; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017526 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017526
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr5:4889226..4890800
RNA-Seq ExpressionLag0017526
SyntenyLag0017526
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056839.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.0e-2834.03Show/hide
Query:  WNFQPRRPLLDRDLLRWSEF------TNPQRGSDIRRWLASRDGLFTTKSARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTSDR
        WN +PRRPL +R+   W          +  RG     W  S    +T  SA+ I+    S P  +  EK L +LW ++IP+K K F+W + H+ +NT D+
Subjt:  WNFQPRRPLLDRDLLRWSEF------TNPQRGSDIRRWLASRDGLFTTKSARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTSDR

Query:  LQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPAT--IDSFCADLFASKAISQRQILRRNVFIATLWLLWNELNRRIFED
        +Q    +   NPS CI C  ++ED+ HLFI C    F RN  N+    +  P AT  +   C  L      + + I+  N  IATLW +W   N  IF D
Subjt:  LQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPAT--IDSFCADLFASKAISQRQILRRNVFIATLWLLWNELNRRIFED

Query:  KARTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTMTI
        K  +    WEDI +L   W++KSK   +Y    + + I
Subjt:  KARTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTMTI

RVW33074.1 putative ribonuclease H protein [Vitis vinifera]1.4e-2735.44Show/hide
Query:  WNFQPRRPLLDRD-------LLRWSEFTNPQRGSDIRRWLASRDGLFTTKS-ARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTS
        WNF  RR L D +       +  +          D R W  S  GLFT KS   A+S    S P           +W A +P K+K F+WL+ H+ +NT+
Subjt:  WNFQPRRPLLDRD-------LLRWSEFTNPQRGSDIRRWLASRDGLFTTKS-ARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTS

Query:  DRLQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPATIDSFCADLFASKAISQRQI-LRRNVFIATLWLLWNELNRRIFE
        D LQ        +P IC LC K+ E ++HLF+HCS      +++  +  +  V P +I    A  F     S+R I L +N  IA +W++W E N RIFE
Subjt:  DRLQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPATIDSFCADLFASKAISQRQI-LRRNVFIATLWLLWNELNRRIFE

Query:  DKARTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTM
        DKAR    LW+ I  L + WA  SKVF    L  L +
Subjt:  DKARTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTM

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-2733.05Show/hide
Query:  WNFQPRRPLLDRDLLRWSEF------TNPQRGSDIRRWLASRDGLFTTKSARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTSDR
        WN +PRRPL +R+   W          +  RG     W  S    +T  SA+ I+    S P  +  EK L +LW ++IP+K K F+W + H+ +NT D 
Subjt:  WNFQPRRPLLDRDLLRWSEF------TNPQRGSDIRRWLASRDGLFTTKSARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTSDR

Query:  LQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPATIDSFCADLFASKAISQRQILRRNVFIATLWLLWNELNRRIFEDKA
        +Q    +   NPS CI C  ++ED+ HLFI C  A    N  +   G   V    +   C  L      + + I+  N  IATLW +W   N  IF DK 
Subjt:  LQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPATIDSFCADLFASKAISQRQILRRNVFIATLWLLWNELNRRIFEDKA

Query:  RTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTMTI
         +    WEDI +L   W++KSK   +Y    + + I
Subjt:  RTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTMTI

TYK10356.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.5e-2831.78Show/hide
Query:  WNFQPRRPLLDRDLLRWSEFTNP------QRGSDIRRWLASRDGLFTTKSARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTSDR
        W+ +PRR L D +   W+E  N       + G D   W+ + DG ++  S +               +    NLW ++IPKK K F+W L + S+NT+D+
Subjt:  WNFQPRRPLLDRDLLRWSEFTNP------QRGSDIRRWLASRDGLFTTKSARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTSDR

Query:  LQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPATIDSFCADLFASKAISQRQILRRNVFIATLWLLWNELNRRIFEDKA
        L     N    PS C++C +N ED  HLFI C  A    N I+  L  S V   +    C  + + K  +++ I+  N + + LW +W E N RIF  K 
Subjt:  LQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPATIDSFCADLFASKAISQRQILRRNVFIATLWLLWNELNRRIFEDKA

Query:  RTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTMTI
        +T   LWEDI +LA LW ++  +F +Y    + + +
Subjt:  RTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTMTI

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]1.4e-2730.08Show/hide
Query:  WNFQPRRPLLDRDLLRWSEFTNP------QRGSDIRRWLASRDGLFTTKSARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTSDR
        W+  PRR L + +   W+E  N       + G+D   W  + +GL+T  S +               +    NLW  +IPKK   F+W L + S+NT+++
Subjt:  WNFQPRRPLLDRDLLRWSEFTNP------QRGSDIRRWLASRDGLFTTKSARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTSDR

Query:  LQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPATIDSFCADLFASKAISQRQILRRNVFIATLWLLWNELNRRIFEDKA
        L     N    PS C++C +N ED  HLFI C  A      I+  L  S V   +    C  + + K  +++ ++  N + + LW +W E N RIF  K 
Subjt:  LQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPATIDSFCADLFASKAISQRQILRRNVFIATLWLLWNELNRRIFEDKA

Query:  RTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTMTI
        +T  ++WEDI +LA LW ++S +F +Y    + + +
Subjt:  RTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTMTI

TrEMBL top hitse value%identityAlignment
A0A438GDE7 LINE-1 retrotransposable element ORF2 protein7.0e-2835.44Show/hide
Query:  WNFQPRRPLLDRD-------LLRWSEFTNPQRGSDIRRWLASRDGLFTTKS-ARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTS
        WNF  RR L D +       +  +          D R W  S  GLFT KS   A+S    S P           +W A +P K+K F+WL+ H+ +NT+
Subjt:  WNFQPRRPLLDRD-------LLRWSEFTNPQRGSDIRRWLASRDGLFTTKS-ARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTS

Query:  DRLQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPATIDSFCADLFASKAISQRQI-LRRNVFIATLWLLWNELNRRIFE
        D LQ        +P IC LC K+ E ++HLF+HCS      +++  +  +  V P +I    A  F     S+R I L +N  IA +W++W E N RIFE
Subjt:  DRLQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPATIDSFCADLFASKAISQRQI-LRRNVFIATLWLLWNELNRRIFE

Query:  DKARTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTM
        DKAR    LW+ I  L + WA  SKVF    L  L +
Subjt:  DKARTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTM

A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein4.8e-2934.03Show/hide
Query:  WNFQPRRPLLDRDLLRWSEF------TNPQRGSDIRRWLASRDGLFTTKSARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTSDR
        WN +PRRPL +R+   W          +  RG     W  S    +T  SA+ I+    S P  +  EK L +LW ++IP+K K F+W + H+ +NT D+
Subjt:  WNFQPRRPLLDRDLLRWSEF------TNPQRGSDIRRWLASRDGLFTTKSARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTSDR

Query:  LQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPAT--IDSFCADLFASKAISQRQILRRNVFIATLWLLWNELNRRIFED
        +Q    +   NPS CI C  ++ED+ HLFI C    F RN  N+    +  P AT  +   C  L      + + I+  N  IATLW +W   N  IF D
Subjt:  LQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPAT--IDSFCADLFASKAISQRQILRRNVFIATLWLLWNELNRRIFED

Query:  KARTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTMTI
        K  +    WEDI +L   W++KSK   +Y    + + I
Subjt:  KARTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTMTI

A0A5D3CJ08 LINE-1 retrotransposable element ORF2 protein3.1e-2831.78Show/hide
Query:  WNFQPRRPLLDRDLLRWSEFTNP------QRGSDIRRWLASRDGLFTTKSARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTSDR
        W+ +PRR L D +   W+E  N       + G D   W+ + DG ++  S +               +    NLW ++IPKK K F+W L + S+NT+D+
Subjt:  WNFQPRRPLLDRDLLRWSEFTNP------QRGSDIRRWLASRDGLFTTKSARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTSDR

Query:  LQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPATIDSFCADLFASKAISQRQILRRNVFIATLWLLWNELNRRIFEDKA
        L     N    PS C++C +N ED  HLFI C  A    N I+  L  S V   +    C  + + K  +++ I+  N + + LW +W E N RIF  K 
Subjt:  LQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPATIDSFCADLFASKAISQRQILRRNVFIATLWLLWNELNRRIFEDKA

Query:  RTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTMTI
        +T   LWEDI +LA LW ++  +F +Y    + + +
Subjt:  RTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTMTI

A0A5D3CPL6 LINE-1 retrotransposable element ORF2 protein7.0e-2830.08Show/hide
Query:  WNFQPRRPLLDRDLLRWSEFTNP------QRGSDIRRWLASRDGLFTTKSARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTSDR
        W+  PRR L + +   W+E  N       + G+D   W  + +GL+T  S +               +    NLW  +IPKK   F+W L + S+NT+++
Subjt:  WNFQPRRPLLDRDLLRWSEFTNP------QRGSDIRRWLASRDGLFTTKSARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTSDR

Query:  LQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPATIDSFCADLFASKAISQRQILRRNVFIATLWLLWNELNRRIFEDKA
        L     N    PS C++C +N ED  HLFI C  A      I+  L  S V   +    C  + + K  +++ ++  N + + LW +W E N RIF  K 
Subjt:  LQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPATIDSFCADLFASKAISQRQILRRNVFIATLWLLWNELNRRIFEDKA

Query:  RTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTMTI
        +T  ++WEDI +LA LW ++S +F +Y    + + +
Subjt:  RTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTMTI

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein7.0e-2830.08Show/hide
Query:  WNFQPRRPLLDRDLLRWSEFTNP------QRGSDIRRWLASRDGLFTTKSARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTSDR
        W+  PRR L + +   W+E  N       + G+D   W  + +GL+T  S +               +    NLW  +IPKK   F+W L + S+NT+++
Subjt:  WNFQPRRPLLDRDLLRWSEFTNP------QRGSDIRRWLASRDGLFTTKSARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTSDR

Query:  LQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPATIDSFCADLFASKAISQRQILRRNVFIATLWLLWNELNRRIFEDKA
        L     N    PS C++C +N ED  HLFI C  A      I+  L  S V   +    C  + + K  +++ ++  N + + LW +W E N RIF  K 
Subjt:  LQAIFQNSLHNPSICILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPATIDSFCADLFASKAISQRQILRRNVFIATLWLLWNELNRRIFEDKA

Query:  RTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTMTI
        +T  ++WEDI +LA LW ++S +F +Y    + + +
Subjt:  RTQNQLWEDIVSLAALWATKSKVFFDYVLQKLTMTI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAATTTTCAGCCTCGAAGACCTTTGCTTGATAGAGATTTACTAAGATGGAGCGAATTTACTAATCCTCAAAGGGGTTCGGATATTCGGCGTTGGCTGGCATCTAG
AGATGGTCTTTTCACCACTAAATCTGCGCGTGCTATATCATCAGTTCGTCCTTCAAGACCGTTTCATAGCCCTGGAGAAAAAATTCTCAACAATCTTTGGACTGCTAACA
TTCCAAAGAAAATTAAGGTCTTCATGTGGTTGCTCTTTCATCGTAGCATAAATACGTCGGATAGACTTCAAGCGATTTTTCAGAATTCTCTTCACAATCCATCAATCTGC
ATTCTATGTTGGAAGAATTCTGAAGATATTGAACATCTTTTCATCCACTGTAGTCACGCATCCTTTTTTAGGAACAAAATCAACCTTGCTTTGGGGCTCTCCACGGTTCC
TCCAGCAACTATAGATTCTTTTTGCGCTGATTTGTTTGCATCCAAAGCTATTTCACAAAGGCAAATTCTCAGAAGAAACGTTTTCATAGCTACCCTTTGGCTTTTGTGGA
ATGAGCTTAATCGTCGGATTTTTGAAGATAAAGCTCGCACTCAAAATCAACTCTGGGAGGACATCGTCTCTCTTGCTGCTCTTTGGGCTACGAAATCCAAAGTTTTCTTC
GATTATGTTCTCCAAAAATTGACTATGACCATATTATTAAATCGTTCTGTGATATTTTGTGCAGGATGGGCCCCGGTAAGCCAGCCCAGAAGGGGAAAAGGCCAAGATGG
AGAAGACCGAAGGGCCGGAGCCCAACCCGGCCCTCCAGACGTGACGCTCGGCCTCATCCCAAGGGAGAGGCCGAGCAAGTGGTCGGCCTGGCCCATTGCCGAGGCCGACC
AGGGCCAAAGGCCCAATGACACTCCGGTGGCGAGCAGCCGAAACCCTAAGGGGACTTACAAAAGGAAGGACCACCAACGCACACAGGCTAACTTAGGCATCGGAGCGCGT
GTGGCCTACACCACACCGGTGTGCAGCGTTTGTTTGTCTTGCAGGTCACGTTCTTCCCATATCCTTACAAATTCACTGTTGATCGTTGCGTGGAGCGAGGGGCAATCCCC
TAAGCGAAATTTGACCATCAACAGTTGGCGCCGTCTGTGGGGAGAGTTGACAAGCAAACGTTGTAGGCAACAAGTAAGTACAATGGAGAACGAAAATCAACTGACCACGG
GTGAGCCGAATCCTCCAATCCGGCTCCAGGCCCAGGAAGCCGAAATCGCGGAGATGAAGGGGAGGATGAACGAGATGGGGCAGAACTTGACTGAAATCCTCACTCTGCTG
AAAAAGCCTGATCTTGCCGGGAATGAGGAAGAGCATCCACTTAGAGACCCAAAAAAGGATAAGGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGAATTTTCAGCCTCGAAGACCTTTGCTTGATAGAGATTTACTAAGATGGAGCGAATTTACTAATCCTCAAAGGGGTTCGGATATTCGGCGTTGGCTGGCATCTAG
AGATGGTCTTTTCACCACTAAATCTGCGCGTGCTATATCATCAGTTCGTCCTTCAAGACCGTTTCATAGCCCTGGAGAAAAAATTCTCAACAATCTTTGGACTGCTAACA
TTCCAAAGAAAATTAAGGTCTTCATGTGGTTGCTCTTTCATCGTAGCATAAATACGTCGGATAGACTTCAAGCGATTTTTCAGAATTCTCTTCACAATCCATCAATCTGC
ATTCTATGTTGGAAGAATTCTGAAGATATTGAACATCTTTTCATCCACTGTAGTCACGCATCCTTTTTTAGGAACAAAATCAACCTTGCTTTGGGGCTCTCCACGGTTCC
TCCAGCAACTATAGATTCTTTTTGCGCTGATTTGTTTGCATCCAAAGCTATTTCACAAAGGCAAATTCTCAGAAGAAACGTTTTCATAGCTACCCTTTGGCTTTTGTGGA
ATGAGCTTAATCGTCGGATTTTTGAAGATAAAGCTCGCACTCAAAATCAACTCTGGGAGGACATCGTCTCTCTTGCTGCTCTTTGGGCTACGAAATCCAAAGTTTTCTTC
GATTATGTTCTCCAAAAATTGACTATGACCATATTATTAAATCGTTCTGTGATATTTTGTGCAGGATGGGCCCCGGTAAGCCAGCCCAGAAGGGGAAAAGGCCAAGATGG
AGAAGACCGAAGGGCCGGAGCCCAACCCGGCCCTCCAGACGTGACGCTCGGCCTCATCCCAAGGGAGAGGCCGAGCAAGTGGTCGGCCTGGCCCATTGCCGAGGCCGACC
AGGGCCAAAGGCCCAATGACACTCCGGTGGCGAGCAGCCGAAACCCTAAGGGGACTTACAAAAGGAAGGACCACCAACGCACACAGGCTAACTTAGGCATCGGAGCGCGT
GTGGCCTACACCACACCGGTGTGCAGCGTTTGTTTGTCTTGCAGGTCACGTTCTTCCCATATCCTTACAAATTCACTGTTGATCGTTGCGTGGAGCGAGGGGCAATCCCC
TAAGCGAAATTTGACCATCAACAGTTGGCGCCGTCTGTGGGGAGAGTTGACAAGCAAACGTTGTAGGCAACAAGTAAGTACAATGGAGAACGAAAATCAACTGACCACGG
GTGAGCCGAATCCTCCAATCCGGCTCCAGGCCCAGGAAGCCGAAATCGCGGAGATGAAGGGGAGGATGAACGAGATGGGGCAGAACTTGACTGAAATCCTCACTCTGCTG
AAAAAGCCTGATCTTGCCGGGAATGAGGAAGAGCATCCACTTAGAGACCCAAAAAAGGATAAGGGATAG
Protein sequenceShow/hide protein sequence
MWNFQPRRPLLDRDLLRWSEFTNPQRGSDIRRWLASRDGLFTTKSARAISSVRPSRPFHSPGEKILNNLWTANIPKKIKVFMWLLFHRSINTSDRLQAIFQNSLHNPSIC
ILCWKNSEDIEHLFIHCSHASFFRNKINLALGLSTVPPATIDSFCADLFASKAISQRQILRRNVFIATLWLLWNELNRRIFEDKARTQNQLWEDIVSLAALWATKSKVFF
DYVLQKLTMTILLNRSVIFCAGWAPVSQPRRGKGQDGEDRRAGAQPGPPDVTLGLIPRERPSKWSAWPIAEADQGQRPNDTPVASSRNPKGTYKRKDHQRTQANLGIGAR
VAYTTPVCSVCLSCRSRSSHILTNSLLIVAWSEGQSPKRNLTINSWRRLWGELTSKRCRQQVSTMENENQLTTGEPNPPIRLQAQEAEIAEMKGRMNEMGQNLTEILTLL
KKPDLAGNEEEHPLRDPKKDKG