; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017525 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017525
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr5:4888602..4889171
RNA-Seq ExpressionLag0017525
SyntenyLag0017525
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.2e-4243.92Show/hide
Query:  MIEKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALL
        +++KIQ+++ NW+++ LSK  R+TLI+S L S+P+Y +SVFK P  I  KIE     FLWNGAS+    +L+RW  IV S K +GGLGIH +  TN ALL
Subjt:  MIEKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALL

Query:  LKWIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY
         KW+W+FL E++ LW++ I +KY   +   FPS    SS+ SPW A+++     + N  W + +G     W DNW+   PL L   RL+
Subjt:  LKWIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.1e-4143.92Show/hide
Query:  MIEKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALL
        +++KIQ+++ +W+++ LSK  R+TLI+S L S+P+Y LSVFK P  I  KIE     FLWNG S+    +L+RW  +V S K +GGLGIH +  TN ALL
Subjt:  MIEKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALL

Query:  LKWIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY
         KW+W+FL E+  LW++ I +KY   +   FPSR   SS+ SPW A++      + N  W + +G     W DNW+   PL LV  RL+
Subjt:  LKWIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.4e-4043.39Show/hide
Query:  MIEKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALL
        +++KIQ+++ +W+++ LSK  R+TLI+S L S+P+Y LSVFK P  I  KIE     FLWNG S+    +L+RW  +V S K +GGLGIH +  TN ALL
Subjt:  MIEKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALL

Query:  LKWIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY
         KW+W+FL E+  LW++ I +KY   +   FPSR   SS+ SPW A++      + N  W + +G     W DNW+   PL L   RL+
Subjt:  LKWIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY

TYJ99315.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.0e-3945.45Show/hide
Query:  EKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALLLK
        +KIQ++++NW++A +SK  RLTLI S L+S+P+Y LSVF+AP+  C  IEK   KFLW G + S  ++L+ W   VS SK EGGLGI ++  TN ALL K
Subjt:  EKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALLLK

Query:  WIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY
        W+WR+L+E N LWR+ I  KY        PS  + S+S++PW +I    D   +N  WD+ NG     W+ NWS  G L     RL+
Subjt:  WIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY

TYK05718.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.8e-4045.45Show/hide
Query:  EKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALLLK
        +KIQ++++NW++A +SK  RLTLI S L+S+P+Y LSVF+AP+  C  IEK   KFLW G + S  ++L+ W   VS SK EGGLGI +++ TN ALL K
Subjt:  EKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALLLK

Query:  WIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY
        W+WR+L+E N LWR+ I  KY         S N+ S+S++PW +I    D   +N  WD+ NG     W+ NWS  G L     RL+
Subjt:  WIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.6e-4243.92Show/hide
Query:  MIEKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALL
        +++KIQ+++ NW+++ LSK  R+TLI+S L S+P+Y +SVFK P  I  KIE     FLWNGAS+    +L+RW  IV S K +GGLGIH +  TN ALL
Subjt:  MIEKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALL

Query:  LKWIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY
         KW+W+FL E++ LW++ I +KY   +   FPS    SS+ SPW A+++     + N  W + +G     W DNW+   PL L   RL+
Subjt:  LKWIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.0e-4143.92Show/hide
Query:  MIEKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALL
        +++KIQ+++ +W+++ LSK  R+TLI+S L S+P+Y LSVFK P  I  KIE     FLWNG S+    +L+RW  +V S K +GGLGIH +  TN ALL
Subjt:  MIEKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALL

Query:  LKWIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY
         KW+W+FL E+  LW++ I +KY   +   FPSR   SS+ SPW A++      + N  W + +G     W DNW+   PL LV  RL+
Subjt:  LKWIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein6.6e-4143.39Show/hide
Query:  MIEKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALL
        +++KIQ+++ +W+++ LSK  R+TLI+S L S+P+Y LSVFK P  I  KIE     FLWNG S+    +L+RW  +V S K +GGLGIH +  TN ALL
Subjt:  MIEKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALL

Query:  LKWIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY
         KW+W+FL E+  LW++ I +KY   +   FPSR   SS+ SPW A++      + N  W + +G     W DNW+   PL L   RL+
Subjt:  LKWIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY

A0A5D3BLV7 LINE-1 retrotransposable element ORF2 protein9.5e-4045.45Show/hide
Query:  EKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALLLK
        +KIQ++++NW++A +SK  RLTLI S L+S+P+Y LSVF+AP+  C  IEK   KFLW G + S  ++L+ W   VS SK EGGLGI ++  TN ALL K
Subjt:  EKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALLLK

Query:  WIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY
        W+WR+L+E N LWR+ I  KY        PS  + S+S++PW +I    D   +N  WD+ NG     W+ NWS  G L     RL+
Subjt:  WIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY

A0A5D3C3D0 LINE-1 retrotransposable element ORF2 protein4.3e-4045.45Show/hide
Query:  EKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALLLK
        +KIQ++++NW++A +SK  RLTLI S L+S+P+Y LSVF+AP+  C  IEK   KFLW G + S  ++L+ W   VS SK EGGLGI +++ TN ALL K
Subjt:  EKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALLLK

Query:  WIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY
        W+WR+L+E N LWR+ I  KY         S N+ S+S++PW +I    D   +N  WD+ NG     W+ NWS  G L     RL+
Subjt:  WIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657505.0e-2234.62Show/hide
Query:  MIEKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALL
        ++E++  R+  WR  +LS   RLTL  +VL+SMP++ +S    P SI N++++    FLW   +     +LV+W   V S K EGGLG+   K  N AL+
Subjt:  MIEKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALL

Query:  LKWIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAIS-KLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPL
         K  WR L E+N+LW   +  KY   +           S  S W +I+  L+DV+     W   +G     W D W S  PL
Subjt:  LKWIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAIS-KLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPL

P93295 Uncharacterized mitochondrial protein AtMg003102.2e-0925.17Show/hide
Query:  SMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALLLKWIWRFLNEENTLWRKFINNKY--SSLQFE
        ++P+Y +S F+    +C K+   + +F W+   +    + V W+ +  S + +GGLG   +   N ALL K  +R +++ +TL  + + ++Y   S   E
Subjt:  SMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALLLKWIWRFLNEENTLWRKFINNKY--SSLQFE

Query:  CFPSRNNVSSSRS-PWHAISKLQDVIFANFRWDIRNGGSTLSWHDNW
        C     +V +  S  W +I   ++++       I +G  T  W D W
Subjt:  CFPSRNNVSSSRS-PWHAISKLQDVIFANFRWDIRNGGSTLSWHDNW

Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.3e-1429.83Show/hide
Query:  MIEKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALL
        ++EKI+ RI  W    LS   RL LI SV++S+  + +S F+ P++   +I+     FLW+G   +     V W   V + K EGGLGI  +KE N    
Subjt:  MIEKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALL

Query:  LKWIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPL
                  + + W    N    S                  W  I K + +     + DI NG +T  W DNWS  G L
Subjt:  LKWIWRFLNEENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPL

AT3G25720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.3e-0934.51Show/hide
Query:  IIVSSSKAEGGLGIHKIKETNDALLLKWIWRFLNEENTLWRKFINNKYSSLQ-------FECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGST
        I V   KAEGGLG+    E N  L LK +WR  +   +LW  +  ++Y  LQ        + + S+  VS S + W  + +L+ +     R +I NG + 
Subjt:  IIVSSSKAEGGLGIHKIKETNDALLLKWIWRFLNEENTLWRKFINNKYSSLQ-------FECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGST

Query:  LSWHDNWSSFGPL
          W DNW+ FGPL
Subjt:  LSWHDNWSSFGPL

AT4G29090.1 Ribonuclease H-like superfamily protein1.6e-1027.15Show/hide
Query:  SMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALLLKWIWRFLNEENTLWRKFINNKYSSLQFECF
        ++P Y ++ F  P ++C +I   +  F W     +   +   W+ + S  KAEGG+G   I+  N ALL K +WR L+   +L  K   ++Y    F   
Subjt:  SMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALLLKWIWRFLNEENTLWRKFINNKYSSLQFECF

Query:  PSRNNVSSSRSP--WHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGP
           N    SR    W +I   Q+++    R  + NG   + W   W    P
Subjt:  PSRNNVSSSRSP--WHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGP

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.6e-1025.17Show/hide
Query:  SMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALLLKWIWRFLNEENTLWRKFINNKY--SSLQFE
        ++P+Y +S F+    +C K+   + +F W+   +    + V W+ +  S + +GGLG   +   N ALL K  +R +++ +TL  + + ++Y   S   E
Subjt:  SMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALLLKWIWRFLNEENTLWRKFINNKY--SSLQFE

Query:  CFPSRNNVSSSRS-PWHAISKLQDVIFANFRWDIRNGGSTLSWHDNW
        C     +V +  S  W +I   ++++       I +G  T  W D W
Subjt:  CFPSRNNVSSSRS-PWHAISKLQDVIFANFRWDIRNGGSTLSWHDNW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGAGAAGATTCAGCGAAGAATTCACAATTGGCGGTTTGCATCTCTTTCTAAAGAAAGTCGTCTCACTCTTATTCACTCGGTTCTCAATAGTATGCCCCTCTACAT
CCTCTCGGTTTTCAAAGCTCCAACGTCTATCTGCAACAAAATTGAAAAAAAAATTTGGAAATTCCTTTGGAATGGAGCTTCTTCTTCAGGCATCACTAACCTTGTGAGGT
GGGAAATAATTGTTTCTTCTTCTAAAGCAGAAGGCGGGCTTGGAATTCATAAAATTAAAGAGACCAACGACGCTCTTCTCCTTAAATGGATCTGGCGATTTCTCAATGAG
GAAAACACTCTTTGGAGGAAATTCATCAACAATAAATATTCCAGTCTTCAATTTGAGTGCTTTCCTTCAAGAAACAACGTCTCCAGTTCCAGATCTCCTTGGCATGCTAT
CTCTAAGCTTCAAGATGTTATCTTTGCTAATTTCAGATGGGATATTCGCAATGGTGGCTCTACCTTGTCTTGGCATGATAACTGGTCTTCCTTTGGCCCCTTAAAACTTG
TCTGCAACCGTTTATATTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCGAGAAGATTCAGCGAAGAATTCACAATTGGCGGTTTGCATCTCTTTCTAAAGAAAGTCGTCTCACTCTTATTCACTCGGTTCTCAATAGTATGCCCCTCTACAT
CCTCTCGGTTTTCAAAGCTCCAACGTCTATCTGCAACAAAATTGAAAAAAAAATTTGGAAATTCCTTTGGAATGGAGCTTCTTCTTCAGGCATCACTAACCTTGTGAGGT
GGGAAATAATTGTTTCTTCTTCTAAAGCAGAAGGCGGGCTTGGAATTCATAAAATTAAAGAGACCAACGACGCTCTTCTCCTTAAATGGATCTGGCGATTTCTCAATGAG
GAAAACACTCTTTGGAGGAAATTCATCAACAATAAATATTCCAGTCTTCAATTTGAGTGCTTTCCTTCAAGAAACAACGTCTCCAGTTCCAGATCTCCTTGGCATGCTAT
CTCTAAGCTTCAAGATGTTATCTTTGCTAATTTCAGATGGGATATTCGCAATGGTGGCTCTACCTTGTCTTGGCATGATAACTGGTCTTCCTTTGGCCCCTTAAAACTTG
TCTGCAACCGTTTATATTAG
Protein sequenceShow/hide protein sequence
MIEKIQRRIHNWRFASLSKESRLTLIHSVLNSMPLYILSVFKAPTSICNKIEKKIWKFLWNGASSSGITNLVRWEIIVSSSKAEGGLGIHKIKETNDALLLKWIWRFLNE
ENTLWRKFINNKYSSLQFECFPSRNNVSSSRSPWHAISKLQDVIFANFRWDIRNGGSTLSWHDNWSSFGPLKLVCNRLY