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Lag0017661 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017661
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPolynucleotide phosphorylase 1
Genome locationchr5:6466875..6467650
RNA-Seq ExpressionLag0017661
SyntenyLag0017661
Gene Ontology termsGO:0000958 - mitochondrial mRNA catabolic process (biological process)
GO:0000965 - mitochondrial RNA 3'-end processing (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0000175 - 3'-5'-exoribonuclease activity (molecular function)
GO:0003723 - RNA binding (molecular function)
GO:0004654 - polyribonucleotide nucleotidyltransferase activity (molecular function)
InterPro domainsIPR004088 - K Homology domain, type 1
IPR012162 - Polyribonucleotide nucleotidyltransferase
IPR036612 - K Homology domain, type 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3441239.1 hypothetical protein FNV43_RR15152 [Rhamnella rubrinervis]3.9e-2372.53Show/hide
Query:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI
        +EM  SSPPP        PL  + + N +K NLIIGSGGKKVK IIEETGVEA+DTQD+GIVKITAKD SSLEK+KAIISNLTMVPTVGDI
Subjt:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI

KAF3442818.1 hypothetical protein FNV43_RR16736 [Rhamnella rubrinervis]3.9e-2373.63Show/hide
Query:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI
        SEM  SSPPP        PL  + + N +K NLIIGSGGKKVK IIEETGVEAIDTQD+GIVKITAKD SSLEK+K IISNLTMVPTVGDI
Subjt:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI

PON42102.1 Polyribonucleotide nucleotidyltransferase [Trema orientale]1.1e-2271.43Show/hide
Query:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI
        +EM  SSPPP        PL  + +   +K NLIIG+GGKKVK IIEETGVEAIDTQD+GIVKITAKD SSLEKSKA+ISNLTMVPTVGDI
Subjt:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI

XP_022147752.1 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1 [Momordica charantia]6.0e-2474.73Show/hide
Query:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI
        +EM NSSPPP        PL  + +   +K NLIIGSGGKKVK IIEETGVEAIDTQD+GIVKITAKD SSLEKSKAIISNLTMVPTVGDI
Subjt:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI

XP_022147753.1 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X2 [Momordica charantia]6.0e-2474.73Show/hide
Query:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI
        +EM NSSPPP        PL  + +   +K NLIIGSGGKKVK IIEETGVEAIDTQD+GIVKITAKD SSLEKSKAIISNLTMVPTVGDI
Subjt:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI

TrEMBL top hitse value%identityAlignment
A0A2P5AZX7 Polynucleotide phosphorylase 15.5e-2371.43Show/hide
Query:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI
        +EM  SSPPP        PL  + +   +K NLIIG+GGKKVK IIEETGVEAIDTQD+GIVKITAKD SSLEKSKA+ISNLTMVPTVGDI
Subjt:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI

A0A6I9QGD3 Polynucleotide phosphorylase 19.3e-2371.43Show/hide
Query:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI
        SEM   SPPP        PL  + +   +K NLIIGSGGKKVK IIEETG+EAIDTQD+GIVKITAKD SSLEKSKAII+NLTMVPTVGDI
Subjt:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI

A0A6J0PCQ8 Polynucleotide phosphorylase 19.3e-2371.43Show/hide
Query:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI
        SEM   SPPP        PL  + +   +K NLIIGSGGKKVK IIEETG+EAIDTQD+GIVKITAKD SSLEKSKAII+NLTMVPTVGDI
Subjt:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI

A0A6J1D259 Polynucleotide phosphorylase 12.9e-2474.73Show/hide
Query:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI
        +EM NSSPPP        PL  + +   +K NLIIGSGGKKVK IIEETGVEAIDTQD+GIVKITAKD SSLEKSKAIISNLTMVPTVGDI
Subjt:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI

A0A6J1D386 Polynucleotide phosphorylase 12.9e-2474.73Show/hide
Query:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI
        +EM NSSPPP        PL  + +   +K NLIIGSGGKKVK IIEETGVEAIDTQD+GIVKITAKD SSLEKSKAIISNLTMVPTVGDI
Subjt:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI

SwissProt top hitse value%identityAlignment
B8CW78 Polyribonucleotide nucleotidyltransferase4.5e-0637.96Show/hide
Query:  SLQRRRETQPSLSLSLALALPQTQPSEMFNSSPPPPLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLT
        +L+R RE +  +   +   + + +P      SP  PL    + +  K   IIG GGK + +II+ETGVE ID  D+G V I A+D  S  ++K II+ LT
Subjt:  SLQRRRETQPSLSLSLALALPQTQPSEMFNSSPPPPLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLT

Query:  MVPTVGDI
            VGDI
Subjt:  MVPTVGDI

C0R0E0 Polyribonucleotide nucleotidyltransferase2.6e-0638.36Show/hide
Query:  PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI
        P  +    N +K  ++IG GGK +K IIEETG + ++ QD G+V I A D  +L+K+  +I++    P VG++
Subjt:  PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI

Q69LE7 Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic1.1e-2062.64Show/hide
Query:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI
        +EM   SPPP        PL  + +    K NLIIGSGGK +K IIEETGV+AIDT D+G VKITA+D SSLEKSKAII+NLTMVP VG+I
Subjt:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI

Q6MDI2 Polyribonucleotide nucleotidyltransferase2.4e-0741.24Show/hide
Query:  LSLALALPQTQPSEMFNSSPPPPLKRLSQSNLK--KFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI
        L+  LA+  T   EM   +P     R+    +K  K  ++IG GGK+++ IIE+TGV+ ID  D G+V I A D  S+EK+KAII  LT    +G I
Subjt:  LSLALALPQTQPSEMFNSSPPPPLKRLSQSNLK--KFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI

Q8GZQ3 Polyribonucleotide nucleotidyltransferase 1, chloroplastic1.5e-1758.24Show/hide
Query:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI
        +EM   SPPP        PL  + + +  K   +IGSGGKKVK IIEE+GVEAID QD+G VKI A D +SLE++KAIIS LTMVP+VGDI
Subjt:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI

Arabidopsis top hitse value%identityAlignment
AT3G03710.1 polyribonucleotide nucleotidyltransferase, putative1.1e-1858.24Show/hide
Query:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI
        +EM   SPPP        PL  + + +  K   +IGSGGKKVK IIEE+GVEAID QD+G VKI A D +SLE++KAIIS LTMVP+VGDI
Subjt:  SEMFNSSPPP--------PLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLEKSKAIISNLTMVPTVGDI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGATCCTCAACATGCTCCAGTGCTGCCGCGGCTCAGCCGTCTCTCCTTCTTTCTCTCGCTCCAGCGCCGCCGCGAGACTCAGCCGTCTCTCTCTCTTTCTCTCGC
TCTAGCGTTGCCGCAAACTCAACCGTCGGAAATGTTCAATTCTTCTCCTCCTCCTCCTTTGAAAAGGCTTTCACAGTCCAACCTGAAAAAATTTAATCTAATCATTGGTA
GTGGTGGAAAAAAGGTGAAGAGAATTATAGAAGAAACAGGAGTCGAGGCTATTGACACTCAAGATGAAGGGATAGTTAAAATTACTGCAAAGGATTTCTCAAGCTTGGAA
AAATCTAAAGCTATTATTAGCAATCTAACTATGGTTCCTACCGTTGGTGATATATAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGATCCTCAACATGCTCCAGTGCTGCCGCGGCTCAGCCGTCTCTCCTTCTTTCTCTCGCTCCAGCGCCGCCGCGAGACTCAGCCGTCTCTCTCTCTTTCTCTCGC
TCTAGCGTTGCCGCAAACTCAACCGTCGGAAATGTTCAATTCTTCTCCTCCTCCTCCTTTGAAAAGGCTTTCACAGTCCAACCTGAAAAAATTTAATCTAATCATTGGTA
GTGGTGGAAAAAAGGTGAAGAGAATTATAGAAGAAACAGGAGTCGAGGCTATTGACACTCAAGATGAAGGGATAGTTAAAATTACTGCAAAGGATTTCTCAAGCTTGGAA
AAATCTAAAGCTATTATTAGCAATCTAACTATGGTTCCTACCGTTGGTGATATATAA
Protein sequenceShow/hide protein sequence
MWDPQHAPVLPRLSRLSFFLSLQRRRETQPSLSLSLALALPQTQPSEMFNSSPPPPLKRLSQSNLKKFNLIIGSGGKKVKRIIEETGVEAIDTQDEGIVKITAKDFSSLE
KSKAIISNLTMVPTVGDI