; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017683 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017683
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPeriodic tryptophan protein 2-like protein
Genome locationchr5:6767992..6769050
RNA-Seq ExpressionLag0017683
SyntenyLag0017683
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0032040 - small-subunit processome (cellular component)
GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome (cellular component)
GO:0005515 - protein binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR027145 - Periodic tryptophan protein 2
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606783.1 Periodic tryptophan protein 2, partial [Cucurbita argyrosperma subsp. sororia]5.8e-4082.88Show/hide
Query:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS
        E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL RRVV HR+ FKK VSVVKFSP+GAFIA+  GKLVQIWRS
Subjt:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS

Query:  LGFKKEFFPFE
         GFKKEFFPFE
Subjt:  LGFKKEFFPFE

XP_022948549.1 periodic tryptophan protein 2 isoform X2 [Cucurbita moschata]5.8e-4082.88Show/hide
Query:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS
        E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL RRVV HR+ FKK VSVVKFSP+GAFIA+  GKLVQIWRS
Subjt:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS

Query:  LGFKKEFFPFE
         GFKKEFFPFE
Subjt:  LGFKKEFFPFE

XP_022998916.1 periodic tryptophan protein 2 isoform X1 [Cucurbita maxima]2.0e-4083.78Show/hide
Query:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS
        E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL RRVV HR+ FKKLVSVVKFS +GAFIA+ IGKLVQIWRS
Subjt:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS

Query:  LGFKKEFFPFE
         GFKKEFFPFE
Subjt:  LGFKKEFFPFE

XP_022998917.1 periodic tryptophan protein 2 isoform X2 [Cucurbita maxima]2.0e-4083.78Show/hide
Query:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS
        E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL RRVV HR+ FKKLVSVVKFS +GAFIA+ IGKLVQIWRS
Subjt:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS

Query:  LGFKKEFFPFE
         GFKKEFFPFE
Subjt:  LGFKKEFFPFE

XP_023524820.1 periodic tryptophan protein 2 [Cucurbita pepo subsp. pepo]5.8e-4082.88Show/hide
Query:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS
        E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL RRVV HR+ FKK VSVVKFSP+GAFIA+  GKLVQIWRS
Subjt:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS

Query:  LGFKKEFFPFE
         GFKKEFFPFE
Subjt:  LGFKKEFFPFE

TrEMBL top hitse value%identityAlignment
A0A1S3BZ00 periodic tryptophan protein 2 homolog2.0e-3879.28Show/hide
Query:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS
        E+TLLISPV NRISVT+LVKSQ++TLP+QSSSNI RI +S DG FLFTVDEKNRC FINL RRVV HRISFKK VSVVKFSP+GA IA+  GKLVQIWR+
Subjt:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS

Query:  LGFKKEFFPFE
         GF+KEFFPFE
Subjt:  LGFKKEFFPFE

A0A6J1G9L5 periodic tryptophan protein 2 isoform X12.8e-4082.88Show/hide
Query:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS
        E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL RRVV HR+ FKK VSVVKFSP+GAFIA+  GKLVQIWRS
Subjt:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS

Query:  LGFKKEFFPFE
         GFKKEFFPFE
Subjt:  LGFKKEFFPFE

A0A6J1GA82 periodic tryptophan protein 2 isoform X22.8e-4082.88Show/hide
Query:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS
        E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL RRVV HR+ FKK VSVVKFSP+GAFIA+  GKLVQIWRS
Subjt:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS

Query:  LGFKKEFFPFE
         GFKKEFFPFE
Subjt:  LGFKKEFFPFE

A0A6J1K9C2 periodic tryptophan protein 2 isoform X29.6e-4183.78Show/hide
Query:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS
        E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL RRVV HR+ FKKLVSVVKFS +GAFIA+ IGKLVQIWRS
Subjt:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS

Query:  LGFKKEFFPFE
         GFKKEFFPFE
Subjt:  LGFKKEFFPFE

A0A6J1KBJ3 periodic tryptophan protein 2 isoform X19.6e-4183.78Show/hide
Query:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS
        E+TLLISPV NRISVT+LVKSQ++TLPVQSSSNI RI VS DGAFLFTVDEKNRC FINL RRVV HR+ FKKLVSVVKFS +GAFIA+ IGKLVQIWRS
Subjt:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS

Query:  LGFKKEFFPFE
         GFKKEFFPFE
Subjt:  LGFKKEFFPFE

SwissProt top hitse value%identityAlignment
P25635 Periodic tryptophan protein 21.5e-1439.81Show/hide
Query:  LISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFK
        L+SPV NR+SV +L+ ++S T   +   NI+ I ++  G  L ++DE  R   +N   R V H  +FK+  S VKFSP+G   ALA G+ +QIW++    
Subjt:  LISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFK

Query:  K--EFFPF
        K  +F PF
Subjt:  K--EFFPF

Q54PE0 Periodic tryptophan protein 2 homolog2.8e-1341.96Show/hide
Query:  LLFSKFENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKL
        +LF+   NT +ISPV NR++V +LV   S TLP+QS  NI R+ +S +G  L T DE      INL R+VV     F K    + FSPNGA IA+A+ + 
Subjt:  LLFSKFENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKL

Query:  VQIWRSLGFKKE
        V ++++   +K+
Subjt:  VQIWRSLGFKKE

Q8VYZ5 Periodic tryptophan protein 23.5e-3262.5Show/hide
Query:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS
        +NT LISPV NR+SVT+L K+ S TLP+++S+NI R+  S DG FL  VDE+NRC FINL RRVV HRI+FK  V  +KFSPNG FIA+ IGKLV+IWRS
Subjt:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS

Query:  LGFKKEFFPFEQ
         GF++   PFE+
Subjt:  LGFKKEFFPFEQ

Q9C1X1 Periodic tryptophan protein 2 homolog2.6e-1945.37Show/hide
Query:  LISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGF-
        ++SPV NR+SV NL  + S T P ++  NIS I +S     L +VDE+ RC   N LRR V H  +FK  V  ++FSPNG F A+++GKL+Q+WR+    
Subjt:  LISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGF-

Query:  -KKEFFPF
         ++EF PF
Subjt:  -KKEFFPF

Q9C270 Periodic tryptophan protein 2 homolog5.7e-1440Show/hide
Query:  VLAQFPLLFSKFENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIA
        V  Q  LLFS  + T L SPV NR++V NLV ++S TLP     NI+RI ++  G  L ++DE  +    N+ RRVV +  SFK  V+ + FSP+G    
Subjt:  VLAQFPLLFSKFENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIA

Query:  LAIGKLVQIW
        + +G+ +++W
Subjt:  LAIGKLVQIW

Arabidopsis top hitse value%identityAlignment
AT1G15440.1 periodic tryptophan protein 22.5e-3362.5Show/hide
Query:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS
        +NT LISPV NR+SVT+L K+ S TLP+++S+NI R+  S DG FL  VDE+NRC FINL RRVV HRI+FK  V  +KFSPNG FIA+ IGKLV+IWRS
Subjt:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS

Query:  LGFKKEFFPFEQ
         GF++   PFE+
Subjt:  LGFKKEFFPFEQ

AT1G15440.2 periodic tryptophan protein 22.5e-3362.5Show/hide
Query:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS
        +NT LISPV NR+SVT+L K+ S TLP+++S+NI R+  S DG FL  VDE+NRC FINL RRVV HRI+FK  V  +KFSPNG FIA+ IGKLV+IWRS
Subjt:  ENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLLRRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRS

Query:  LGFKKEFFPFEQ
         GF++   PFE+
Subjt:  LGFKKEFFPFEQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCCAACATGGGGGGAAGAACGACACTTCCCCCTCAACATACCGAAATTTTGCCAAGACCCTCCACCCTCGATTTCTTCTTCTCGCCAACAAAAGACCCACGCAGC
TCGTCCCTCCAACTCTCCTTCGTTCTTCCCTCGTCGGCAACCCCCTCTCTTTCTCCCTCTCGTGTTGTCGCCGCCAGTAGCAGACCCGCACGCCGTCTCCTACTCGCGTC
ACCGCTCCTCCTCTCGACTGCAGTTCTCTTTTTCCCCCCTCGATGTAAGCTTTTCTCTCTCTCATCTTTCGTGTTTTGGCAAGCAAGGACGTCAACTCTCTTCTTCTCTC
ATGTTTCGGCCAAGATCTGCAAGGAGAAGCTCGATTTCTTCCTCCCATCGTCGGGTTTCTCTCTCTCCCGATGTCTTCCCATTTTTAAACGGTAACCGCACCAATTCGCG
AGTTCTAGCACAATTTCCCCTTCTCTTTAGCAAATTCGAGAACACCCTGTTAATCTCACCCGTCGACAACCGAATCTCAGTTACCAACCTTGTGAAGTCTCAAAGCTCGA
CTCTTCCCGTTCAGTCATCGTCCAATATTTCCCGAATTGTCGTCTCTTTAGATGGGGCATTCTTGTTCACTGTTGACGAGAAGAATCGTTGCTTCTTCATCAATCTCCTA
CGACGAGTGGTGGCTCACCGTATTTCGTTCAAGAAGCTCGTCAGTGTCGTCAAATTCAGCCCCAATGGTGCATTTATTGCTCTTGCCATTGGGAAGTTGGTCCAAATTTG
GCGGTCACTGGGGTTCAAGAAAGAGTTCTTTCCCTTTGAACAAACTGGCAAGGACTTTTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCCAACATGGGGGGAAGAACGACACTTCCCCCTCAACATACCGAAATTTTGCCAAGACCCTCCACCCTCGATTTCTTCTTCTCGCCAACAAAAGACCCACGCAGC
TCGTCCCTCCAACTCTCCTTCGTTCTTCCCTCGTCGGCAACCCCCTCTCTTTCTCCCTCTCGTGTTGTCGCCGCCAGTAGCAGACCCGCACGCCGTCTCCTACTCGCGTC
ACCGCTCCTCCTCTCGACTGCAGTTCTCTTTTTCCCCCCTCGATGTAAGCTTTTCTCTCTCTCATCTTTCGTGTTTTGGCAAGCAAGGACGTCAACTCTCTTCTTCTCTC
ATGTTTCGGCCAAGATCTGCAAGGAGAAGCTCGATTTCTTCCTCCCATCGTCGGGTTTCTCTCTCTCCCGATGTCTTCCCATTTTTAAACGGTAACCGCACCAATTCGCG
AGTTCTAGCACAATTTCCCCTTCTCTTTAGCAAATTCGAGAACACCCTGTTAATCTCACCCGTCGACAACCGAATCTCAGTTACCAACCTTGTGAAGTCTCAAAGCTCGA
CTCTTCCCGTTCAGTCATCGTCCAATATTTCCCGAATTGTCGTCTCTTTAGATGGGGCATTCTTGTTCACTGTTGACGAGAAGAATCGTTGCTTCTTCATCAATCTCCTA
CGACGAGTGGTGGCTCACCGTATTTCGTTCAAGAAGCTCGTCAGTGTCGTCAAATTCAGCCCCAATGGTGCATTTATTGCTCTTGCCATTGGGAAGTTGGTCCAAATTTG
GCGGTCACTGGGGTTCAAGAAAGAGTTCTTTCCCTTTGAACAAACTGGCAAGGACTTTTGCTGA
Protein sequenceShow/hide protein sequence
MSPTWGEERHFPLNIPKFCQDPPPSISSSRQQKTHAARPSNSPSFFPRRQPPLFLPLVLSPPVADPHAVSYSRHRSSSRLQFSFSPLDVSFSLSHLSCFGKQGRQLSSSL
MFRPRSARRSSISSSHRRVSLSPDVFPFLNGNRTNSRVLAQFPLLFSKFENTLLISPVDNRISVTNLVKSQSSTLPVQSSSNISRIVVSLDGAFLFTVDEKNRCFFINLL
RRVVAHRISFKKLVSVVKFSPNGAFIALAIGKLVQIWRSLGFKKEFFPFEQTGKDFC