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Lag0017633 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017633
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr5:6158302..6160100
RNA-Seq ExpressionLag0017633
SyntenyLag0017633
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015381856.1 uncharacterized protein LOC107175052 [Citrus sinensis]4.8e-0832.39Show/hide
Query:  WFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDIPPVMVVSDAIGVINLLNKTDF
        W P   G+  ++VDAA D+ +NR  G+G + R+  G  I +  K  + +  V M E   +L G++  ++A A++       V+V  D+ GVI L+N    
Subjt:  WFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDIPPVMVVSDAIGVINLLNKTDF

Query:  DLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFA
         L EI +++ D       F+     H+ RS NV AH+LA+ A
Subjt:  DLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFA

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]9.3e-1235.42Show/hide
Query:  AHWFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDIPPVMVVSDAIGVINLLNKT
        A W P     W L+ +AA     N  GG+GW+ RD  G  I +  + I   R +  LE+M I EG+R++      RQ     P+ + SD++  I+LL++ 
Subjt:  AHWFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDIPPVMVVSDAIGVINLLNKT

Query:  DFDLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFA
          D  EI +L+E+   +  D E +S  HI R  N  AH LAR A
Subjt:  DFDLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.8e-1033.33Show/hide
Query:  WFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDI-PPVMVVSDAIGVINLLNKTD
        W P     W L+ DA+  D  +R GG+GW+ R   G  + +G + +E    V++LE   ILEG+R+L        NL +  P+ + +D+  V +LLN+  
Subjt:  WFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDI-PPVMVVSDAIGVINLLNKTD

Query:  FDLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFAA
         DL +  ++VE+  +L    E ++FA + R  N  AH+LA+ A+
Subjt:  FDLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFAA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.6e-1134.48Show/hide
Query:  AHWFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASR-QNLDIPPVMVVSDAIGVINLLNK
        A W P     W L+ DAA     N  GG+GW+ RD  G  I +  + I   R +  LE+M I EG+R++        Q     P+ + SD++  I+LL++
Subjt:  AHWFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASR-QNLDIPPVMVVSDAIGVINLLNK

Query:  TDFDLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFA
           D  EI +L+E+   +  D + +S  HI R  N  AH+LAR A
Subjt:  TDFDLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFA

XP_024190234.1 uncharacterized protein LOC112194221 [Rosa chinensis]6.3e-0832.39Show/hide
Query:  WFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDIPPVMVVSDAIGVINLLNKTDF
        W P       L+ DAA D  + +   +G + RD  G   C+G K + GN  +  +E + +  G+  LL   A  QNL     +V SD+  VI+ LNKT+ 
Subjt:  WFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDIPPVMVVSDAIGVINLLNKTDF

Query:  DLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFA
        DL     +++D + LA  FE + +  + R  N+ AH +A+ A
Subjt:  DLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFA

TrEMBL top hitse value%identityAlignment
A0A1R3H2R0 Reverse transcriptase6.7e-0834.51Show/hide
Query:  WFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDIPPVMVVSDAIGVINLLNKTDF
        W P A G   ++VDAA  +PQ+ G G+  +ARDS+G  +CS   +    +     E+ T+  G+   L+AR    N      ++ SD + V+  LNK   
Subjt:  WFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDIPPVMVVSDAIGVINLLNKTDF

Query:  DLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFA
           E   ++E+   LA  F+ ISF H+ R  NV AH+LA+ A
Subjt:  DLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFA

A0A6J1CP26 uncharacterized protein LOC1110134124.5e-1235.42Show/hide
Query:  AHWFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDIPPVMVVSDAIGVINLLNKT
        A W P     W L+ +AA     N  GG+GW+ RD  G  I +  + I   R +  LE+M I EG+R++      RQ     P+ + SD++  I+LL++ 
Subjt:  AHWFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDIPPVMVVSDAIGVINLLNKT

Query:  DFDLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFA
          D  EI +L+E+   +  D E +S  HI R  N  AH LAR A
Subjt:  DFDLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFA

A0A6J1DNV9 uncharacterized protein LOC1110224038.5e-1133.33Show/hide
Query:  WFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDI-PPVMVVSDAIGVINLLNKTD
        W P     W L+ DA+  D  +R GG+GW+ R   G  + +G + +E    V++LE   ILEG+R+L        NL +  P+ + +D+  V +LLN+  
Subjt:  WFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDI-PPVMVVSDAIGVINLLNKTD

Query:  FDLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFAA
         DL +  ++VE+  +L    E ++FA + R  N  AH+LA+ A+
Subjt:  FDLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFAA

A0A6J1DSV1 uncharacterized protein LOC1110236087.7e-1234.48Show/hide
Query:  AHWFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASR-QNLDIPPVMVVSDAIGVINLLNK
        A W P     W L+ DAA     N  GG+GW+ RD  G  I +  + I   R +  LE+M I EG+R++        Q     P+ + SD++  I+LL++
Subjt:  AHWFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASR-QNLDIPPVMVVSDAIGVINLLNK

Query:  TDFDLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFA
           D  EI +L+E+   +  D + +S  HI R  N  AH+LAR A
Subjt:  TDFDLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFA

Q2R147 Protein kinase domain containing protein, expressed1.7e-0627.21Show/hide
Query:  SQAHWFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDIPPVMVVSDAIGVINLLN
        ++ HW     G+  L+VD + D  + + GG+G + RD+SGST+ +  K ++  +     E+   +EG+   L          + P+++ +D + ++NLL 
Subjt:  SQAHWFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDIPPVMVVSDAIGVINLLN

Query:  KTDFDLMEISFLVEDFESLAVDFEFISFAHIPRSQN
        + + DL E++ LV++ + L  +   +    I RSQN
Subjt:  KTDFDLMEISFLVEDFESLAVDFEFISFAHIPRSQN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCAAGCCCATTGGTTCCCGCTGGCCCCTGGTTATTGGTTGCTCAGCGTAGATGCCGCTCATGATGACCCCCAAAACAGAGGGGGGGGGGTTGGTTGGTTAGCGCG
TGACTCCTCCGGTTCTACAATCTGTTCAGGCTTCAAGAGAATCGAAGGCAATCGACCTGTCAGAATGCTGGAGATGATGACGATTCTCGAAGGTATTAGAAGCTTGCTAA
TTGCGAGAGCTTCACGCCAAAATCTGGATATCCCGCCGGTGATGGTAGTCTCTGATGCCATCGGCGTTATTAATCTGTTGAACAAAACAGATTTTGATCTAATGGAAATC
TCGTTCTTAGTCGAAGATTTCGAGAGTCTGGCCGTTGATTTCGAGTTCATCTCCTTCGCCCACATCCCTCGTTCGCAAAATGTCGACGCTCACAATCTGGCGCGTTTTGC
CGCTTTTGGTTTTCTTGTCATCTTCTTTTATGGCAATCGCATTCGTTGCTTCGGCTCCTTGATTTTCTTCACCAGCCATGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTCAAGCCCATTGGTTCCCGCTGGCCCCTGGTTATTGGTTGCTCAGCGTAGATGCCGCTCATGATGACCCCCAAAACAGAGGGGGGGGGGTTGGTTGGTTAGCGCG
TGACTCCTCCGGTTCTACAATCTGTTCAGGCTTCAAGAGAATCGAAGGCAATCGACCTGTCAGAATGCTGGAGATGATGACGATTCTCGAAGGTATTAGAAGCTTGCTAA
TTGCGAGAGCTTCACGCCAAAATCTGGATATCCCGCCGGTGATGGTAGTCTCTGATGCCATCGGCGTTATTAATCTGTTGAACAAAACAGATTTTGATCTAATGGAAATC
TCGTTCTTAGTCGAAGATTTCGAGAGTCTGGCCGTTGATTTCGAGTTCATCTCCTTCGCCCACATCCCTCGTTCGCAAAATGTCGACGCTCACAATCTGGCGCGTTTTGC
CGCTTTTGGTTTTCTTGTCATCTTCTTTTATGGCAATCGCATTCGTTGCTTCGGCTCCTTGATTTTCTTCACCAGCCATGAATAG
Protein sequenceShow/hide protein sequence
MSQAHWFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDIPPVMVVSDAIGVINLLNKTDFDLMEI
SFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFAAFGFLVIFFYGNRIRCFGSLIFFTSHE