; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017658 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017658
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr5:6455537..6456212
RNA-Seq ExpressionLag0017658
SyntenyLag0017658
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049700.1 T4.5 [Cucumis melo var. makuwa]6.5e-4455.72Show/hide
Query:  TTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHGDWIAKD
        + EKD  SP FLLSNICNL+S+RLD S+NF+LWKFQLT+ILKAHKL+GFIDG+   P                P  + SS++       NP + DWIAKD
Subjt:  TTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHGDWIAKD

Query:  QALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLNGLTIDY
        QAL+T+INATLSPEALAY + +T                S++  VNLKSDLQ+I KK DESI+AY+KRI EIKDKLANVS  +N+EDLLI  LNGL  +Y
Subjt:  QALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLNGLTIDY

Query:  N
        N
Subjt:  N

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]6.5e-4455.72Show/hide
Query:  TTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHGDWIAKD
        + EKD  SP FLLSNICNL+S+RLD S+NF+LWKFQLT+ILKAHKL+GFIDG+   P                P  + SS++       NP + DWIAKD
Subjt:  TTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHGDWIAKD

Query:  QALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLNGLTIDY
        QAL+T+INATLSPEALAY + +T                S++  VNLKSDLQ+I KK DESI+AY+KRI EIKDKLANVS  +N+EDLLI  LNGL  +Y
Subjt:  QALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLNGLTIDY

Query:  N
        N
Subjt:  N

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]6.5e-4455.72Show/hide
Query:  TTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHGDWIAKD
        + EKD  SP FLLSNICNL+S+RLD S+NF+LWKFQLT+ILKAHKL+GFIDG+   P                P  + SS++       NP + DWIAKD
Subjt:  TTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHGDWIAKD

Query:  QALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLNGLTIDY
        QAL+T+INATLSPEALAY + +T                S++  VNLKSDLQ+I KK DESI+AY+KRI EIKDKLANVS  +N+EDLLI  LNGL  +Y
Subjt:  QALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLNGLTIDY

Query:  N
        N
Subjt:  N

XP_016900446.1 PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]6.5e-4455.72Show/hide
Query:  TTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHGDWIAKD
        + EKD  SP FLLSNICNL+S+RLD S+NF+LWKFQLT+ILKAHKL+GFIDG+   P                P  + SS++       NP + DWIAKD
Subjt:  TTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHGDWIAKD

Query:  QALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLNGLTIDY
        QAL+T+INATLSPEALAY + +T                S++  VNLKSDLQ+I KK DESI+AY+KRI EIKDKLANVS  +N+EDLLI  LNGL  +Y
Subjt:  QALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLNGLTIDY

Query:  N
        N
Subjt:  N

XP_022150845.1 uncharacterized protein LOC111018892 [Momordica charantia]9.4e-5161.24Show/hide
Query:  MDSFTPTTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHG
        M S +  T+KDLHSP FLLSNICNLVSIRLD S++FILWKFQLT+ILKAHKLFGFIDGS+  P++FL    A+SS TE+   +T+S       VINP   
Subjt:  MDSFTPTTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHG

Query:  DWIAKDQALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLN
        DWIAKDQAL+TLINATLS EALAY + +                 S+   VNLKSDLQSI KK +ESI+AYVKRI EIKDK ANVSI +NDE LLI  LN
Subjt:  DWIAKDQALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLN

Query:  GLTIDYNNI
        GL+ +YN +
Subjt:  GLTIDYNNI

TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X23.2e-4455.72Show/hide
Query:  TTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHGDWIAKD
        + EKD  SP FLLSNICNL+S+RLD S+NF+LWKFQLT+ILKAHKL+GFIDG+   P                P  + SS++       NP + DWIAKD
Subjt:  TTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHGDWIAKD

Query:  QALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLNGLTIDY
        QAL+T+INATLSPEALAY + +T                S++  VNLKSDLQ+I KK DESI+AY+KRI EIKDKLANVS  +N+EDLLI  LNGL  +Y
Subjt:  QALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLNGLTIDY

Query:  N
        N
Subjt:  N

A0A1S3BIR3 uncharacterized protein LOC103490319 isoform X33.2e-4455.72Show/hide
Query:  TTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHGDWIAKD
        + EKD  SP FLLSNICNL+S+RLD S+NF+LWKFQLT+ILKAHKL+GFIDG+   P                P  + SS++       NP + DWIAKD
Subjt:  TTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHGDWIAKD

Query:  QALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLNGLTIDY
        QAL+T+INATLSPEALAY + +T                S++  VNLKSDLQ+I KK DESI+AY+KRI EIKDKLANVS  +N+EDLLI  LNGL  +Y
Subjt:  QALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLNGLTIDY

Query:  N
        N
Subjt:  N

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X13.2e-4455.72Show/hide
Query:  TTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHGDWIAKD
        + EKD  SP FLLSNICNL+S+RLD S+NF+LWKFQLT+ILKAHKL+GFIDG+   P                P  + SS++       NP + DWIAKD
Subjt:  TTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHGDWIAKD

Query:  QALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLNGLTIDY
        QAL+T+INATLSPEALAY + +T                S++  VNLKSDLQ+I KK DESI+AY+KRI EIKDKLANVS  +N+EDLLI  LNGL  +Y
Subjt:  QALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLNGLTIDY

Query:  N
        N
Subjt:  N

A0A5D3CLI6 T4.53.2e-4455.72Show/hide
Query:  TTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHGDWIAKD
        + EKD  SP FLLSNICNL+S+RLD S+NF+LWKFQLT+ILKAHKL+GFIDG+   P                P  + SS++       NP + DWIAKD
Subjt:  TTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHGDWIAKD

Query:  QALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLNGLTIDY
        QAL+T+INATLSPEALAY + +T                S++  VNLKSDLQ+I KK DESI+AY+KRI EIKDKLANVS  +N+EDLLI  LNGL  +Y
Subjt:  QALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLNGLTIDY

Query:  N
        N
Subjt:  N

A0A6J1D9L6 uncharacterized protein LOC1110188924.6e-5161.24Show/hide
Query:  MDSFTPTTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHG
        M S +  T+KDLHSP FLLSNICNLVSIRLD S++FILWKFQLT+ILKAHKLFGFIDGS+  P++FL    A+SS TE+   +T+S       VINP   
Subjt:  MDSFTPTTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHG

Query:  DWIAKDQALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLN
        DWIAKDQAL+TLINATLS EALAY + +                 S+   VNLKSDLQSI KK +ESI+AYVKRI EIKDK ANVSI +NDE LLI  LN
Subjt:  DWIAKDQALITLINATLSPEALAYALSATLPL-------------SKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLN

Query:  GLTIDYNNI
        GL+ +YN +
Subjt:  GLTIDYNNI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCCTTCACGCCTACTACTGAGAAGGACCTTCACTCTCCAAGTTTTTTGTTGTCTAATATTTGTAATCTGGTTTCTATCCGATTGGATTATTCTTCAAATTTTAT
TCTCTGGAAATTTCAGCTTACATCGATTCTTAAGGCTCATAAGCTCTTCGGCTTCATTGATGGTTCCATTCTACAGCCTGCTGAATTTCTTTCTTTGGTTGTTGCAACTT
CTTCAACCACTGAGAATCCTACTAATTCAACATCGTCTGCCTCTGAAGCAGCTACTCTTGTGATCAATCCGAAGCATGGTGATTGGATTGCAAAAGATCAAGCCCTAATA
ACGCTTATCAACGCTACCTTGTCTCCTGAAGCTCTTGCTTATGCGTTGTCAGCAACACTACCTCTAAGTAAAAATGTGGGAGTCAATTTGAAATCTGATTTGCAGTCCAT
TTCGAAGAAAGTGGATGAATCTATCGAGGCTTATGTCAAGAGGATCAATGAAATCAAAGACAAGTTAGCCAATGTCTCCATTATGGTCAATGATGAGGATCTTCTGATCT
GTACATTGAATGGGTTAACAATCGACTACAACAACATTTTGTACTTCGATGCGCACTCGAACACAATCAGTTTCTTTTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCCTTCACGCCTACTACTGAGAAGGACCTTCACTCTCCAAGTTTTTTGTTGTCTAATATTTGTAATCTGGTTTCTATCCGATTGGATTATTCTTCAAATTTTAT
TCTCTGGAAATTTCAGCTTACATCGATTCTTAAGGCTCATAAGCTCTTCGGCTTCATTGATGGTTCCATTCTACAGCCTGCTGAATTTCTTTCTTTGGTTGTTGCAACTT
CTTCAACCACTGAGAATCCTACTAATTCAACATCGTCTGCCTCTGAAGCAGCTACTCTTGTGATCAATCCGAAGCATGGTGATTGGATTGCAAAAGATCAAGCCCTAATA
ACGCTTATCAACGCTACCTTGTCTCCTGAAGCTCTTGCTTATGCGTTGTCAGCAACACTACCTCTAAGTAAAAATGTGGGAGTCAATTTGAAATCTGATTTGCAGTCCAT
TTCGAAGAAAGTGGATGAATCTATCGAGGCTTATGTCAAGAGGATCAATGAAATCAAAGACAAGTTAGCCAATGTCTCCATTATGGTCAATGATGAGGATCTTCTGATCT
GTACATTGAATGGGTTAACAATCGACTACAACAACATTTTGTACTTCGATGCGCACTCGAACACAATCAGTTTCTTTTGCTGA
Protein sequenceShow/hide protein sequence
MDSFTPTTEKDLHSPSFLLSNICNLVSIRLDYSSNFILWKFQLTSILKAHKLFGFIDGSILQPAEFLSLVVATSSTTENPTNSTSSASEAATLVINPKHGDWIAKDQALI
TLINATLSPEALAYALSATLPLSKNVGVNLKSDLQSISKKVDESIEAYVKRINEIKDKLANVSIMVNDEDLLICTLNGLTIDYNNILYFDAHSNTISFFC