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Lag0017540 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017540
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr5:5185991..5186446
RNA-Seq ExpressionLag0017540
SyntenyLag0017540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034095.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.4e-1042.57Show/hide
Query:  KYNPLFE------PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALK
        +YN L E      P  N+++VM+T   T E+RM E+++ ++ L KA+EERD +I  LK+ IE++  AESS    +KN NKGK I+Q+ QPQ S  + +L 
Subjt:  KYNPLFE------PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALK

Query:  L
        +
Subjt:  L

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]5.8e-1044.32Show/hide
Query:  PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALKL
        P  N+++VM+T   T E+RM E+++ ++ L KA+EERD +I  LK+ IE++  AESS    +KN NKGK I+Q+ QPQ S  + +L +
Subjt:  PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALKL

KAA0050337.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-1042.57Show/hide
Query:  KYNPLFE------PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALK
        +YN L E      P  N+++VM+T   T E+RM E++++++ L KA++ERD +I  LK+ IE++  AESS I  +KN NKGK I+Q+ QPQ S  + +L 
Subjt:  KYNPLFE------PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALK

Query:  L
        +
Subjt:  L

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.6e-1043.18Show/hide
Query:  PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALKL
        P  N+++VM+T   T E+RM E+++ ++ L KA+EERD +I  LK+ IE++   ESS   ++KN NKGK I+Q+ QPQ S  + +L +
Subjt:  PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALKL

TYK02263.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.9e-1043.18Show/hide
Query:  PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALKL
        P  N++++M+T   T E+RMT++++ ++ L KA+EERD +I  LK+ IE+   AESS    +KN NKGK I+Q+ QPQ S  + +L +
Subjt:  PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALKL

TrEMBL top hitse value%identityAlignment
A0A5A7SY17 Ty3-gypsy retrotransposon protein2.1e-1042.57Show/hide
Query:  KYNPLFE------PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALK
        +YN L E      P  N+++VM+T   T E+RM E+++ ++ L KA+EERD +I  LK+ IE++  AESS    +KN NKGK I+Q+ QPQ S  + +L 
Subjt:  KYNPLFE------PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALK

Query:  L
        +
Subjt:  L

A0A5A7TZU9 Ribonuclease H2.8e-1044.32Show/hide
Query:  PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALKL
        P  N+++VM+T   T E+RM E+++ ++ L KA+EERD +I  LK+ IE++  AESS    +KN NKGK I+Q+ QPQ S  + +L +
Subjt:  PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALKL

A0A5A7U7I7 Ty3-gypsy retrotransposon protein9.6e-1142.57Show/hide
Query:  KYNPLFE------PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALK
        +YN L E      P  N+++VM+T   T E+RM E++++++ L KA++ERD +I  LK+ IE++  AESS I  +KN NKGK I+Q+ QPQ S  + +L 
Subjt:  KYNPLFE------PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALK

Query:  L
        +
Subjt:  L

A0A5A7U9H0 Ty3-gypsy retrotransposon protein3.7e-1043.18Show/hide
Query:  PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALKL
        P  N+++VM+T   T E+RM E+++ ++ L KA+EERD +I  LK+ IE++   ESS   ++KN NKGK I+Q+ QPQ S  + +L +
Subjt:  PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALKL

A0A5D3BRH6 Ty3-gypsy retrotransposon protein4.8e-1043.18Show/hide
Query:  PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALKL
        P  N++++M+T   T E+RMT++++ ++ L KA+EERD +I  LK+ IE+   AESS    +KN NKGK I+Q+ QPQ S  + +L +
Subjt:  PDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIAESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGTTGTCATGAACAAGTCTTACATGAGTTCTACTGCTCATTGTTGCTTTAATGAACTAACGTTGCAAGAAGATAAAACTTCTATCGTTGCAAGCCAAGAAACAAC
CTTACAGGAGACATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTAACGTAGTGACTGTCATGATGACTAAGACAAAAACTATGGAAG
AAAGAATGACTGAGATGCAGGAGCACATTGACACCTTGACGAAGGCGATTGAAGAAAGAGATTCTCAAATTGAGCACCTAAAAAGTCAGATTGAGAACCAACGTATCGCT
GAATCAAGTCAAATCCAAGTCGTAAAAAATCACAACAAAGGAAAGACTATAGTGCAAGATGATCAACCACAATGTTCTGTTGGGTTATATGCCCTAAAACTCGTAGATAG
TGAATGTAACCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGTTGTCATGAACAAGTCTTACATGAGTTCTACTGCTCATTGTTGCTTTAATGAACTAACGTTGCAAGAAGATAAAACTTCTATCGTTGCAAGCCAAGAAACAAC
CTTACAGGAGACATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTAACGTAGTGACTGTCATGATGACTAAGACAAAAACTATGGAAG
AAAGAATGACTGAGATGCAGGAGCACATTGACACCTTGACGAAGGCGATTGAAGAAAGAGATTCTCAAATTGAGCACCTAAAAAGTCAGATTGAGAACCAACGTATCGCT
GAATCAAGTCAAATCCAAGTCGTAAAAAATCACAACAAAGGAAAGACTATAGTGCAAGATGATCAACCACAATGTTCTGTTGGGTTATATGCCCTAAAACTCGTAGATAG
TGAATGTAACCGTTGA
Protein sequenceShow/hide protein sequence
MVVVMNKSYMSSTAHCCFNELTLQEDKTSIVASQETTLQETYTNDKFLVKYNPLFEPDSNVVTVMMTKTKTMEERMTEMQEHIDTLTKAIEERDSQIEHLKSQIENQRIA
ESSQIQVVKNHNKGKTIVQDDQPQCSVGLYALKLVDSECNR