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Lag0017472 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017472
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr5:4081343..4082719
RNA-Seq ExpressionLag0017472
SyntenyLag0017472
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW13061.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]6.0e-2839.87Show/hide
Query:  SLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRK
        SL   P+ +   +EK+ RDF+WG G+      LV+W    L    GGLGV +L   N +L+ KW WRF+ ERD+LWR VIS  Y +   GW    + GR 
Subjt:  SLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRK

Query:  GNRLWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNA
        G  LW  I   +  F+    F    G+ ++FW+D+WC  +PL + F +L+ IS  KNA
Subjt:  GNRLWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNA

RVW13558.1 putative ribonuclease H protein [Vitis vinifera]4.6e-2837.21Show/hide
Query:  SLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRK
        SL   PK +   +EK+ RDF+WG G+ +    LV+W+        GGLG+ +L   N +L+ KWLWRF+ E DSLW+++ISS YD+   GW     R R 
Subjt:  SLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRK

Query:  GNRLWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNAPIASAGMESSSRGT
        G  +W  I + +  F   + F    G  ++FW+D WCD Q L++ F  L+ +S  K   +A A  E  + G+
Subjt:  GNRLWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNAPIASAGMESSSRGT

RVW65502.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]2.1e-2840.51Show/hide
Query:  SLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRK
        SL   P+ +   +EK+ RDF+WG G+      LV+W    L    GGLGV +L   N +L+ KW WRF+ ERD+LWR VIS  YD+   GW    + GR 
Subjt:  SLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRK

Query:  GNRLWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNA
        G  LW  I   +  F+    F    G+ ++FW+D+WC   PL + F +L+ IS  KNA
Subjt:  GNRLWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNA

RVW71569.1 putative ribonuclease H protein [Vitis vinifera]6.0e-2835.71Show/hide
Query:  SLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRK
        SL   PK +   +EK+ RDF+WG G+ +    LV W+        GGLG+ +L   N +L+ KWLWRF+ E +SLW+++ISS YD+   GW    +R R 
Subjt:  SLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRK

Query:  GNRLWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNAPIASAGMESSSRGTSPLEGQQTPL
        G  +W  I + +  F   + F    G  ++FW+D WC+ Q L++ F  L+ +S  K   +A A  E  +RG+  L    T +
Subjt:  GNRLWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNAPIASAGMESSSRGTSPLEGQQTPL

XP_022158566.1 uncharacterized protein LOC111025019 [Momordica charantia]1.8e-3239.39Show/hide
Query:  KAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRKGNR
        KAP SI K M K+ RD  W   +     +LVKW+ S+LP+  GGLG+G+   +N +L++KWLW F++E ++LWRRVI+SIY +   GW     +G+   R
Subjt:  KAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRKGNR

Query:  LWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNAPIASAGMESS
         W DIA +   F++   F A+ G  + FW D+W    PL D F +++ +S K+NA +     E +
Subjt:  LWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNAPIASAGMESS

TrEMBL top hitse value%identityAlignment
A0A2N9EGL0 Reverse transcriptase domain-containing protein2.2e-3140.24Show/hide
Query:  SLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRK
        SL   P S+   +E++ R+F+WG    +    LV W+    PINHGGLGV  +   N +L+ KWLWRF  E   LWRR I+S Y ++  GW    +RG  
Subjt:  SLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRK

Query:  GNRLWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNAPIASAGMESSS
        G  LW  I S +  F  +  F    G  + FW DRWC  +PLKD+F +LY  +  + A IAS    S+S
Subjt:  GNRLWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNAPIASAGMESSS

A0A2N9I472 Uncharacterized protein1.7e-3139.64Show/hide
Query:  SLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRK
        SL   P S+   +EK+ R+F+WG         LV W+    PI +GGLGV  +   N +L+ KWLWRF  E   LWRR I++ Y ++  GW    +RG  
Subjt:  SLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRK

Query:  GNRLWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNAPIASAGMESSS
        G  LW  I+S +  F  F  +    G  IRFW DRWC  +PLKD+F +L++ +  +NA +AS  ++S+S
Subjt:  GNRLWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNAPIASAGMESSS

A0A2N9J9V5 Reverse transcriptase domain-containing protein1.7e-3139.64Show/hide
Query:  SLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRK
        SL   P S+   +EK+ R+F+WG         LV W+    PI +GGLGV  +   N +L+ KWLWRF  E   LWRR I++ Y ++  GW    +RG  
Subjt:  SLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRK

Query:  GNRLWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNAPIASAGMESSS
        G  LW  I+S +  F  F  +    G  IRFW DRWC  +PLKD+F +L++ +  +NA +AS  ++S+S
Subjt:  GNRLWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNAPIASAGMESSS

A0A6J1E196 uncharacterized protein LOC1110250198.8e-3339.39Show/hide
Query:  KAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRKGNR
        KAP SI K M K+ RD  W   +     +LVKW+ S+LP+  GGLG+G+   +N +L++KWLW F++E ++LWRRVI+SIY +   GW     +G+   R
Subjt:  KAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRKGNR

Query:  LWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNAPIASAGMESS
         W DIA +   F++   F A+ G  + FW D+W    PL D F +++ +S K+NA +     E +
Subjt:  LWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNAPIASAGMESS

A0A803P465 Uncharacterized protein4.7e-3434Show/hide
Query:  SLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRK
        SL KAP+S+ KA+EK+ RDF+W       G  LV W+    P + GGLG+G LE RN SL++KWLWRF  E++SLW RV+ S Y     G   +L   +K
Subjt:  SLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRGRK

Query:  GNRL-----WVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNAPIASAGMESSSRGTSPLEGQQTPLKDLFSNLYLISQK
        G+RL     W DI+  +  F     F    G  IRFWED W D  PL   F +L +IS                      EG+ TP+K+L          
Subjt:  GNRL-----WVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNAPIASAGMESSSRGTSPLEGQQTPLKDLFSNLYLISQK

Query:  KNAPIASAGMESSSRGTSPLEGQQTPLKDLFSNLYLISQKKNAPIAECWNGEQQSWNLSFRRGLFDRELGSWVALVEKINLVR-LGDGQDSIRWSLDSSG
            I   G+                                        G  +SWN  FRR L DREL S ++L++K+  VR L   +DS  W  D SG
Subjt:  KNAPIASAGMESSSRGTSPLEGQQTPLKDLFSNLYLISQKKNAPIAECWNGEQQSWNLSFRRGLFDRELGSWVALVEKINLVR-LGDGQDSIRWSLDSSG

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657506.5e-1731.76Show/hide
Query:  STSLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRG
        S S +  P+SI+  +++++R F+WG  + K    LVKW     P   GGLGV + +  N +L+ K  WR  QE++SLW  V+   Y +  +     L+  
Subjt:  STSLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDLLRG

Query:  RKGNRLWVDIASDF-PPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDL
           +  W  IA            +    G+ IRFW DRW   +PL +L
Subjt:  RKGNRLWVDIASDF-PPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCAAAGAGAATTTAACTACATTAAGAAGTGTGCAAGTACTTCCCTCCTAAAAGCTCCCAAGTCTATCATCAAGGCTATGGAAAAAGTGACCAGAGATTTTGTCTG
GGGTGAGGGTAGCTACAAGCCCGGTGCAGATTTGGTTAAATGGGAGTGGTCTGCTTTGCCCATTAACCATGGCGGGCTCGGGGTGGGATCCTTGGAGCAAAGAAATACTT
CTCTGATGATTAAATGGTTGTGGCGATTCTCTCAAGAGAGAGATTCTTTGTGGAGAAGAGTCATTAGTAGTATCTACGACATTTCTTACCTTGGGTGGAAACCCGACTTG
CTGAGAGGGAGAAAAGGCAACAGACTGTGGGTGGACATTGCGTCTGACTTCCCCCCATTTGAGCAGTTCACGACTTTCACAGCTGATTGTGGAAGAAACATTAGGTTTTG
GGAGGATAGATGGTGTGATGCTCAGCCCCTTAAAGATCTCTTCTCCAACTTGTATTTGATTTCTCAAAAGAAGAATGCTCCCATCGCGAGTGCTGGAATGGAGAGCAGCA
GTCGTGGAACCTCTCCTTTAGAAGGGCAACAGACTCCCCTTAAAGATCTCTTCTCCAACTTGTATTTGATTTCTCAAAAGAAGAATGCTCCCATCGCGAGTGCTGGAATG
GAGAGCAGCAGTCGTGGAACCTCTCCTTTAGAAGGGCAACAGACTCCCCTTAAAGATCTCTTCTCCAACTTGTATTTGATTTCTCAAAAGAAGAATGCTCCCATCGCTGA
GTGCTGGAATGGAGAGCAGCAGTCGTGGAACCTCTCCTTTAGAAGGGGCCTTTTTGATAGAGAATTAGGCAGTTGGGTGGCTTTGGTGGAGAAGATTAACCTTGTGAGAC
TGGGGGATGGCCAAGATAGCATAAGATGGTCCCTCGATAGTTCTGGAAGTTCAGCCGGTGGTCTCTTTCTCCCTCAGCCTGCAGGTTATGTCTTAAGTCCGAGGAAGCTT
TAG
mRNA sequenceShow/hide mRNA sequence
ATGACTCAAAGAGAATTTAACTACATTAAGAAGTGTGCAAGTACTTCCCTCCTAAAAGCTCCCAAGTCTATCATCAAGGCTATGGAAAAAGTGACCAGAGATTTTGTCTG
GGGTGAGGGTAGCTACAAGCCCGGTGCAGATTTGGTTAAATGGGAGTGGTCTGCTTTGCCCATTAACCATGGCGGGCTCGGGGTGGGATCCTTGGAGCAAAGAAATACTT
CTCTGATGATTAAATGGTTGTGGCGATTCTCTCAAGAGAGAGATTCTTTGTGGAGAAGAGTCATTAGTAGTATCTACGACATTTCTTACCTTGGGTGGAAACCCGACTTG
CTGAGAGGGAGAAAAGGCAACAGACTGTGGGTGGACATTGCGTCTGACTTCCCCCCATTTGAGCAGTTCACGACTTTCACAGCTGATTGTGGAAGAAACATTAGGTTTTG
GGAGGATAGATGGTGTGATGCTCAGCCCCTTAAAGATCTCTTCTCCAACTTGTATTTGATTTCTCAAAAGAAGAATGCTCCCATCGCGAGTGCTGGAATGGAGAGCAGCA
GTCGTGGAACCTCTCCTTTAGAAGGGCAACAGACTCCCCTTAAAGATCTCTTCTCCAACTTGTATTTGATTTCTCAAAAGAAGAATGCTCCCATCGCGAGTGCTGGAATG
GAGAGCAGCAGTCGTGGAACCTCTCCTTTAGAAGGGCAACAGACTCCCCTTAAAGATCTCTTCTCCAACTTGTATTTGATTTCTCAAAAGAAGAATGCTCCCATCGCTGA
GTGCTGGAATGGAGAGCAGCAGTCGTGGAACCTCTCCTTTAGAAGGGGCCTTTTTGATAGAGAATTAGGCAGTTGGGTGGCTTTGGTGGAGAAGATTAACCTTGTGAGAC
TGGGGGATGGCCAAGATAGCATAAGATGGTCCCTCGATAGTTCTGGAAGTTCAGCCGGTGGTCTCTTTCTCCCTCAGCCTGCAGGTTATGTCTTAAGTCCGAGGAAGCTT
TAG
Protein sequenceShow/hide protein sequence
MTQREFNYIKKCASTSLLKAPKSIIKAMEKVTRDFVWGEGSYKPGADLVKWEWSALPINHGGLGVGSLEQRNTSLMIKWLWRFSQERDSLWRRVISSIYDISYLGWKPDL
LRGRKGNRLWVDIASDFPPFEQFTTFTADCGRNIRFWEDRWCDAQPLKDLFSNLYLISQKKNAPIASAGMESSSRGTSPLEGQQTPLKDLFSNLYLISQKKNAPIASAGM
ESSSRGTSPLEGQQTPLKDLFSNLYLISQKKNAPIAECWNGEQQSWNLSFRRGLFDRELGSWVALVEKINLVRLGDGQDSIRWSLDSSGSSAGGLFLPQPAGYVLSPRKL