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Lag0017660 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017660
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr5:6457863..6458405
RNA-Seq ExpressionLag0017660
SyntenyLag0017660
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
A0A2N9H1I5 Integrase catalytic domain-containing protein8.0e-0435.6Show/hide
Query:  SNNKFLISRQVWFDETSYPFAETNLPPPSSSTPSHSASFSYQLPYSILLSSSPSSVSL----PSSQSLPHPTPQPSI--NPIS-QQPCPSQAQPTSISTQ
        S+ +F +SR V FDE+ +PF+     P S S+PSHS++  +          S SS SL    PS+ S   P P P+   +PIS   P P    PTSIS  
Subjt:  SNNKFLISRQVWFDETSYPFAETNLPPPSSSTPSHSASFSYQLPYSILLSSSPSSVSL----PSSQSLPHPTPQPSI--NPIS-QQPCPSQAQPTSISTQ

Query:  SPTPSPTPPTNTLVPLSCAENVMSLPSTDTNICNDLPVTSFVTEPPV--TNKHLMQTKAKSGITKRKVYIVEKQCGD---LNTEPTCSTKA
          T    P T T +P        S+PST     + +PV + +  P     N H M T++KSGI K+K   V         LNTEP   T A
Subjt:  SPTPSPTPPTNTLVPLSCAENVMSLPSTDTNICNDLPVTSFVTEPPV--TNKHLMQTKAKSGITKRKVYIVEKQCGD---LNTEPTCSTKA

A0A2N9H7J7 Reverse transcriptase Ty1/copia-type domain-containing protein1.1e-0535.36Show/hide
Query:  SNNKFLISRQVWFDETSYPFAETNLPPPSSSTPSHSASFSYQLPYSILLSSSPSSV----SLPSSQSLPHPTPQPSINPISQQPCPSQAQPTSISTQSPT
        SNNK LISR V FDE ++PF  ++   P+  T S + S+   L Y       PS +    +L S  SL  PTP PS+  ++Q P P   Q        P 
Subjt:  SNNKFLISRQVWFDETSYPFAETNLPPPSSSTPSHSASFSYQLPYSILLSSSPSSV----SLPSSQSLPHPTPQPSINPISQQPCPSQAQPTSISTQSPT

Query:  PSPTPPTNTLVPLSCAENVMSLPSTDTNICNDLPVTSFVTEPPVTNKHLMQTKAKSGITKRKVYIVEKQCGDLNTEPTCST
        P PTPP  TL P + A    +LPS+ T                  N + +QT+ KSGITK+K +        L+TEP   T
Subjt:  PSPTPPTNTLVPLSCAENVMSLPSTDTNICNDLPVTSFVTEPPVTNKHLMQTKAKSGITKRKVYIVEKQCGDLNTEPTCST

A0A2N9HKM9 Uncharacterized protein6.1e-0435Show/hide
Query:  NNKFLISRQVWFDETSYPFAETNLPPPSSSTPSHSASFSYQLPYSILLSSSPSSVSLPSSQSLPHPTPQPSINPISQQPCPSQAQPTSISTQSP---TPS
        +++F +SR V FDE+ +PF + +  P  S  P+HS + +     ++L      S SLPS    P   P P +N  +  P P  A PTS++  S     PS
Subjt:  NNKFLISRQVWFDETSYPFAETNLPPPSSSTPSHSASFSYQLPYSILLSSSPSSVSLPSSQSLPHPTPQPSINPISQQPCPSQAQPTSISTQSP---TPS

Query:  PTPPTNTL----VPLSCAENVMSLPSTDTNICNDLPVTSFVTEPPVTNKHLMQTKAKSGITKRKVYIVEKQCGD-LNTEP
         T P +T     VP S    V S  +      +  PV    + P V N H MQT+ KSGITK+K  ++ K   D L+TEP
Subjt:  PTPPTNTL----VPLSCAENVMSLPSTDTNICNDLPVTSFVTEPPVTNKHLMQTKAKSGITKRKVYIVEKQCGD-LNTEP

A0A2N9HPM6 Integrase catalytic domain-containing protein6.1e-0435.6Show/hide
Query:  SNNKFLISRQVWFDETSYPFAETNLPPPSSSTPSHSASFSYQLPYSILLSSSPSSVSL----PSSQSLPHPTPQPSI--NPIS-QQPCPSQAQPTSISTQ
        S+ +F +SR V FDE+ +PF+     P S S+PSHS++  +          S SS SL    PS+ S   P P P+   +PIS   P P    PTSIS  
Subjt:  SNNKFLISRQVWFDETSYPFAETNLPPPSSSTPSHSASFSYQLPYSILLSSSPSSVSL----PSSQSLPHPTPQPSI--NPIS-QQPCPSQAQPTSISTQ

Query:  SPTPSPTPPTNTLVPLSCAENVMSLPSTDTNICNDLPVTSFVTEPPV--TNKHLMQTKAKSGITKRKVYIVEKQCGD---LNTEPTCSTKA
          T    P T T +P        S+PST     + +PV + +  P     N H M T++KSGI K+K   V         LNTEP   T A
Subjt:  SPTPSPTPPTNTLVPLSCAENVMSLPSTDTNICNDLPVTSFVTEPPV--TNKHLMQTKAKSGITKRKVYIVEKQCGD---LNTEPTCSTKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAACAACAAATTTCTTATTTCTCGTCAAGTCTGGTTTGATGAAACTTCTTATCCATTTGCTGAAACAAATCTTCCTCCTCCAAGTTCCTCTACTCCTTCACATTC
GGCTTCTTTTTCATATCAGTTGCCTTACTCTATTCTTCTCTCTTCTTCTCCTTCCTCTGTATCTCTACCTTCTTCACAGTCCCTACCACATCCAACACCCCAACCATCTA
TAAATCCTATATCCCAACAACCATGTCCAAGTCAAGCACAACCAACTTCTATATCTACACAATCTCCAACTCCAAGTCCAACTCCTCCAACAAACACTTTGGTGCCTTTA
TCATGTGCTGAGAATGTTATGTCTTTGCCCTCTACTGACACTAATATATGCAATGATTTACCTGTTACTTCTTTTGTTACCGAGCCACCTGTAACTAATAAGCATCTTAT
GCAAACTAAAGCCAAGTCGGGTATTACAAAAAGGAAAGTTTATATTGTTGAAAAACAGTGTGGTGATTTGAATACTGAACCTACATGTTCTACCAAAGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCAACAACAAATTTCTTATTTCTCGTCAAGTCTGGTTTGATGAAACTTCTTATCCATTTGCTGAAACAAATCTTCCTCCTCCAAGTTCCTCTACTCCTTCACATTC
GGCTTCTTTTTCATATCAGTTGCCTTACTCTATTCTTCTCTCTTCTTCTCCTTCCTCTGTATCTCTACCTTCTTCACAGTCCCTACCACATCCAACACCCCAACCATCTA
TAAATCCTATATCCCAACAACCATGTCCAAGTCAAGCACAACCAACTTCTATATCTACACAATCTCCAACTCCAAGTCCAACTCCTCCAACAAACACTTTGGTGCCTTTA
TCATGTGCTGAGAATGTTATGTCTTTGCCCTCTACTGACACTAATATATGCAATGATTTACCTGTTACTTCTTTTGTTACCGAGCCACCTGTAACTAATAAGCATCTTAT
GCAAACTAAAGCCAAGTCGGGTATTACAAAAAGGAAAGTTTATATTGTTGAAAAACAGTGTGGTGATTTGAATACTGAACCTACATGTTCTACCAAAGCCTAG
Protein sequenceShow/hide protein sequence
MSNNKFLISRQVWFDETSYPFAETNLPPPSSSTPSHSASFSYQLPYSILLSSSPSSVSLPSSQSLPHPTPQPSINPISQQPCPSQAQPTSISTQSPTPSPTPPTNTLVPL
SCAENVMSLPSTDTNICNDLPVTSFVTEPPVTNKHLMQTKAKSGITKRKVYIVEKQCGDLNTEPTCSTKA