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Lag0017467 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017467
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr5:4028103..4028771
RNA-Seq ExpressionLag0017467
SyntenyLag0017467
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4273082.1 unnamed protein product [Prunus armeniaca]4.8e-1332.99Show/hide
Query:  MWSMWNFRNKAATENKSPAFNHIRIP-IEESIHEW-----HISYLKRSSPKPARSQSSHAT-WIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLI
        +W +W  RN A  E  +    H+ +    + +HE+     H   L    P+P   Q+   T W K      K+N DA W +    GGVGWVVRDS G ++
Subjt:  MWSMWNFRNKAATENKSPAFNHIRIP-IEESIHEW-----HISYLKRSSPKPARSQSSHAT-WIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLI

Query:  TFGMRRVIRKWDMKSLEVKAIREGLRPIVDTCTQKKMS-LEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVA
          G +  +R     ++E +AIRE L      C Q  +S LE+ESDSL VI+ +  E +    +  I  +I  LV + Q   F +  R  N  AH +A
Subjt:  TFGMRRVIRKWDMKSLEVKAIREGLRPIVDTCTQKKMS-LEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVA

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.5e-1731.88Show/hide
Query:  WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPARS------------QSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSS
        W +W  RNK+  +   P    I++ I+  I    I+   R++    +S             ++ A W    SN WKLN +A W  +   GG+GW++RD  
Subjt:  WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPARS------------QSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSS

Query:  GSLITFGMRRVIRKWDMKSLEVKAIREGLRPIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVA
        G +I    R +  + ++  LEV AI EGLR I     +    + +ESDSL  I  L R+  D +E+  + +EI  ++  ++ V+  H  REAN VAH +A
Subjt:  GSLITFGMRRVIRKWDMKSLEVKAIREGLRPIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVA

Query:  REATSFD
        R A   D
Subjt:  REATSFD

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]4.8e-1328.93Show/hide
Query:  MWSMWNFRNKAATEN-KSPAFNHIRIPIEESIHEWHISYLKRSSPKPARSQSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRR
        +WS+W +RN+      + P    IR   E  I+E+  + L  +     ++      W     + WKLN DATW ++L  GG+GW+VRDS G  I      
Subjt:  MWSMWNFRNKAATEN-KSPAFNHIRIPIEESIHEWHISYLKRSSPKPARSQSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRR

Query:  VIRKWDMKSLEVKAIREGLRPIVDTCT-QKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVAREATSF
                      + E L+ +  + T +  + +E+ESD L V+  + +    L+E+ +I ++I   +  L    F H   +AN VAH +AR A  F
Subjt:  VIRKWDMKSLEVKAIREGLRPIVDTCT-QKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVAREATSF

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]5.7e-1430.05Show/hide
Query:  WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPA-RSQSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRV
        W +WN RN      +  +F+ +   + + + E   SY   +S     ++ ++   W     + W LNADA+W ++  RGG+GW++R   G ++  G R V
Subjt:  WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPA-RSQSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRV

Query:  IRKWDMKSLEVKAIREGLRPIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVAREAT
            ++K LE  AI EGLR + +    +   L IE+DS  V   L R+ +DL++   + +EI +L    + + F+   RE N  AH +A+ A+
Subjt:  IRKWDMKSLEVKAIREGLRPIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVAREAT

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.6e-1631.6Show/hide
Query:  WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPARS------------QSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSS
        W +W  RNK+  +        I++ I+  I    I+   R +    +S             ++ A W    SN WKLN DA W  +   GG+GW++RD  
Subjt:  WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPARS------------QSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSS

Query:  GSLITFGMRRVIRKWDMKSLEVKAIREGLRPI-VDTCTQKKMS----LEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSV
        G +I    R +  + ++  LEV AI EGLR I  + C   +      + +ESDSL  I  L R+  D +E+  + +EI  ++  ++ V+  H  REAN V
Subjt:  GSLITFGMRRVIRKWDMKSLEVKAIREGLRPI-VDTCTQKKMS----LEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSV

Query:  AHWVAREATSFD
        AH +AR A   D
Subjt:  AHWVAREATSFD

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134127.0e-1831.88Show/hide
Query:  WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPARS------------QSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSS
        W +W  RNK+  +   P    I++ I+  I    I+   R++    +S             ++ A W    SN WKLN +A W  +   GG+GW++RD  
Subjt:  WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPARS------------QSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSS

Query:  GSLITFGMRRVIRKWDMKSLEVKAIREGLRPIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVA
        G +I    R +  + ++  LEV AI EGLR I     +    + +ESDSL  I  L R+  D +E+  + +EI  ++  ++ V+  H  REAN VAH +A
Subjt:  GSLITFGMRRVIRKWDMKSLEVKAIREGLRPIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVA

Query:  REATSFD
        R A   D
Subjt:  REATSFD

A0A6J1D4B6 uncharacterized protein LOC1110171812.3e-1328.93Show/hide
Query:  MWSMWNFRNKAATEN-KSPAFNHIRIPIEESIHEWHISYLKRSSPKPARSQSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRR
        +WS+W +RN+      + P    IR   E  I+E+  + L  +     ++      W     + WKLN DATW ++L  GG+GW+VRDS G  I      
Subjt:  MWSMWNFRNKAATEN-KSPAFNHIRIPIEESIHEWHISYLKRSSPKPARSQSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRR

Query:  VIRKWDMKSLEVKAIREGLRPIVDTCT-QKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVAREATSF
                      + E L+ +  + T +  + +E+ESD L V+  + +    L+E+ +I ++I   +  L    F H   +AN VAH +AR A  F
Subjt:  VIRKWDMKSLEVKAIREGLRPIVDTCT-QKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVAREATSF

A0A6J1DNV9 uncharacterized protein LOC1110224032.8e-1430.05Show/hide
Query:  WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPA-RSQSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRV
        W +WN RN      +  +F+ +   + + + E   SY   +S     ++ ++   W     + W LNADA+W ++  RGG+GW++R   G ++  G R V
Subjt:  WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPA-RSQSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRV

Query:  IRKWDMKSLEVKAIREGLRPIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVAREAT
            ++K LE  AI EGLR + +    +   L IE+DS  V   L R+ +DL++   + +EI +L    + + F+   RE N  AH +A+ A+
Subjt:  IRKWDMKSLEVKAIREGLRPIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVAREAT

A0A6J1DSV1 uncharacterized protein LOC1110236081.7e-1631.6Show/hide
Query:  WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPARS------------QSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSS
        W +W  RNK+  +        I++ I+  I    I+   R +    +S             ++ A W    SN WKLN DA W  +   GG+GW++RD  
Subjt:  WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPARS------------QSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSS

Query:  GSLITFGMRRVIRKWDMKSLEVKAIREGLRPI-VDTCTQKKMS----LEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSV
        G +I    R +  + ++  LEV AI EGLR I  + C   +      + +ESDSL  I  L R+  D +E+  + +EI  ++  ++ V+  H  REAN V
Subjt:  GSLITFGMRRVIRKWDMKSLEVKAIREGLRPI-VDTCTQKKMS----LEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSV

Query:  AHWVAREATSFD
        AH +AR A   D
Subjt:  AHWVAREATSFD

A0A6J5UAY2 Reverse transcriptase domain-containing protein2.3e-1332.99Show/hide
Query:  MWSMWNFRNKAATENKSPAFNHIRIP-IEESIHEW-----HISYLKRSSPKPARSQSSHAT-WIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLI
        +W +W  RN A  E  +    H+ +    + +HE+     H   L    P+P   Q+   T W K      K+N DA W +    GGVGWVVRDS G ++
Subjt:  MWSMWNFRNKAATENKSPAFNHIRIP-IEESIHEW-----HISYLKRSSPKPARSQSSHAT-WIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLI

Query:  TFGMRRVIRKWDMKSLEVKAIREGLRPIVDTCTQKKMS-LEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVA
          G +  +R     ++E +AIRE L      C Q  +S LE+ESDSL VI+ +  E +    +  I  +I  LV + Q   F +  R  N  AH +A
Subjt:  TFGMRRVIRKWDMKSLEVKAIREGLRPIVDTCTQKKMS-LEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.1e-1025Show/hide
Query:  MWSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHI-SYLKRSSPKPARSQSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRR
        +W +W  RN+   + K      +     E   EW     L+  +  P   ++    W      + K N DATW     R G+GW++R+ SG ++  G R 
Subjt:  MWSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHI-SYLKRSSPKPARSQSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRR

Query:  VIRKWDMKSLEVKAIREGLRPIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVAREATSF
        + R  ++   E++A+R  +   +     K++  E ++ +LV    L    D    ++   ++I  L+   + V F    R  N VA  +ARE+ SF
Subjt:  VIRKWDMKSLEVKAIREGLRPIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVAREATSF

AT4G29090.1 Ribonuclease H-like superfamily protein3.9e-1326.53Show/hide
Query:  MWSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHI-SYLKRSSPKPARSQSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRR
        +W +W  RN+     +      +    E+ + EW I +  +    KP  ++SS   W      + K N DATW  +  R G+GWV+R+  G +   G R 
Subjt:  MWSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHI-SYLKRSSPKPARSQSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRR

Query:  VIRKWDMKSLEVKAIREGLRPIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVAREATSF
        + +   +   E++A+R     ++     +   +  ESDS V+I+ L  + +    +K    ++  L+++   V F    RE N++A  VARE+ SF
Subjt:  VIRKWDMKSLEVKAIREGLRPIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVAREATSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGCATGTGGAATTTCAGAAACAAGGCCGCAACAGAAAACAAATCTCCAGCTTTTAATCACATCAGAATCCCGATCGAGGAAAGTATTCATGAATGGCATATCTC
TTACCTTAAGAGGAGCAGCCCGAAGCCCGCGAGGAGCCAATCGAGTCACGCAACGTGGATCAAATCGAAGTCTAACTTCTGGAAATTGAATGCAGACGCTACCTGGTTTA
ACAATTTGGGCAGAGGTGGAGTTGGCTGGGTCGTGCGTGACTCGTCTGGATCCTTGATCACCTTCGGTATGAGAAGAGTTATCAGAAAGTGGGACATGAAAAGTTTAGAA
GTGAAAGCTATTAGGGAGGGGCTGAGACCGATTGTCGATACCTGCACTCAAAAGAAGATGTCCCTCGAAATTGAATCGGACTCTCTGGTCGTGATTCAAGCATTGAAGAG
GGAAGGTGACGATTTATCGGAGATGAAGGTTATAGCAGACGAAATTTGCTCCCTTGTCGCTCGCCTCCAGGCCGTTAATTTCTCTCATTGCTTCAGAGAAGCCAATTCAG
TCGCTCACTGGGTTGCAAGGGAGGCAACATCTTTTGATTTTTGTTGTAATCAGGAGACATCCTTGTCTAAGGAAAAAGGGCAATCTTTTTGGGTCCCTGATGTTCCTTCT
TTTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGCATGTGGAATTTCAGAAACAAGGCCGCAACAGAAAACAAATCTCCAGCTTTTAATCACATCAGAATCCCGATCGAGGAAAGTATTCATGAATGGCATATCTC
TTACCTTAAGAGGAGCAGCCCGAAGCCCGCGAGGAGCCAATCGAGTCACGCAACGTGGATCAAATCGAAGTCTAACTTCTGGAAATTGAATGCAGACGCTACCTGGTTTA
ACAATTTGGGCAGAGGTGGAGTTGGCTGGGTCGTGCGTGACTCGTCTGGATCCTTGATCACCTTCGGTATGAGAAGAGTTATCAGAAAGTGGGACATGAAAAGTTTAGAA
GTGAAAGCTATTAGGGAGGGGCTGAGACCGATTGTCGATACCTGCACTCAAAAGAAGATGTCCCTCGAAATTGAATCGGACTCTCTGGTCGTGATTCAAGCATTGAAGAG
GGAAGGTGACGATTTATCGGAGATGAAGGTTATAGCAGACGAAATTTGCTCCCTTGTCGCTCGCCTCCAGGCCGTTAATTTCTCTCATTGCTTCAGAGAAGCCAATTCAG
TCGCTCACTGGGTTGCAAGGGAGGCAACATCTTTTGATTTTTGTTGTAATCAGGAGACATCCTTGTCTAAGGAAAAAGGGCAATCTTTTTGGGTCCCTGATGTTCCTTCT
TTTATTTGA
Protein sequenceShow/hide protein sequence
MWSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPARSQSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRVIRKWDMKSLE
VKAIREGLRPIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVAREATSFDFCCNQETSLSKEKGQSFWVPDVPS
FI