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Lag0017549 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017549
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr5:5260558..5261399
RNA-Seq ExpressionLag0017549
SyntenyLag0017549
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016903339.1 PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo]7.7e-2444.83Show/hide
Query:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------
        MS Y+ +DKLLIH FQDSL+G  S WYMQLD + +  W+ L D FLKQY +++DMTPDRLDLQ ME+K     K                          
Subjt:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------

Query:  ---------NMLKGSASTNFSDIMMIGEITEYEVKHGRIFDNGIE
                 + + GSASTNFSD++ IGE+ E+ VK+GRIFD   E
Subjt:  ---------NMLKGSASTNFSDIMMIGEITEYEVKHGRIFDNGIE

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]9.0e-2545.45Show/hide
Query:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------
        M+ Y QNDKLLIH FQDSL   AS WYMQLD++H+ SW++L D FLKQY H++DM PDRLDLQ ME+K   + K                          
Subjt:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------

Query:  -NMLK--------GSASTNFSDIMMIGEITEYEVKHGRIFDNGIESSIEDEEDCSRDQQVQVKEIEAAKVENVNPI
         N LK        GSASTNFSDIM IGE  EY V+HGR     I S+ ++     +    + KE E A V  V+PI
Subjt:  -NMLK--------GSASTNFSDIMMIGEITEYEVKHGRIFDNGIESSIEDEEDCSRDQQVQVKEIEAAKVENVNPI

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]6.3e-2645.51Show/hide
Query:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------
        M+ Y QNDKLLIH FQDSL G AS WYMQLD++H+ SW++L D FLKQY H++DM PDRLDLQ ME+K  ++ K                          
Subjt:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------

Query:  -NMLK--------GSASTNFSDIMMIGEITEYEVKHGRIFDNGIESSIEDEEDCSRDQQVQVKEIEA
         N LK        GSASTNFSDIM IGE  EY V+HGRI     E     +   S+ ++ +V+ + A
Subjt:  -NMLK--------GSASTNFSDIMMIGEITEYEVKHGRIFDNGIESSIEDEEDCSRDQQVQVKEIEA

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]2.0e-2444.31Show/hide
Query:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------
        M+ Y QNDKLLIH FQDSL G AS WYMQLD++++ SW++L D FLKQY H++DM PDRLDLQ ME+K   + K                          
Subjt:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------

Query:  -NMLK--------GSASTNFSDIMMIGEITEYEVKHGRIFDNGIESSIEDEEDCSRDQQVQVKEIEA
         N LK        G+ASTNFSDIM IGE  EY V+HGRI     E     +   S+ ++ +V+ + A
Subjt:  -NMLK--------GSASTNFSDIMMIGEITEYEVKHGRIFDNGIESSIEDEEDCSRDQQVQVKEIEA

XP_031742240.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116404130 [Cucumis sativus]5.9e-2445.52Show/hide
Query:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------
        M+ +  NDKLLIH FQDSL G A+ WY+QLDNTHI  W+ L D FLKQY H++DM PDRLDLQ ME+K   + K                          
Subjt:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------

Query:  -NMLK--------GSASTNFSDIMMIGEITEYEVKHGRIFDNGIE
         N L+        G+A+TNFSDI++IGE  EY +KHGR+ +   E
Subjt:  -NMLK--------GSASTNFSDIMMIGEITEYEVKHGRIFDNGIE

TrEMBL top hitse value%identityAlignment
A0A1S4E534 uncharacterized protein LOC1035028383.7e-2444.83Show/hide
Query:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------
        MS Y+ +DKLLIH FQDSL+G  S WYMQLD + +  W+ L D FLKQY +++DMTPDRLDLQ ME+K     K                          
Subjt:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------

Query:  ---------NMLKGSASTNFSDIMMIGEITEYEVKHGRIFDNGIE
                 + + GSASTNFSD++ IGE+ E+ VK+GRIFD   E
Subjt:  ---------NMLKGSASTNFSDIMMIGEITEYEVKHGRIFDNGIE

A0A5A7T401 Retrotrans_gag domain-containing protein3.7e-2444.83Show/hide
Query:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------
        MS Y+ +DKLLIH FQDSL+G  S WYMQLD + +  W+ L D FLKQY +++DMTPDRLDLQ ME+K     K                          
Subjt:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------

Query:  ---------NMLKGSASTNFSDIMMIGEITEYEVKHGRIFDNGIE
                 + + GSASTNFSD++ IGE+ E+ VK+GRIFD   E
Subjt:  ---------NMLKGSASTNFSDIMMIGEITEYEVKHGRIFDNGIE

A0A6J1CNY7 Ribonuclease H4.4e-2545.45Show/hide
Query:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------
        M+ Y QNDKLLIH FQDSL   AS WYMQLD++H+ SW++L D FLKQY H++DM PDRLDLQ ME+K   + K                          
Subjt:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------

Query:  -NMLK--------GSASTNFSDIMMIGEITEYEVKHGRIFDNGIESSIEDEEDCSRDQQVQVKEIEAAKVENVNPI
         N LK        GSASTNFSDIM IGE  EY V+HGR     I S+ ++     +    + KE E A V  V+PI
Subjt:  -NMLK--------GSASTNFSDIMMIGEITEYEVKHGRIFDNGIESSIEDEEDCSRDQQVQVKEIEAAKVENVNPI

A0A6J1D099 Ribonuclease H3.0e-2645.51Show/hide
Query:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------
        M+ Y QNDKLLIH FQDSL G AS WYMQLD++H+ SW++L D FLKQY H++DM PDRLDLQ ME+K  ++ K                          
Subjt:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------

Query:  -NMLK--------GSASTNFSDIMMIGEITEYEVKHGRIFDNGIESSIEDEEDCSRDQQVQVKEIEA
         N LK        GSASTNFSDIM IGE  EY V+HGRI     E     +   S+ ++ +V+ + A
Subjt:  -NMLK--------GSASTNFSDIMMIGEITEYEVKHGRIFDNGIESSIEDEEDCSRDQQVQVKEIEA

A0A6J1E2J7 Ribonuclease H9.8e-2544.31Show/hide
Query:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------
        M+ Y QNDKLLIH FQDSL G AS WYMQLD++++ SW++L D FLKQY H++DM PDRLDLQ ME+K   + K                          
Subjt:  MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALK--------------------------

Query:  -NMLK--------GSASTNFSDIMMIGEITEYEVKHGRIFDNGIESSIEDEEDCSRDQQVQVKEIEA
         N LK        G+ASTNFSDIM IGE  EY V+HGRI     E     +   S+ ++ +V+ + A
Subjt:  -NMLK--------GSASTNFSDIMMIGEITEYEVKHGRIFDNGIESSIEDEEDCSRDQQVQVKEIEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGATTATTCTCAAAATGACAAGCTCCTCATACACTATTTCCAAGATAGTTTGATTGGTCTAGCATCTTGTTGGTATATGCAATTAGACAATACACACATTCGTTC
TTGGAGGAGTTTGGTTGATTTCTTTTTGAAGCAATACATGCATGATGTAGACATGACTCCTGATCGATTAGACTTGCAGAACATGGAGAGGAAGGAGCCGAGAGCTTTAA
AGAATATGCTCAAAGGAAGTGCATCCACCAATTTTTCAGACATCATGATGATTGGAGAAATAACAGAATACGAGGTTAAGCATGGAAGGATATTCGATAATGGAATTGAA
TCTTCAATCGAAGACGAAGAAGACTGCTCAAGGGATCAACAAGTCCAAGTAAAGGAAATCGAGGCAGCAAAGGTGGAGAATGTCAATCCAATACCAATTGTGTTTATCGA
GTCTTCGTCGTGCTTATTTAGGAAAAACCTATTGGTACTCATGCTTACAATACCAATTCAATCTATCCATATCCAAAGTAATGTGATCCCAATATCATGGAAGAGCTTTA
GGTCATGCTTGAAAGAATCGAAGAATCATGTGCAAGATCGAATGAAGGCAGTTCAGGCGTTAATCACTAGAGTTTGGAGATTCTATTCATCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGATTATTCTCAAAATGACAAGCTCCTCATACACTATTTCCAAGATAGTTTGATTGGTCTAGCATCTTGTTGGTATATGCAATTAGACAATACACACATTCGTTC
TTGGAGGAGTTTGGTTGATTTCTTTTTGAAGCAATACATGCATGATGTAGACATGACTCCTGATCGATTAGACTTGCAGAACATGGAGAGGAAGGAGCCGAGAGCTTTAA
AGAATATGCTCAAAGGAAGTGCATCCACCAATTTTTCAGACATCATGATGATTGGAGAAATAACAGAATACGAGGTTAAGCATGGAAGGATATTCGATAATGGAATTGAA
TCTTCAATCGAAGACGAAGAAGACTGCTCAAGGGATCAACAAGTCCAAGTAAAGGAAATCGAGGCAGCAAAGGTGGAGAATGTCAATCCAATACCAATTGTGTTTATCGA
GTCTTCGTCGTGCTTATTTAGGAAAAACCTATTGGTACTCATGCTTACAATACCAATTCAATCTATCCATATCCAAAGTAATGTGATCCCAATATCATGGAAGAGCTTTA
GGTCATGCTTGAAAGAATCGAAGAATCATGTGCAAGATCGAATGAAGGCAGTTCAGGCGTTAATCACTAGAGTTTGGAGATTCTATTCATCGTGA
Protein sequenceShow/hide protein sequence
MSDYSQNDKLLIHYFQDSLIGLASCWYMQLDNTHIRSWRSLVDFFLKQYMHDVDMTPDRLDLQNMERKEPRALKNMLKGSASTNFSDIMMIGEITEYEVKHGRIFDNGIE
SSIEDEEDCSRDQQVQVKEIEAAKVENVNPIPIVFIESSSCLFRKNLLVLMLTIPIQSIHIQSNVIPISWKSFRSCLKESKNHVQDRMKAVQALITRVWRFYSS