; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017571 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017571
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr5:5485028..5485621
RNA-Seq ExpressionLag0017571
SyntenyLag0017571
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]6.1e-3647.74Show/hide
Query:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI
        WTD  G+++AIRCR F FTLTGS + WF++LKR+SI+SFKELARAF+ QF G     +P   LLT+KQ+  ESL+DY+ RFN E LQVEG ++   L+  
Subjt:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI

Query:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKR------GRGRPDQGGYLKKFEKYTPTSIPQE
          G++DE+L+ S GK    T++E  SRAQ YMS  EL+ SK+  +   +Y+  +   KR   +R   R      G+GR  Q    +KFEKYTPT++P E
Subjt:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKR------GRGRPDQGGYLKKFEKYTPTSIPQE
XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]5.0e-3050Show/hide
Query:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI
        W D  GVS+A++CR F  TL+GSA+ WF +LKR SI+SFK LA+AF+ QF+G R   +P   LLT+KQ+  ESL DY+ RFN+E LQVEG +   +L+A 
Subjt:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI

Query:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQ--RIDKRGR
           + DE L  S GK  P T++E +SRAQKYMSA E   SK+ E E K+ S  + +   DK Q  R +KR R
Subjt:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQ--RIDKRGR
XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]8.0e-3650.79Show/hide
Query:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI
        W D   + +AIRCR F FTLTGSA++WF +LKR SI+SFKELA AF+ QF+G R   KP   LLT+KQ+  ESL++Y+ RFN+E LQVEG ++  AL+A 
Subjt:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI

Query:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLK-SKKLEREHKRYSSSDHDSKRDKRQRI----DKRGRGRPDQGGYLKKFEK
          G++DE+L+ S GK  P T+ E +SRAQKYMSA EL+  S+ LERE   YS+   + + +KR R        G GR  Q     KFEK
Subjt:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLK-SKKLEREHKRYSSSDHDSKRDKRQRI----DKRGRGRPDQGGYLKKFEK
XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]3.6e-3650.26Show/hide
Query:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI
        W D  GVS+A+RCR F  TL GSA+ WF +LKR SI+SFK LARAF+ QF+G R   +P   LLT+KQ+  ESLRDY+ RFN+E LQVEG ++  +L+A 
Subjt:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI

Query:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKRGRGRPDQGGYLKKFEKYTPTSIPQE
          G+ DE L  S GK  P T++E +SRAQ+YMSA E   SK+ E + KR +    +   DK Q      R R  Q    +KFEKYTPT++P E
Subjt:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKRGRGRPDQGGYLKKFEKYTPTSIPQE
XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]7.8e-3147.95Show/hide
Query:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI
        W D  GVSDAIRCR F  TL GSA+ WF +LKR SI+SFK LARAF+ QF+G R   +P   LLT+KQ+  ESL DY+ RFN+E LQ+EG ++  +L+A 
Subjt:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI

Query:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKRGRG
          G+ DE L  S  K  P T++E +SRAQ+YMSA E   SK+     +     +    + +  R +KR RG
Subjt:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKRGRG
TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166193.0e-3647.74Show/hide
Query:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI
        WTD  G+++AIRCR F FTLTGS + WF++LKR+SI+SFKELARAF+ QF G     +P   LLT+KQ+  ESL+DY+ RFN E LQVEG ++   L+  
Subjt:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI

Query:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKR------GRGRPDQGGYLKKFEKYTPTSIPQE
          G++DE+L+ S GK    T++E  SRAQ YMS  EL+ SK+  +   +Y+  +   KR   +R   R      G+GR  Q    +KFEKYTPT++P E
Subjt:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKR------GRGRPDQGGYLKKFEKYTPTSIPQE
A0A6J1D7D2 uncharacterized protein LOC1110183072.4e-3050Show/hide
Query:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI
        W D  GVS+A++CR F  TL+GSA+ WF +LKR SI+SFK LA+AF+ QF+G R   +P   LLT+KQ+  ESL DY+ RFN+E LQVEG +   +L+A 
Subjt:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI

Query:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQ--RIDKRGR
           + DE L  S GK  P T++E +SRAQKYMSA E   SK+ E E K+ S  + +   DK Q  R +KR R
Subjt:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQ--RIDKRGR
A0A6J1DWY0 uncharacterized protein LOC1110252931.7e-3650.26Show/hide
Query:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI
        W D  GVS+A+RCR F  TL GSA+ WF +LKR SI+SFK LARAF+ QF+G R   +P   LLT+KQ+  ESLRDY+ RFN+E LQVEG ++  +L+A 
Subjt:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI

Query:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKRGRGRPDQGGYLKKFEKYTPTSIPQE
          G+ DE L  S GK  P T++E +SRAQ+YMSA E   SK+ E + KR +    +   DK Q      R R  Q    +KFEKYTPT++P E
Subjt:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKRGRGRPDQGGYLKKFEKYTPTSIPQE
A0A6J1DZ49 uncharacterized protein LOC1110248513.9e-3650.79Show/hide
Query:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI
        W D   + +AIRCR F FTLTGSA++WF +LKR SI+SFKELA AF+ QF+G R   KP   LLT+KQ+  ESL++Y+ RFN+E LQVEG ++  AL+A 
Subjt:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI

Query:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLK-SKKLEREHKRYSSSDHDSKRDKRQRI----DKRGRGRPDQGGYLKKFEK
          G++DE+L+ S GK  P T+ E +SRAQKYMSA EL+  S+ LERE   YS+   + + +KR R        G GR  Q     KFEK
Subjt:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLK-SKKLEREHKRYSSSDHDSKRDKRQRI----DKRGRGRPDQGGYLKKFEK
A0A6J1E1E7 uncharacterized protein LOC1110255483.8e-3147.95Show/hide
Query:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI
        W D  GVSDAIRCR F  TL GSA+ WF +LKR SI+SFK LARAF+ QF+G R   +P   LLT+KQ+  ESL DY+ RFN+E LQ+EG ++  +L+A 
Subjt:  WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAI

Query:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKRGRG
          G+ DE L  S  K  P T++E +SRAQ+YMSA E   SK+     +     +    + +  R +KR RG
Subjt:  TVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKRGRG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTACAAAAACTAGATGGACTGACGGTGTCTCAGATGCAATCAGGTGCCGCGCATTCTTCTTCACACTGACAGGATCAGCCAAGCACTGGTTTGAAAGATTGAAGAG
GAGATCCATCACCTCTTTCAAGGAATTAGCCCGAGCGTTCCTCGCACAGTTTATGGGATCCAGAGAACTTCACAAGCCTCACATCAACCTCTTAACAGTCAAACAACAGC
CAGGTGAGAGCTTGCGTGATTACATAACGCGTTTCAACGACGAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAGCCCTCGTAGCCATCACAGTCGGGCTGGAAGAC
GAAAAACTGCTCAATTCAATAGGTAAGAGTCAACCTCAAACCTATGCAGAGTTCGTCTCCCGGGCACAGAAATACATGAGCGCAGAAGAGTTGCTTAAGTCAAAGAAGTT
AGAACGAGAACACAAGAGGTATTCTTCATCTGACCACGACAGTAAGAGGGACAAGAGGCAACGAATAGACAAAAGAGGTCGAGGCCGACCAGACCAAGGAGGCTACTTGA
AGAAGTTTGAGAAGTACACCCCTACTTCAATCCCACAGGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTACAAAAACTAGATGGACTGACGGTGTCTCAGATGCAATCAGGTGCCGCGCATTCTTCTTCACACTGACAGGATCAGCCAAGCACTGGTTTGAAAGATTGAAGAG
GAGATCCATCACCTCTTTCAAGGAATTAGCCCGAGCGTTCCTCGCACAGTTTATGGGATCCAGAGAACTTCACAAGCCTCACATCAACCTCTTAACAGTCAAACAACAGC
CAGGTGAGAGCTTGCGTGATTACATAACGCGTTTCAACGACGAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAGCCCTCGTAGCCATCACAGTCGGGCTGGAAGAC
GAAAAACTGCTCAATTCAATAGGTAAGAGTCAACCTCAAACCTATGCAGAGTTCGTCTCCCGGGCACAGAAATACATGAGCGCAGAAGAGTTGCTTAAGTCAAAGAAGTT
AGAACGAGAACACAAGAGGTATTCTTCATCTGACCACGACAGTAAGAGGGACAAGAGGCAACGAATAGACAAAAGAGGTCGAGGCCGACCAGACCAAGGAGGCTACTTGA
AGAAGTTTGAGAAGTACACCCCTACTTCAATCCCACAGGAGTAG
Protein sequenceShow/hide protein sequence
MPTKTRWTDGVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAITVGLED
EKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKRGRGRPDQGGYLKKFEKYTPTSIPQE