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Lag0017763 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017763
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr5:8384170..8384538
RNA-Seq ExpressionLag0017763
SyntenyLag0017763
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKU84201.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum]8.3e-1542.31Show/hide
Query:  TSAQLSSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNNVFS
        T A L+        WF+DSGA+  +TSD+S +Q   PY GN QV +GNG  +P+ + G   LP+  P    +LK++LH PH+SHNLIS+ +L  DN  + 
Subjt:  TSAQLSSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNNVFS

Query:  LVGN
        +  N
Subjt:  LVGN
RVW60941.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]6.3e-1550Show/hide
Query:  SSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNN
        +S S  DE+W++DSGA+H +T ++ +L  TSPY G  +V IGNG  + + N+GS  L S    HS +LK V H P IS NLIS+AK C DNN
Subjt:  SSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNN
RVX03327.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]2.2e-1550Show/hide
Query:  SSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNN
        +S++ +DE+W++DSGA+H +T ++ +L  TSPY G  +V IGNG  I + N+GS  L S    HS +LK V H P IS NLIS+AK C DNN
Subjt:  SSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNN
RVX09873.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]2.8e-1549.45Show/hide
Query:  SSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNN
        S+S +DE+W++DSGA+H +T ++ +L  TSPY G  +V IGNG  + + N+GS  L S    HS +L+ V H P IS NLIS+AK C DNN
Subjt:  SSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNN
RVX09940.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]4.8e-1546.6Show/hide
Query:  NPSTTDTSAQLSSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCF
        N +   T    SS+S  DE+W++DSGA+H +T ++ +L  TSPY G  +V IGNG  + + N+GS  L S    HS +LK V H P I  NLIS+AK C 
Subjt:  NPSTTDTSAQLSSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCF

Query:  DNN
        DNN
Subjt:  DNN
TrEMBL top hitse value%identityAlignment
A0A2I0X8I8 Retrovirus-related Pol polyprotein from transposon TNT 1-944.0e-1542.31Show/hide
Query:  TSAQLSSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNNVFS
        T A L+        WF+DSGA+  +TSD+S +Q   PY GN QV +GNG  +P+ + G   LP+  P    +LK++LH PH+SHNLIS+ +L  DN  + 
Subjt:  TSAQLSSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNNVFS

Query:  LVGN
        +  N
Subjt:  LVGN
A0A438FLT9 Retrovirus-related Pol polyprotein from transposon RE13.1e-1550Show/hide
Query:  SSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNN
        +S S  DE+W++DSGA+H +T ++ +L  TSPY G  +V IGNG  + + N+GS  L S    HS +LK V H P IS NLIS+AK C DNN
Subjt:  SSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNN
A0A438J301 Retrovirus-related Pol polyprotein from transposon RE21.1e-1550Show/hide
Query:  SSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNN
        +S++ +DE+W++DSGA+H +T ++ +L  TSPY G  +V IGNG  I + N+GS  L S    HS +LK V H P IS NLIS+AK C DNN
Subjt:  SSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNN
A0A438JLN8 Retrovirus-related Pol polyprotein from transposon RE11.4e-1549.45Show/hide
Query:  SSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNN
        S+S +DE+W++DSGA+H +T ++ +L  TSPY G  +V IGNG  + + N+GS  L S    HS +L+ V H P IS NLIS+AK C DNN
Subjt:  SSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNN
A0A438JLU8 Retrovirus-related Pol polyprotein from transposon RE22.3e-1546.6Show/hide
Query:  NPSTTDTSAQLSSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCF
        N +   T    SS+S  DE+W++DSGA+H +T ++ +L  TSPY G  +V IGNG  + + N+GS  L S    HS +LK V H P I  NLIS+AK C 
Subjt:  NPSTTDTSAQLSSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCF

Query:  DNN
        DNN
Subjt:  DNN
SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.2e-1138.68Show/hide
Query:  PFNPSTTDTSAQLSSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKL
        PF P     +  L  S +    W +DSGATH +TSD ++L    PY G   V++ +G+ IP+ + GSTSL  S     + L  +L+ P+I  NLIS+ +L
Subjt:  PFNPSTTDTSAQLSSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKL

Query:  CFDNNV
        C  N V
Subjt:  CFDNNV
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE24.7e-1340.57Show/hide
Query:  PFNPSTTDTSAQLSSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKL
        PF P     +  ++S  + +  W +DSGATH +TSD ++L    PY G   V+I +G+ IP+ + GS SLP+S    S+ L  VL+ P+I  NLIS+ +L
Subjt:  PFNPSTTDTSAQLSSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKL

Query:  CFDNNV
        C  N V
Subjt:  CFDNNV
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCCGTTTAACCCTTCTACTACAGATACTTCGGCTCAACTTAGCTCTTCCTCTCATTTGGATGAAGCTTGGTTCATGGATTCTGGGGCTACTCATGACATGACCTC
TGATGTTAGCCATCTTCAGCAGACCTCTCCTTACTTTGGCAATAAGCAAGTGGTAATCGGCAATGGTACGCCTATCCCTGTCCTCAATCTTGGTTCTACTTCCTTACCTT
CTTCTTTGCCTTTTCATTCTGTCAAACTTAAATATGTGTTACATGCTCCACATATTTCACATAATCTTATTAGTATTGCCAAACTTTGTTTTGATAACAATGTGTTTTCC
CTTGTTGGTAACATGTCTCCTCCAAAACGTATCTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCCGTTTAACCCTTCTACTACAGATACTTCGGCTCAACTTAGCTCTTCCTCTCATTTGGATGAAGCTTGGTTCATGGATTCTGGGGCTACTCATGACATGACCTC
TGATGTTAGCCATCTTCAGCAGACCTCTCCTTACTTTGGCAATAAGCAAGTGGTAATCGGCAATGGTACGCCTATCCCTGTCCTCAATCTTGGTTCTACTTCCTTACCTT
CTTCTTTGCCTTTTCATTCTGTCAAACTTAAATATGTGTTACATGCTCCACATATTTCACATAATCTTATTAGTATTGCCAAACTTTGTTTTGATAACAATGTGTTTTCC
CTTGTTGGTAACATGTCTCCTCCAAAACGTATCTCTTAA
Protein sequenceShow/hide protein sequence
MPPFNPSTTDTSAQLSSSSHLDEAWFMDSGATHDMTSDVSHLQQTSPYFGNKQVVIGNGTPIPVLNLGSTSLPSSLPFHSVKLKYVLHAPHISHNLISIAKLCFDNNVFS
LVGNMSPPKRIS