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Lag0017708 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017708
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr5:7400786..7401088
RNA-Seq ExpressionLag0017708
SyntenyLag0017708
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]1.3e-1872.06Show/hide
Query:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSS
        +S +KD+ SPIFLLSNICNLIS+RLDSTNFVLWKFQL +ILKAHKL+GFIDG+  CPP+  +SS+ S+
Subjt:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSS

XP_022152751.1 uncharacterized protein LOC111020396 isoform X1 [Momordica charantia]2.0e-1968.92Show/hide
Query:  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAA
        I+ D +SPIFLLSNICNLIS+RLDSTNF+LWKFQL +ILKAHKLF FIDGS+  P K +++S L SS+S+D A+
Subjt:  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAA

XP_022152752.1 uncharacterized protein LOC111020396 isoform X2 [Momordica charantia]2.0e-1968.92Show/hide
Query:  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAA
        I+ D +SPIFLLSNICNLIS+RLDSTNF+LWKFQL +ILKAHKLF FIDGS+  P K +++S L SS+S+D A+
Subjt:  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAA

XP_022152753.1 uncharacterized protein LOC111020396 isoform X3 [Momordica charantia]2.0e-1968.92Show/hide
Query:  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAA
        I+ D +SPIFLLSNICNLIS+RLDSTNF+LWKFQL +ILKAHKLF FIDGS+  P K +++S L SS+S+D A+
Subjt:  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAA

XP_022152754.1 uncharacterized protein LOC111020396 isoform X4 [Momordica charantia]2.0e-1968.92Show/hide
Query:  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAA
        I+ D +SPIFLLSNICNLIS+RLDSTNF+LWKFQL +ILKAHKLF FIDGS+  P K +++S L SS+S+D A+
Subjt:  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAA

TrEMBL top hitse value%identityAlignment
A0A5D3CLI6 T4.56.4e-1972.06Show/hide
Query:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSS
        +S +KD+ SPIFLLSNICNLIS+RLDSTNFVLWKFQL +ILKAHKL+GFIDG+  CPP+  +SS+ S+
Subjt:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSS

A0A6J1DFQ7 uncharacterized protein LOC111020396 isoform X39.8e-2068.92Show/hide
Query:  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAA
        I+ D +SPIFLLSNICNLIS+RLDSTNF+LWKFQL +ILKAHKLF FIDGS+  P K +++S L SS+S+D A+
Subjt:  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAA

A0A6J1DGZ1 uncharacterized protein LOC111020396 isoform X49.8e-2068.92Show/hide
Query:  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAA
        I+ D +SPIFLLSNICNLIS+RLDSTNF+LWKFQL +ILKAHKLF FIDGS+  P K +++S L SS+S+D A+
Subjt:  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAA

A0A6J1DH48 uncharacterized protein LOC111020396 isoform X29.8e-2068.92Show/hide
Query:  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAA
        I+ D +SPIFLLSNICNLIS+RLDSTNF+LWKFQL +ILKAHKLF FIDGS+  P K +++S L SS+S+D A+
Subjt:  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAA

A0A6J1DIP4 uncharacterized protein LOC111020396 isoform X19.8e-2068.92Show/hide
Query:  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAA
        I+ D +SPIFLLSNICNLIS+RLDSTNF+LWKFQL +ILKAHKLF FIDGS+  P K +++S L SS+S+D A+
Subjt:  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTCTATCGATAAAGACACTCACTCACCTATTTTCTTACTCTCCAACATTTGTAATCTGATCTCTCTACGACTTGATTCAACGAATTTTGTTCTCTGGAAATTCCA
ATTGCAGTCAATTTTGAAAGCCCACAAATTATTTGGGTTCATTGATGGATCTACAGTATGTCCTCCAAAGATGATTTCATCATCTGCTTTGTCTTCCTCAACCTCTGTTG
ATGTTGCAGCTGATACACCTCTTGCTCCTACTGTTTTTCATAGCATCCGACCTCTTTCAGTCGAAGTCTCCTGCAAAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGTCTATCGATAAAGACACTCACTCACCTATTTTCTTACTCTCCAACATTTGTAATCTGATCTCTCTACGACTTGATTCAACGAATTTTGTTCTCTGGAAATTCCA
ATTGCAGTCAATTTTGAAAGCCCACAAATTATTTGGGTTCATTGATGGATCTACAGTATGTCCTCCAAAGATGATTTCATCATCTGCTTTGTCTTCCTCAACCTCTGTTG
ATGTTGCAGCTGATACACCTCTTGCTCCTACTGTTTTTCATAGCATCCGACCTCTTTCAGTCGAAGTCTCCTGCAAAGCTTGA
Protein sequenceShow/hide protein sequence
MTSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAADTPLAPTVFHSIRPLSVEVSCKA