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Lag0017734 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017734
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr5:8028339..8028827
RNA-Seq ExpressionLag0017734
SyntenyLag0017734
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-0536.78Show/hide
Query:  KSGSKKEDKWIGVTYEKLPDFCYGCGWLGHILKEYEMPSESSEVELPYSPWLREPPKIRAKDDSYLGRNMQ---------GRGRGRG
        K G   ++KWI V+YEKLPDFCY CG +GH+++E +   +  E    +  WLR   K +       GR  +         GRG G+G
Subjt:  KSGSKKEDKWIGVTYEKLPDFCYGCGWLGHILKEYEMPSESSEVELPYSPWLREPPKIRAKDDSYLGRNMQ---------GRGRGRG

KAF4349140.1 hypothetical protein F8388_015837 [Cannabis sativa]1.8e-0435.38Show/hide
Query:  KEDKWIGVTYEKLPDFCYGCGWLGHILKE----YEMPSESSEVELPYSPWLREPPKIRAKDDSYL
        +++ W+   YE+LPDFCY CG +GH+  +     E   +  E  LPY PW+      R+  D Y+
Subjt:  KEDKWIGVTYEKLPDFCYGCGWLGHILKE----YEMPSESSEVELPYSPWLREPPKIRAKDDSYL

KAF4362718.1 hypothetical protein G4B88_018336 [Cannabis sativa]1.8e-0439.68Show/hide
Query:  EDKWIGVTYEKLPDFCYGCGWLGHILKE----YEMPSESSEVELPYSPWLREPPKIRAKDDSY
        ++ WI   YE+LPDFCY CG +GH+  +     E   E  E  LPY PW+      R+  D Y
Subjt:  EDKWIGVTYEKLPDFCYGCGWLGHILKE----YEMPSESSEVELPYSPWLREPPKIRAKDDSY

TVU49578.1 hypothetical protein EJB05_00892, partial [Eragrostis curvula]1.8e-0442.25Show/hide
Query:  GSKKEDKWIGVTYEKLPDFCYGCGWLGHILKEYEMPSESSEVELPYSPWLREPPKIRAKDDSYLGRNMQGR
        G+    KW  + YE LPDFCY CG +GHI K Y    E  E E PY   LR  P+ R  D ++ G+    R
Subjt:  GSKKEDKWIGVTYEKLPDFCYGCGWLGHILKEYEMPSESSEVELPYSPWLREPPKIRAKDDSYLGRNMQGR

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]4.6e-0534.51Show/hide
Query:  SKKEDKWIGVTYEKLPDFCYGCGWLGHILKEYEMPSESSEVELP--YSPWLR---------EPPKIRAKDDSYLGRNMQ---GRGRGRGWNPHSDRWRN-
        S  +D W  + YEKLPDFCY CG +GH  +E E  S+      P  Y  WLR          P +         GR  Q   GRG    W    + WR+ 
Subjt:  SKKEDKWIGVTYEKLPDFCYGCGWLGHILKEYEMPSESSEVELP--YSPWLR---------EPPKIRAKDDSYLGRNMQ---GRGRGRGWNPHSDRWRN-

Query:  DDPEGE-----EEGMDAILVVPREPTPAAYVPTTAQATVSDQ
        D PE       EEG+D    VP E +  A   T  QA ++ Q
Subjt:  DDPEGE-----EEGMDAILVVPREPTPAAYVPTTAQATVSDQ

TrEMBL top hitse value%identityAlignment
A0A5D3C0K2 Reverse transcriptase1.0e-0536.78Show/hide
Query:  KSGSKKEDKWIGVTYEKLPDFCYGCGWLGHILKEYEMPSESSEVELPYSPWLREPPKIRAKDDSYLGRNMQ---------GRGRGRG
        K G   ++KWI V+YEKLPDFCY CG +GH+++E +   +  E    +  WLR   K +       GR  +         GRG G+G
Subjt:  KSGSKKEDKWIGVTYEKLPDFCYGCGWLGHILKEYEMPSESSEVELPYSPWLREPPKIRAKDDSYLGRNMQ---------GRGRGRG

A0A6J1D765 uncharacterized protein LOC1110179022.2e-0534.51Show/hide
Query:  SKKEDKWIGVTYEKLPDFCYGCGWLGHILKEYEMPSESSEVELP--YSPWLR---------EPPKIRAKDDSYLGRNMQ---GRGRGRGWNPHSDRWRN-
        S  +D W  + YEKLPDFCY CG +GH  +E E  S+      P  Y  WLR          P +         GR  Q   GRG    W    + WR+ 
Subjt:  SKKEDKWIGVTYEKLPDFCYGCGWLGHILKEYEMPSESSEVELP--YSPWLR---------EPPKIRAKDDSYLGRNMQ---GRGRGRGWNPHSDRWRN-

Query:  DDPEGE-----EEGMDAILVVPREPTPAAYVPTTAQATVSDQ
        D PE       EEG+D    VP E +  A   T  QA ++ Q
Subjt:  DDPEGE-----EEGMDAILVVPREPTPAAYVPTTAQATVSDQ

A0A803NU77 Uncharacterized protein1.0e-0539.06Show/hide
Query:  EDKWIGVTYEKLPDFCYGCGWLGHILKE----YEMPSESSEVELPYSPWLREPPKIRAKDDSYL
        ++ WI   YE+LPDFCY CG +GH+  +     E   +  E  LPY PW+   P  R+  D Y+
Subjt:  EDKWIGVTYEKLPDFCYGCGWLGHILKE----YEMPSESSEVELPYSPWLREPPKIRAKDDSYL

A0A803PC16 Uncharacterized protein2.9e-0536.51Show/hide
Query:  EDKWIGVTYEKLPDFCYGCGWLGHILKE----YEMPSESSEVELPYSPWLREPPKIRAKDDSY
        ++ W+   YE+LPDFCY CG +GH+  +     E   +  + +LPY PW+   P  R+  D Y
Subjt:  EDKWIGVTYEKLPDFCYGCGWLGHILKE----YEMPSESSEVELPYSPWLREPPKIRAKDDSY

A0A803PM29 Uncharacterized protein1.0e-0535.94Show/hide
Query:  KEDKWIGVTYEKLPDFCYGCGWLGHILKE----YEMPSESSEVELPYSPWLREPPKIRAKDDSY
        K++ W+   YE+LP+FCY CG +GH+  +     E   +  E +LPY PW+   P +++  D Y
Subjt:  KEDKWIGVTYEKLPDFCYGCGWLGHILKE----YEMPSESSEVELPYSPWLREPPKIRAKDDSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCTGGATCCAAGAAGGAGGATAAATGGATTGGGGTTACGTACGAGAAATTGCCAGATTTTTGCTATGGTTGTGGGTGGCTGGGTCACATCCTGAAAGAATATGA
GATGCCATCAGAGTCAAGTGAGGTTGAGCTCCCCTATAGTCCTTGGCTTCGTGAACCTCCAAAGATTAGAGCCAAAGATGATTCTTATTTGGGGAGGAATATGCAGGGAC
GAGGAAGAGGGAGAGGGTGGAACCCGCACAGTGATCGGTGGAGGAACGACGATCCTGAGGGTGAGGAAGAGGGGATGGATGCAATTCTGGTGGTTCCAAGGGAACCAACA
CCGGCGGCGTATGTACCTACGACAGCTCAGGCGACAGTTTCAGACCAGACGGAATTGATGGACGGAACGGAGGCTCCAACGGTGGAAAATCCAAACTTGGTAACCAATTC
GAGGAAGGAAAAACCTACCATGGATGGGGGCGGGAATCACGAAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATCTGGATCCAAGAAGGAGGATAAATGGATTGGGGTTACGTACGAGAAATTGCCAGATTTTTGCTATGGTTGTGGGTGGCTGGGTCACATCCTGAAAGAATATGA
GATGCCATCAGAGTCAAGTGAGGTTGAGCTCCCCTATAGTCCTTGGCTTCGTGAACCTCCAAAGATTAGAGCCAAAGATGATTCTTATTTGGGGAGGAATATGCAGGGAC
GAGGAAGAGGGAGAGGGTGGAACCCGCACAGTGATCGGTGGAGGAACGACGATCCTGAGGGTGAGGAAGAGGGGATGGATGCAATTCTGGTGGTTCCAAGGGAACCAACA
CCGGCGGCGTATGTACCTACGACAGCTCAGGCGACAGTTTCAGACCAGACGGAATTGATGGACGGAACGGAGGCTCCAACGGTGGAAAATCCAAACTTGGTAACCAATTC
GAGGAAGGAAAAACCTACCATGGATGGGGGCGGGAATCACGAAAATTGA
Protein sequenceShow/hide protein sequence
MKSGSKKEDKWIGVTYEKLPDFCYGCGWLGHILKEYEMPSESSEVELPYSPWLREPPKIRAKDDSYLGRNMQGRGRGRGWNPHSDRWRNDDPEGEEEGMDAILVVPREPT
PAAYVPTTAQATVSDQTELMDGTEAPTVENPNLVTNSRKEKPTMDGGGNHEN