CuGenDBv2

Gene ID	Lag0017596
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	General transcription factor IIH subunit 5-like
Genome location	chr5:5811701..5813300
RNA-Seq Expression	Lag0017596
Synteny	Lag0017596
Gene Ontology terms	GO:0006294 - nucleotide-excision repair, preincision complex assembly (biological process) GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain (biological process) GO:0000439 - transcription factor TFIIH core complex (cellular component) GO:0005669 - transcription factor TFIID complex (cellular component) GO:0005675 - transcription factor TFIIH holo complex (cellular component)
InterPro domains	IPR009400 - TFIIH subunit TTDA/Tfb5 IPR035935 - TFB5-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596831.1 General transcription and DNA repair factor IIH subunit TFB5, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-30

93.15

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Query:  FDIMVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        FDIMVNAIKGLFISCDIPM QFIINYNASLP+SHRFIIHILDNTHMFVQP+VA+MIRNA+SEFRDQNSYEKPT
Subjt:  FDIMVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

KAG7028360.1 RNA polymerase II transcription factor B subunit 5, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-30

93.15

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Query:  FDIMVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        FDIMVNAIKGLFISCDIPM QFIINYNASLP+SHRFIIHILDNTHMFVQP+VA+MIRNA+SEFRDQNSYEKPT
Subjt:  FDIMVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

XP_008448918.1 PREDICTED: RNA polymerase II transcription factor B subunit 5 [Cucumis melo]

5.4e-29

92.86

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Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKG+FISCD+PMAQFIINYNASLP+SHRFIIHILDNTHMFVQPHVA+MIRNAISEFRDQ SYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

XP_022943513.1 RNA polymerase II transcription factor B subunit 5 [Cucurbita moschata]

9.2e-29

92.86

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Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKGLFISCDIPM QFIINYNASLP+SHRFIIHILDNTHMFVQP+VA+MIRNA+SEFRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

XP_038876808.1 general transcription and DNA repair factor IIH subunit TFB5 [Benincasa hispida]

3.2e-29

94.29

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Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKGLFISCD+PMAQFIINYNASLP+SHRFIIHILDNTHMFVQPHVA+MIRNAISEFRDQ SYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4F5 Uncharacterized protein

5.8e-29

92.86

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Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKG+FISCDIPMAQFIINYNASLP+SHRFIIHILDNTHMFVQPHVA+MIRNAISEFR+Q SYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

A0A1S3BK87 RNA polymerase II transcription factor B subunit 5

2.6e-29

92.86

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Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKG+FISCD+PMAQFIINYNASLP+SHRFIIHILDNTHMFVQPHVA+MIRNAISEFRDQ SYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

A0A6J1DFN4 RNA polymerase II transcription factor B subunit 5

8.4e-28

91.43

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Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKGLFISCD+PMAQFIINYNASLP+S RFIIHILDNTHMFVQP VA MI+NAISEFRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

A0A6J1FX17 RNA polymerase II transcription factor B subunit 5

4.5e-29

92.86

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Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKGLFISCDIPM QFIINYNASLP+SHRFIIHILDNTHMFVQP+VA+MIRNA+SEFRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

A0A6J1L2N1 RNA polymerase II transcription factor B subunit 5 isoform X1

4.5e-29

92.86

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Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKGLFISCDIPM QFIINYNASLP+SHRFIIHILDNTHMFVQP+VA+MIRNA+SEFRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

SwissProt top hits

e value

%identity

Alignment

Q2T9Z5 General transcription factor IIH subunit 5

1.0e-06

36.36

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Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSY
        MVN +KG+ I CD  M QF++  + S     +FII  +D+TH+FV   +  +++  + E  DQN++
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSY

Q5ZKH0 General transcription factor IIH subunit 5

3.5e-07

39.39

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Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSY
        MVN +KG+ I CD  M QF++  + S     +FII  LD TH+FV   +   ++  + E  DQNS+
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSY

Q6NNM0 General transcription and DNA repair factor IIH subunit TFB5

2.6e-26

75.71

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Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKG+F+SCDIPM QFI+N N S+P S +FIIH+LD+TH+FVQPHV +MIR+AIS+FRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

Q6ZYL4 General transcription factor IIH subunit 5

1.0e-06

36.36

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Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSY
        MVN +KG+ I CD  M QF++  + S     +FII  +D+TH+FV   +  +++  + E  DQN++
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSY

Q8K2X8 General transcription factor IIH subunit 5

2.3e-06

34.85

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Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSY
        MVN +KG+ I CD  M QF++  + +     +FII  +D+TH+FV   +  +++  + E  DQN++
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSY

Arabidopsis top hits

e value

%identity

Alignment

AT1G12400.1 Nucleotide excision repair, TFIIH, subunit TTDA

1.9e-27

75.71

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Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKG+F+SCDIPM QFI+N N S+P S +FIIH+LD+TH+FVQPHV +MIR+AIS+FRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

AT1G62886.1 Nucleotide excision repair, TFIIH, subunit TTDA

4.1e-19

62.86

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Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHI--LDNTHMFVQPHVAEMIRNAISEFRDQNSYEK
        MVN+IKG+FISCD+PMAQFI + N SLP+S +FII +  LD T MFV+P+  EMIR+A+ +FRD+NSY K
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHI--LDNTHMFVQPHVAEMIRNAISEFRDQNSYEK

Sequences

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CDS sequence

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ATGCTCGACTCGATTAAAATCTCTGAGAACTCAATATTCTTGATTAATCACTTGGAAATTGGAATGCAGGGACCCTTTCAGTTAAATTTGTTCTGCTGCCGGTTGAGGGT
GGACGTTTTTGACATCATGGTTAATGCCATTAAAGGGCTATTCATCTCCTGTGACATACCTATGGCACAATTTATCATCAATTACAATGCTTCATTGCCTTCATCCCACA
GATTTATCATCCATATTTTGGATAATACCCACATGTTTGTACAACCCCATGTAGCTGAGATGATTCGAAATGCCATTTCAGAATTTCGAGATCAGAATTCTTATGAGAAA
CCTACTTGA

mRNA sequence

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Protein sequence

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MLDSIKISENSIFLINHLEIGMQGPFQLNLFCCRLRVDVFDIMVNAIKGLFISCDIPMAQFIINYNASLPSSHRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEK
PT

Lag0017596 (gene) of Sponge gourd (AG-4) v1 genome