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Lag0017552 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017552
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr5:5285463..5286388
RNA-Seq ExpressionLag0017552
SyntenyLag0017552
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_012852581.1 PREDICTED: uncharacterized protein LOC105972189 [Erythranthe guttata]5.3e-0829.17Show/hide
Query:  DTLSKAATLEELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKENRPE---CWSTPPMGVWKLNTDAACASSDQL
        D L +    ++L L +V C  +   RNK+ H ED   +     W   YL ++           L++    RPE    W+ PP+GV KLN DAA   + + 
Subjt:  DTLSKAATLEELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKENRPE---CWSTPPMGVWKLNTDAACASSDQL

Query:  TSLGLICREEKGEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFLSKK
          + LI R   G  V+     V   ++P   E   I + ++ A     +  + VESDCL  I  L K+
Subjt:  TSLGLICREEKGEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFLSKK

XP_015388332.1 uncharacterized protein LOC107178077 [Citrus sinensis]3.1e-0831.25Show/hide
Query:  EELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKENRPECWSTPPMGVWKLNTDAACASSDQLTSLGLICREEKG
        +EL L+VV C TI   +N            +        ++SF    +  S I LE Q+ NR + W+ PP G +K+N DAA    DQ+  LG+I R   G
Subjt:  EELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKENRPECWSTPPMGVWKLNTDAACASSDQLTSLGLICREEKG

Query:  EMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINF-LSKKAEI
        E+V ++      +++    E   +   IK A   G S  +I+E+D    ++  LSKK  I
Subjt:  EMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINF-LSKKAEI

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]7.4e-1029.87Show/hide
Query:  EELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKENRPEC-WSTPPMGVWKLNTDAACASSDQLTSLGLICREEK
        ++  L   T   I  DRN   H   +    +   WI  Y +++  A E +   P +      P C W  P     K+N+DAAC S+   T LGLI R+  
Subjt:  EELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKENRPEC-WSTPPMGVWKLNTDAACASSDQLTSLGLICREEK

Query:  GEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFL
        G ++ + ++++ + +NPL AE+  I + +K A     ++ L+VESDC   I  +
Subjt:  GEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFL

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.8e-0930.06Show/hide
Query:  TLSKAATLEELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKENRP--ECWSTPPMGVWKLNTDAACASSDQLTS
        +L++    ++L+L  +T   I NDRN + H + + P+    +W+  +L+S   +  + S+     Q  +RP  + W        KLNTDAAC  +   TS
Subjt:  TLSKAATLEELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKENRP--ECWSTPPMGVWKLNTDAACASSDQLTS

Query:  LGLICREEKGEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFL
         G I R+    +V ++++ V   ++PLLAE+  I + +K A     + +L VESD L  I  +
Subjt:  LGLICREEKGEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFL

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]1.8e-0832.28Show/hide
Query:  ELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLA--NEKRSSIPLENQKENRPECWSTPPMGVWKLNTDAACASSDQLTSLGLICREEK
        EL L  +TC  + NDR+ + + + IP   I  +WI KY E   +   N  +  IP  N+       W  P  GV K+NTDAA   S++ + +G++ RE  
Subjt:  ELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLA--NEKRSSIPLENQKENRPECWSTPPMGVWKLNTDAACASSDQLTSLGLICREEK

Query:  GEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFLSKKA
         E+V  + V   +   PLLA++  I + +  A  LG  + ++VE+D L  +N +  K+
Subjt:  GEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFLSKKA

TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047863.6e-1029.87Show/hide
Query:  EELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKENRPEC-WSTPPMGVWKLNTDAACASSDQLTSLGLICREEK
        ++  L   T   I  DRN   H   +    +   WI  Y +++  A E +   P +      P C W  P     K+N+DAAC S+   T LGLI R+  
Subjt:  EELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKENRPEC-WSTPPMGVWKLNTDAACASSDQLTSLGLICREEK

Query:  GEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFL
        G ++ + ++++ + +NPL AE+  I + +K A     ++ L+VESDC   I  +
Subjt:  GEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFL

A0A6J1CTE3 uncharacterized protein LOC1110145784.4e-0829.93Show/hide
Query:  LSKAATLEELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLAN-----EKRSSIPLENQKENRPECWSTPPMGVWKLNTDAACASSDQL
        L ++ +  +  LV V    I NDRN +     IP   I S WI  Y+  F + +     + R      +        WS PP G  K+N DAAC      
Subjt:  LSKAATLEELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLAN-----EKRSSIPLENQKENRPECWSTPPMGVWKLNTDAACASSDQL

Query:  TSLGLICREEKGEMVFSSTVYVDLRMNPLLAEVTTIF
        T +G++CR EKG+++ +++       +PL+AE   +F
Subjt:  TSLGLICREEKGEMVFSSTVYVDLRMNPLLAEVTTIF

A0A6J1DX30 uncharacterized protein LOC1110248741.4e-0930.06Show/hide
Query:  TLSKAATLEELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKENRP--ECWSTPPMGVWKLNTDAACASSDQLTS
        +L++    ++L+L  +T   I NDRN + H + + P+    +W+  +L+S   +  + S+     Q  +RP  + W        KLNTDAAC  +   TS
Subjt:  TLSKAATLEELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKENRP--ECWSTPPMGVWKLNTDAACASSDQLTS

Query:  LGLICREEKGEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFL
         G I R+    +V ++++ V   ++PLLAE+  I + +K A     + +L VESD L  I  +
Subjt:  LGLICREEKGEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFL

A0A6J1DZK3 uncharacterized protein LOC1110249688.8e-0932.28Show/hide
Query:  ELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLA--NEKRSSIPLENQKENRPECWSTPPMGVWKLNTDAACASSDQLTSLGLICREEK
        EL L  +TC  + NDR+ + + + IP   I  +WI KY E   +   N  +  IP  N+       W  P  GV K+NTDAA   S++ + +G++ RE  
Subjt:  ELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLA--NEKRSSIPLENQKENRPECWSTPPMGVWKLNTDAACASSDQLTSLGLICREEK

Query:  GEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFLSKKA
         E+V  + V   +   PLLA++  I + +  A  LG  + ++VE+D L  +N +  K+
Subjt:  GEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFLSKKA

A0A803Q185 Uncharacterized protein7.4e-0826.2Show/hide
Query:  RRDDVATGDTLSKAATLEELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKENRPECWSTPPMGVWKLNTDAACA
        + D++A    LS   + ++  + +V   ++ N RN  TH+  +P      +W  K LE F    +   S P E  +      W  P  G  K+N DA+  
Subjt:  RRDDVATGDTLSKAATLEELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKENRPECWSTPPMGVWKLNTDAACA

Query:  SSDQLTSLGLICREEKGEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFLSKKAEIWSEMEALENSI
        +    + LG + R E+G+++F+S+  +    +PL  E+  I K I+  L     ++  +E DCL  I  + KK +   +++ L   I
Subjt:  SSDQLTSLGLICREEKGEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFLSKKAEIWSEMEALENSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCCGCTCCGCGTCGCGATGACGTTGCGACAGGGGATACTCTGTCAAAAGCGGCAACCTTGGAGGAGCTCAGTTTGGTGGTTGTCACTTGCGGGACAATTTTGAA
TGATAGAAACAAAGTTACTCATAACGAAGATATTCCCCCAATTAACATATGGAGCCAGTGGATTAGAAAGTACCTCGAATCCTTTCTGTTAGCAAATGAGAAAAGATCCT
CGATCCCTCTAGAAAATCAAAAGGAGAATCGCCCTGAATGTTGGTCCACTCCTCCGATGGGTGTCTGGAAGCTCAACACGGACGCAGCCTGTGCTTCATCAGATCAGTTA
ACGAGTTTAGGGCTGATATGTAGAGAGGAGAAGGGCGAAATGGTTTTCTCGTCGACGGTATATGTCGATCTTCGTATGAACCCCCTTCTAGCCGAAGTAACTACAATTTT
CAAAGTAATAAAGAAGGCCCTGGTTTTGGGATGCTCGAAAAATTTAATTGTTGAATCTGACTGCTTGTCGACAATCAATTTTCTGTCAAAGAAGGCTGAAATTTGGAGCG
AAATGGAAGCTTTGGAAAATTCTATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCCGCTCCGCGTCGCGATGACGTTGCGACAGGGGATACTCTGTCAAAAGCGGCAACCTTGGAGGAGCTCAGTTTGGTGGTTGTCACTTGCGGGACAATTTTGAA
TGATAGAAACAAAGTTACTCATAACGAAGATATTCCCCCAATTAACATATGGAGCCAGTGGATTAGAAAGTACCTCGAATCCTTTCTGTTAGCAAATGAGAAAAGATCCT
CGATCCCTCTAGAAAATCAAAAGGAGAATCGCCCTGAATGTTGGTCCACTCCTCCGATGGGTGTCTGGAAGCTCAACACGGACGCAGCCTGTGCTTCATCAGATCAGTTA
ACGAGTTTAGGGCTGATATGTAGAGAGGAGAAGGGCGAAATGGTTTTCTCGTCGACGGTATATGTCGATCTTCGTATGAACCCCCTTCTAGCCGAAGTAACTACAATTTT
CAAAGTAATAAAGAAGGCCCTGGTTTTGGGATGCTCGAAAAATTTAATTGTTGAATCTGACTGCTTGTCGACAATCAATTTTCTGTCAAAGAAGGCTGAAATTTGGAGCG
AAATGGAAGCTTTGGAAAATTCTATCTAG
Protein sequenceShow/hide protein sequence
MSAAPRRDDVATGDTLSKAATLEELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKENRPECWSTPPMGVWKLNTDAACASSDQL
TSLGLICREEKGEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFLSKKAEIWSEMEALENSI