; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017695 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017695
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr5:6999297..7004828
RNA-Seq ExpressionLag0017695
SyntenyLag0017695
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037371.1 gag/pol protein [Cucumis melo var. makuwa]6.7e-3657.99Show/hide
Query:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALVA------HTRQSLMKNKRQEREPNIATS
        MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+M+HFNV EM   VIDE SQ    +        T +SLMK K Q+ E N+ATS
Subjt:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALVA------HTRQSLMKNKRQEREPNIATS

Query:  -KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVD-KGKCFHCNVHGHWNRNCP
         + FHR S+ G KF+PSSS     KKK K G+G N A+ AA K   K  D KG CFHCN  GHW RNCP
Subjt:  -KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVD-KGKCFHCNVHGHWNRNCP

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-3350.26Show/hide
Query:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALV----------------------------
        MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G VIDE SQ   ++                            
Subjt:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALV----------------------------

Query:  -AHTRQSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCP
           T +SLMK K Q+ E N+ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHCN  GHW RNCP
Subjt:  -AHTRQSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCP

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-3350.26Show/hide
Query:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALV----------------------------
        MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G VIDE SQ   ++                            
Subjt:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALV----------------------------

Query:  -AHTRQSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCP
           T +SLMK K Q+ E N+ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHCN  GHW RNCP
Subjt:  -AHTRQSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCP

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-3350.26Show/hide
Query:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALV----------------------------
        MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G VIDE SQ   ++                            
Subjt:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALV----------------------------

Query:  -AHTRQSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCP
           T +SLMK K Q+ E N+ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHCN  GHW RNCP
Subjt:  -AHTRQSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCP

TYK28896.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-3351.31Show/hide
Query:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVAL-------------------VAHTR-----
        MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G VIDE SQ   +                   +A+T      
Subjt:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVAL-------------------VAHTR-----

Query:  -----QSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCP
             +SLMK K Q+ E N+ATS + FHR S+ G K VPSSS     KKK      K N +AA    KAK   KG CFHCN  GHW RNCP
Subjt:  -----QSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCP

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein1.2e-3350.26Show/hide
Query:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALV----------------------------
        MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G VIDE SQ   ++                            
Subjt:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALV----------------------------

Query:  -AHTRQSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCP
           T +SLMK K Q+ E N+ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHCN  GHW RNCP
Subjt:  -AHTRQSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCP

A0A5A7T706 Gag/pol protein3.3e-3657.99Show/hide
Query:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALVA------HTRQSLMKNKRQEREPNIATS
        MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+M+HFNV EM   VIDE SQ    +        T +SLMK K Q+ E N+ATS
Subjt:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALVA------HTRQSLMKNKRQEREPNIATS

Query:  -KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVD-KGKCFHCNVHGHWNRNCP
         + FHR S+ G KF+PSSS     KKK K G+G N A+ AA K   K  D KG CFHCN  GHW RNCP
Subjt:  -KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVD-KGKCFHCNVHGHWNRNCP

A0A5A7TU93 Gag/pol protein1.2e-3350.26Show/hide
Query:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALV----------------------------
        MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G VIDE SQ   ++                            
Subjt:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALV----------------------------

Query:  -AHTRQSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCP
           T +SLMK K Q+ E N+ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHCN  GHW RNCP
Subjt:  -AHTRQSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCP

A0A5A7V4M1 Gag/pol protein1.2e-3350.26Show/hide
Query:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALV----------------------------
        MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G VIDE SQ   ++                            
Subjt:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALV----------------------------

Query:  -AHTRQSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCP
           T +SLMK K Q+ E N+ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHCN  GHW RNCP
Subjt:  -AHTRQSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCP

A0A5D3DYU3 Gag/pol protein5.2e-3451.31Show/hide
Query:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVAL-------------------VAHTR-----
        MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G VIDE SQ   +                   +A+T      
Subjt:  MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVAL-------------------VAHTR-----

Query:  -----QSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCP
             +SLMK K Q+ E N+ATS + FHR S+ G K VPSSS     KKK      K N +AA    KAK   KG CFHCN  GHW RNCP
Subjt:  -----QSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTACCGCTAAGGAGATCATGGACTCACTGCAGGAAATGTTTGGACAACTGTCCTCACAAGTTTGGCATGATGCCCTCAAGTTCATCTATAACTCACGCATGAAGGA
GGGGACATCTGTGCAAGAACCCATTCTTAATCTGATGGTTCACTTCAACGTGACGGAGATGAGCGGTGTCGTCATTGATGAGCAAAGTCAGGGTGTTGCACTTGTAGCAC
ACACACGTCAGTCTCTTATGAAGAATAAGAGACAAGAGAGAGAACCAAACATTGCCACCTCTAAGGGGTTCCACAGAGAATCTTCTTTTGGAATCAAATTTGTACCTTCA
TCTTCTAGGACTATGAGTTCCAAGAAGAAGAATAAGAGTGGGAAGGGGAAAAATAACGCTTCTGCTGCTGCTTGTAAGGGGAAAGCCAAAGTTGTAGATAAAGGAAAATG
TTTCCACTGCAATGTGCATGGACATTGGAATAGAAATTGCCCCAACAATGGAAGCTTGATGTTGGAGCAGCTGACGCATGGAAAGCATGTTGTTGTAGCAAGGGATGCTT
GTTGCTATAGCAAGATGCATGATGATGCTACAACAAGTGTGTTAGGTGTATACCCAAGAAATGGCTGCACTAAACCACAAAATCCTCCCATTAATCCAATACAATTGGCT
GATGATAGAGAACGAGGCATTAGAGACTATGCAGTCCCAAGGATGTGCAACTTCAACCCTGGAATTGTACGTCCTAAGCTTGACACTAAAAGGTTTGAACTTAAGCCTGT
TATGTTTCAAATGCTTACTGCAGCAGGACAGTTTGGAGGAAGTGCATCAGAAGATCCTCACTCTCACCTCAAATCATTCCTCGACATTTGCAACAAGTTCATCATTCCAG
GAGTTACCCCAAAACAACTTCAAGTCATATTATTTCCTTACTCGCTACGAAATGCTACTAAGCGGATTCCTCCCGGAACTCCTGATCTTTTGGGATGTGTTCCAACCCCA
ATGAAGTACTACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATATACAATGATCGTAGTGTGGATAATTGCCACACACTCTCTAAA
TCATCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTACCGCTAAGGAGATCATGGACTCACTGCAGGAAATGTTTGGACAACTGTCCTCACAAGTTTGGCATGATGCCCTCAAGTTCATCTATAACTCACGCATGAAGGA
GGGGACATCTGTGCAAGAACCCATTCTTAATCTGATGGTTCACTTCAACGTGACGGAGATGAGCGGTGTCGTCATTGATGAGCAAAGTCAGGGTGTTGCACTTGTAGCAC
ACACACGTCAGTCTCTTATGAAGAATAAGAGACAAGAGAGAGAACCAAACATTGCCACCTCTAAGGGGTTCCACAGAGAATCTTCTTTTGGAATCAAATTTGTACCTTCA
TCTTCTAGGACTATGAGTTCCAAGAAGAAGAATAAGAGTGGGAAGGGGAAAAATAACGCTTCTGCTGCTGCTTGTAAGGGGAAAGCCAAAGTTGTAGATAAAGGAAAATG
TTTCCACTGCAATGTGCATGGACATTGGAATAGAAATTGCCCCAACAATGGAAGCTTGATGTTGGAGCAGCTGACGCATGGAAAGCATGTTGTTGTAGCAAGGGATGCTT
GTTGCTATAGCAAGATGCATGATGATGCTACAACAAGTGTGTTAGGTGTATACCCAAGAAATGGCTGCACTAAACCACAAAATCCTCCCATTAATCCAATACAATTGGCT
GATGATAGAGAACGAGGCATTAGAGACTATGCAGTCCCAAGGATGTGCAACTTCAACCCTGGAATTGTACGTCCTAAGCTTGACACTAAAAGGTTTGAACTTAAGCCTGT
TATGTTTCAAATGCTTACTGCAGCAGGACAGTTTGGAGGAAGTGCATCAGAAGATCCTCACTCTCACCTCAAATCATTCCTCGACATTTGCAACAAGTTCATCATTCCAG
GAGTTACCCCAAAACAACTTCAAGTCATATTATTTCCTTACTCGCTACGAAATGCTACTAAGCGGATTCCTCCCGGAACTCCTGATCTTTTGGGATGTGTTCCAACCCCA
ATGAAGTACTACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATATACAATGATCGTAGTGTGGATAATTGCCACACACTCTCTAAA
TCATCCCTGA
Protein sequenceShow/hide protein sequence
MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALVAHTRQSLMKNKRQEREPNIATSKGFHRESSFGIKFVPS
SSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCPNNGSLMLEQLTHGKHVVVARDACCYSKMHDDATTSVLGVYPRNGCTKPQNPPINPIQLA
DDRERGIRDYAVPRMCNFNPGIVRPKLDTKRFELKPVMFQMLTAAGQFGGSASEDPHSHLKSFLDICNKFIIPGVTPKQLQVILFPYSLRNATKRIPPGTPDLLGCVPTP
MKYYRSSTRQLAIPSSVTGVHQYTMIVVWIIATHSLNHP