLN
        P   W + P   W KLNVD S D +L +GG+G ++RDSSG+TI +  + +N        E+RA +EGL             ++  I+V +D + V+ LLN
Subjt:  PAARWTLSPSSSW-KLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLN

Query:  NEDVDQTEISFLVGEIERM
        + + D++E++ +V E +R+
Subjt:  NEDVDQTEISFLVGEIERM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein5.9e-0425.81Show/hide
Query:  PSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLNNE
        PS   K N DASH E     G+GW++R+S G+ +  G+ +  G+ + +  E  A++  ++         S      ++   D   V  L+N +
Subjt:  PSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLNNE

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.3e-0628.57Show/hide
Query:  RKPAARWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLL
        R  + +W   P    K N DA+      R G+GWI+R+ SG  +  G R +    +V    + A LE LR +  L   R   +   I+  SD   ++NLL
Subjt:  RKPAARWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLL

Query:  NNEDVDQTEISFLVGEIERMKSECEAISFSHCP
        N++D   T +   + +I+++    E + F   P
Subjt:  NNEDVDQTEISFLVGEIERMKSECEAISFSHCP

AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.0e-0525.23Show/hide
Query:  FRKPAARWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINL
        ++KP A W        K N D S+       G+ WI+R+S G+ +  G  +  G+ ++K  E  A++  ++C         DL    +    D I V  L
Subjt:  FRKPAARWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINL

Query:  LNNEDVD
        + N++ +
Subjt:  LNNEDVD

AT4G29090.1 Ribonuclease H-like superfamily protein3.1e-0525.56Show/hide
Query:  RKPAARWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLL
        R    RW   P    K N DA+ +    R G+GW++R+  G     G R +    SV    + A LE +R +  L   R   +   ++  SD+  +I +L
Subjt:  RKPAARWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLL

Query:  NNEDVDQTEISFLVGEIERMKSECEAISFSHCP
        NN+++    +   + +++R+ S+   + F   P
Subjt:  NNEDVDQTEISFLVGEIERMKSECEAISFSHCP

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.0e-0431.15Show/hide
Query:  RWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAIL
        +W+       K N DASH E     G+GWI+R+S G+ I  G+ +  G+ + +  E   ++
Subjt:  RWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCGAAAACCTGCCGCTCGGTGGACTCTGTCGCCATCGAGCTCGTGGAAGCTTAATGTTGATGCTTCTCACGATGAATCCCTAAACAGAGGAGGGGTTGGTTGGAT
CATGCGTGATTCTTCAGGTTCTACAATCTGTTCGGGGCTAAGAAGAATTAATGGCAAATGGTCAGTTAAAATGCTAGAAATGAGAGCTATTTTAGAAGGCTTGAGGTGTT
TCCCAACACTAAGAGCACCTCGTTCAGACCTCTCAATTCCGTCCATCGTAGTTGTTTCTGACACCATTGGCGTAATAAATCTGCTAAACAACGAAGACGTAGATCAAACA
GAGATTTCCTTTTTGGTTGGAGAAATTGAGCGCATGAAATCTGAGTGCGAAGCGATCTCTTTCTCCCATTGTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCGAAAACCTGCCGCTCGGTGGACTCTGTCGCCATCGAGCTCGTGGAAGCTTAATGTTGATGCTTCTCACGATGAATCCCTAAACAGAGGAGGGGTTGGTTGGAT
CATGCGTGATTCTTCAGGTTCTACAATCTGTTCGGGGCTAAGAAGAATTAATGGCAAATGGTCAGTTAAAATGCTAGAAATGAGAGCTATTTTAGAAGGCTTGAGGTGTT
TCCCAACACTAAGAGCACCTCGTTCAGACCTCTCAATTCCGTCCATCGTAGTTGTTTCTGACACCATTGGCGTAATAAATCTGCTAAACAACGAAGACGTAGATCAAACA
GAGATTTCCTTTTTGGTTGGAGAAATTGAGCGCATGAAATCTGAGTGCGAAGCGATCTCTTTCTCCCATTGTCCTTGA
Protein sequenceShow/hide protein sequence
MFRKPAARWTLSPSSSWKLNVDASHDESLNRGGVGWIMRDSSGSTICSGLRRINGKWSVKMLEMRAILEGLRCFPTLRAPRSDLSIPSIVVVSDTIGVINLLNNEDVDQT
EISFLVGEIERMKSECEAISFSHCP