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Lag0017637 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017637
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description60S ribosomal protein L36
Genome locationchr5:6257419..6257767
RNA-Seq ExpressionLag0017637
SyntenyLag0017637
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000509 - Ribosomal protein L36e
IPR038097 - Ribosomal protein L36e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAG7874331.1 unnamed protein product, partial [Brassica rapa]5.3e-1667.5Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMRRFTFGYVVSPKGYED
        SKR LF++SLI EV GFAPYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMS+VLRKMR     Y + P+  +D
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMRRFTFGYVVSPKGYED

KAB5525490.1 hypothetical protein DKX38_023239 [Salix brachista]6.9e-1683.08Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRA-KKYEEMSNVLRKMR
        SKRVLFV+SLI EV GFAPYEKRI E+LKV KDK ALKVA+RKLGT KRA KK EEMSNVLRKMR
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRA-KKYEEMSNVLRKMR

KAB5532471.1 hypothetical protein DKX38_019141 [Salix brachista]6.9e-1683.08Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR
        SKRVLFV+SLI EV GFAPYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMSNVLRKMR
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR

XP_022554777.1 60S ribosomal protein L36-1 isoform X1 [Brassica napus]2.4e-1666.67Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMRRFTFGYVVSPKGYEDVVWL
        SKR LF++SLI EV GFAPYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMS+VLRKMR   F + +S    +DV+ L
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMRRFTFGYVVSPKGYEDVVWL

XP_026379716.1 60S ribosomal protein L36-2-like [Papaver somniferum]6.9e-1683.08Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRA-KKYEEMSNVLRKMR
        SKRVLFV+SLI EV GFAPYEKRI E+LKV KDK ALKVA+RKLGT KRA KK EEMSNVLRKMR
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRA-KKYEEMSNVLRKMR

TrEMBL top hitse value%identityAlignment
A0A0K9RTR6 60S ribosomal protein L363.3e-1683.08Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRA-KKYEEMSNVLRKMR
        SKRVLFV+SLI EV GFAPYEKRI E+LKV KDK ALKVA+RKLGT KRA KK EEMSNVLRKMR
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRA-KKYEEMSNVLRKMR

A0A6N2KR48 60S ribosomal protein L361.5e-1675Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMRR----FTFGYV
        SKRVLFV+SLI EV GFAPYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMSNVLRKMR+    F F +V
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMRR----FTFGYV

A9P9I5 60S ribosomal protein L363.3e-1683.08Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRA-KKYEEMSNVLRKMR
        SKRVLFV+SLI EV GFAPYEKRI E+LKV KDK ALKVA+RKLGT KRA KK EEMSNVLRKMR
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRA-KKYEEMSNVLRKMR

A9PCN6 60S ribosomal protein L363.3e-1683.08Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRA-KKYEEMSNVLRKMR
        SKRVLFV+SLI EV GFAPYEKRI E+LKV KDK ALKVA+RKLGT KRA KK EEMSNVLRKMR
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRA-KKYEEMSNVLRKMR

A9PD00 60S ribosomal protein L363.3e-1683.08Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR
        SKRVLFV+SLI EV GFAPYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMSNVLRKMR
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR

SwissProt top hitse value%identityAlignment
O80929 60S ribosomal protein L36-13.2e-1673.85Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR
        SKR +F++ LI EV G APYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMS+VLRKMR
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR

Q66KU4 60S ribosomal protein L361.5e-1055.22Show/hide
Query:  MSKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMRR
        ++K   FV+ +I EV GFAPYE+R  E+LKV KDK ALK  ++++GT  RAK K EE+SNVL  MR+
Subjt:  MSKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMRR

Q9LRB8 60S ribosomal protein L362.4e-1154.93Show/hide
Query:  MSKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRA-KKYEEMSNVLRKMRRFTFG
        +S+RV  V++++ EV G+APYE+R+ E+LKV KDK ALK+ +RKLGT  R  KK EEM+ VLRKM+  + G
Subjt:  MSKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRA-KKYEEMSNVLRKMRRFTFG

Q9LZ57 60S ribosomal protein L36-34.2e-1673.85Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR
        SKR +F+++LI EV G APYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMS+VLRKMR
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR

Q9M352 60S ribosomal protein L36-24.2e-1673.85Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR
        SKR +F+++LI EV G APYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMS+VLRKMR
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR

Arabidopsis top hitse value%identityAlignment
AT2G37600.1 Ribosomal protein L36e family protein2.3e-1773.85Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR
        SKR +F++ LI EV G APYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMS+VLRKMR
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR

AT2G37600.2 Ribosomal protein L36e family protein2.3e-1773.85Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR
        SKR +F++ LI EV G APYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMS+VLRKMR
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR

AT3G53740.2 Ribosomal protein L36e family protein3.0e-1773.85Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR
        SKR +F+++LI EV G APYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMS+VLRKMR
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR

AT3G53740.3 Ribosomal protein L36e family protein3.0e-1773.85Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR
        SKR +F+++LI EV G APYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMS+VLRKMR
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR

AT3G53740.4 Ribosomal protein L36e family protein3.0e-1773.85Show/hide
Query:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR
        SKR +F+++LI EV G APYEKRI E+LKV KDK ALKVA+RKLGT KRAK K EEMS+VLRKMR
Subjt:  SKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAK-KYEEMSNVLRKMR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAAAAGAGTTCTCTTTGTCCAGAGCTTGATCGACGAAGTTACTGGTTTTGCCCCATATGAGAAAAGAATTGATGAGGTTCTAAAAGTTCGAAAAGACAAGTGTGC
TTTGAAGGTAGCCAGGAGAAAACTTGGAACTCAGAAAAGAGCTAAGAAGTATGAGGAGATGTCCAACGTTCTAAGAAAAATGAGAAGGTTCACATTTGGATATGTTGTGA
GTCCTAAAGGTTACGAGGATGTAGTATGGTTAGCATTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTAAAAGAGTTCTCTTTGTCCAGAGCTTGATCGACGAAGTTACTGGTTTTGCCCCATATGAGAAAAGAATTGATGAGGTTCTAAAAGTTCGAAAAGACAAGTGTGC
TTTGAAGGTAGCCAGGAGAAAACTTGGAACTCAGAAAAGAGCTAAGAAGTATGAGGAGATGTCCAACGTTCTAAGAAAAATGAGAAGGTTCACATTTGGATATGTTGTGA
GTCCTAAAGGTTACGAGGATGTAGTATGGTTAGCATTCTAG
Protein sequenceShow/hide protein sequence
MSKRVLFVQSLIDEVTGFAPYEKRIDEVLKVRKDKCALKVARRKLGTQKRAKKYEEMSNVLRKMRRFTFGYVVSPKGYEDVVWLAF