; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017774 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017774
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr5:8566290..8567496
RNA-Seq ExpressionLag0017774
SyntenyLag0017774
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]8.3e-3446.97Show/hide
Query:  RAFFFTLTGSAKHWFERLKRRSISSFKELARAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSI
        R F FTLTGS + WF++LKR+SISSFKELARAF+ QF G   + +P   LLT+KQ+  ESL+DY+ RFN E LQVEG ++   L+   +G++DE+L+ S 
Subjt:  RAFFFTLTGSAKHWFERLKRRSISSFKELARAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSI

Query:  GKSQPRTYAELVSRAQKYMSTEELLKSKRSGQEHKRHSSVDQDRKKDKRQ----RTDDNGRGRADHDHGRGRAHPFGKFEKYTSTVVPQEKVLMEIRN
        GK    T++E  SRAQ YMS  EL+ SKR  +      +  + R  +KR        D+G+GR        +  P  KFEKYT T VP E+VLMEI++
Subjt:  GKSQPRTYAELVSRAQKYMSTEELLKSKRSGQEHKRHSSVDQDRKKDKRQ----RTDDNGRGRADHDHGRGRAHPFGKFEKYTSTVVPQEKVLMEIRN

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]8.3e-3445.32Show/hide
Query:  IEEVMKAPRCPKSSRCNQVRAFFFTLTGSAKHWFERLKRRSISSFKELARAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEG
        I ++ +A RC         R F FTLTGSA++WF +LKR SISSFKELA AF+ QF+G R + KP   LLT+KQ+  ESL++Y+ RFN+E LQVEG ++ 
Subjt:  IEEVMKAPRCPKSSRCNQVRAFFFTLTGSAKHWFERLKRRSISSFKELARAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEG

Query:  ATLVAITAGLEDERLLNSIGKSQPRTYAELVSRAQKYMSTEELLKSKRSGQEHKRHSSVDQDRKKDKRQRTDDNGRGRADHDHGR-GRAHPFGKFEKYTS
          L+A  +G++DERL+ S GK  P T+ E +SRAQKYMS  EL+   R  +  + + S  ++R+ +KR R+      R+D  HGR  +  P  KFEK   
Subjt:  ATLVAITAGLEDERLLNSIGKSQPRTYAELVSRAQKYMSTEELLKSKRSGQEHKRHSSVDQDRKKDKRQRTDDNGRGRADHDHGR-GRAHPFGKFEKYTS

Query:  TVV
        +++
Subjt:  TVV

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]7.7e-4043.35Show/hide
Query:  DLEELVDQVDPPFIEEVMKAPRCPK------------------------------SSRCNQVRAFFFTLTGSAKHWFERLKRRSISSFKELARAFLAQFM
        DLEEL+DQ D PF EE+M+    PK                               S   + R F  TL GSA+ WF +LKR SISSFK LARAF+ QF+
Subjt:  DLEELVDQVDPPFIEEVMKAPRCPK------------------------------SSRCNQVRAFFFTLTGSAKHWFERLKRRSISSFKELARAFLAQFM

Query:  GAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAELVSRAQKYMSTEELLKSKRSGQEHKRHS
        G R + +P   LLT+KQ+  ESLRDY+ RFN+E LQVEG ++  +L+A  +G+ DE L  S GK  P T++E +SRAQ+YMS  E   SKR         
Subjt:  GAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAELVSRAQKYMSTEELLKSKRSGQEHKRHS

Query:  SVDQDRKKDKRQRTDDNGRG-RADHDHGRGRAHPFGKFEKYTSTVVPQEKVLMEIRNTGLLKF
          D  R   KR+R+ D  +G R +      +  P  KFEKYT T VP E+VLMEI++  LLK+
Subjt:  SVDQDRKKDKRQRTDDNGRG-RADHDHGRGRAHPFGKFEKYTSTVVPQEKVLMEIRNTGLLKF

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]1.4e-2837.97Show/hide
Query:  KNNLPLKTELLNALKELGNPQ----RDLQESKDLGDPDLEELVDQVDPPFIEEVMKAPRCPK------------------------------SSRCNQVR
        +N+ P+    LN  K +  P+    R  Q+ K     DLEEL+ Q D PF EE+M+    PK                               S   + R
Subjt:  KNNLPLKTELLNALKELGNPQ----RDLQESKDLGDPDLEELVDQVDPPFIEEVMKAPRCPK------------------------------SSRCNQVR

Query:  AFFFTLTGSAKHWFERLKRRSISSFKELARAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSIG
         F  TL GSA+ WF +LKR SISSFK LARAF+ QF+G R + +P   LLT+KQ+  ESL DY+ RFN+E LQ+EG ++  +L+A  +G+ DE L  S  
Subjt:  AFFFTLTGSAKHWFERLKRRSISSFKELARAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSIG

Query:  KSQPRTYAELVSRAQKYMSTEELLKSKRSGQEHKRHSSVDQDRKKDKRQRTDDNGRGRADHDHGRG
        K  P T++E +SRAQ+YMS  E   SKR           D  R   KR+R+ D  +G       RG
Subjt:  KSQPRTYAELVSRAQKYMSTEELLKSKRSGQEHKRHSSVDQDRKKDKRQRTDDNGRGRADHDHGRG

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]2.3e-2846.2Show/hide
Query:  LKRRSISSFKELARAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAELVSRAQK
        +KR SISSFK LARAF+ QF+G R + +P   LLT+KQ+  ESL DY+ RFN E LQ+E  ++  +L+A  +G+ DE L  S GK  P T++E +SRAQ+
Subjt:  LKRRSISSFKELARAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAELVSRAQK

Query:  YMSTEELLKSKRSGQEHKRHSSVDQDRKKDKRQRTDDNGRG-RADHDHGRGRAHPFGKFEKYTSTVVPQEKVLMEIRNTGLLKF
        YMS  E   SKR           D  R   KR+R+ D  +G R +      +  P  KFEKYT T VP E+VLMEI++  LLK+
Subjt:  YMSTEELLKSKRSGQEHKRHSSVDQDRKKDKRQRTDDNGRG-RADHDHGRGRAHPFGKFEKYTSTVVPQEKVLMEIRNTGLLKF

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166194.0e-3446.97Show/hide
Query:  RAFFFTLTGSAKHWFERLKRRSISSFKELARAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSI
        R F FTLTGS + WF++LKR+SISSFKELARAF+ QF G   + +P   LLT+KQ+  ESL+DY+ RFN E LQVEG ++   L+   +G++DE+L+ S 
Subjt:  RAFFFTLTGSAKHWFERLKRRSISSFKELARAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSI

Query:  GKSQPRTYAELVSRAQKYMSTEELLKSKRSGQEHKRHSSVDQDRKKDKRQ----RTDDNGRGRADHDHGRGRAHPFGKFEKYTSTVVPQEKVLMEIRN
        GK    T++E  SRAQ YMS  EL+ SKR  +      +  + R  +KR        D+G+GR        +  P  KFEKYT T VP E+VLMEI++
Subjt:  GKSQPRTYAELVSRAQKYMSTEELLKSKRSGQEHKRHSSVDQDRKKDKRQ----RTDDNGRGRADHDHGRGRAHPFGKFEKYTSTVVPQEKVLMEIRN

A0A6J1DWY0 uncharacterized protein LOC1110252933.8e-4043.35Show/hide
Query:  DLEELVDQVDPPFIEEVMKAPRCPK------------------------------SSRCNQVRAFFFTLTGSAKHWFERLKRRSISSFKELARAFLAQFM
        DLEEL+DQ D PF EE+M+    PK                               S   + R F  TL GSA+ WF +LKR SISSFK LARAF+ QF+
Subjt:  DLEELVDQVDPPFIEEVMKAPRCPK------------------------------SSRCNQVRAFFFTLTGSAKHWFERLKRRSISSFKELARAFLAQFM

Query:  GAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAELVSRAQKYMSTEELLKSKRSGQEHKRHS
        G R + +P   LLT+KQ+  ESLRDY+ RFN+E LQVEG ++  +L+A  +G+ DE L  S GK  P T++E +SRAQ+YMS  E   SKR         
Subjt:  GAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAELVSRAQKYMSTEELLKSKRSGQEHKRHS

Query:  SVDQDRKKDKRQRTDDNGRG-RADHDHGRGRAHPFGKFEKYTSTVVPQEKVLMEIRNTGLLKF
          D  R   KR+R+ D  +G R +      +  P  KFEKYT T VP E+VLMEI++  LLK+
Subjt:  SVDQDRKKDKRQRTDDNGRG-RADHDHGRGRAHPFGKFEKYTSTVVPQEKVLMEIRNTGLLKF

A0A6J1DYL6 uncharacterized protein LOC1110257851.1e-2846.2Show/hide
Query:  LKRRSISSFKELARAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAELVSRAQK
        +KR SISSFK LARAF+ QF+G R + +P   LLT+KQ+  ESL DY+ RFN E LQ+E  ++  +L+A  +G+ DE L  S GK  P T++E +SRAQ+
Subjt:  LKRRSISSFKELARAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAELVSRAQK

Query:  YMSTEELLKSKRSGQEHKRHSSVDQDRKKDKRQRTDDNGRG-RADHDHGRGRAHPFGKFEKYTSTVVPQEKVLMEIRNTGLLKF
        YMS  E   SKR           D  R   KR+R+ D  +G R +      +  P  KFEKYT T VP E+VLMEI++  LLK+
Subjt:  YMSTEELLKSKRSGQEHKRHSSVDQDRKKDKRQRTDDNGRG-RADHDHGRGRAHPFGKFEKYTSTVVPQEKVLMEIRNTGLLKF

A0A6J1DZ49 uncharacterized protein LOC1110248514.0e-3445.32Show/hide
Query:  IEEVMKAPRCPKSSRCNQVRAFFFTLTGSAKHWFERLKRRSISSFKELARAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEG
        I ++ +A RC         R F FTLTGSA++WF +LKR SISSFKELA AF+ QF+G R + KP   LLT+KQ+  ESL++Y+ RFN+E LQVEG ++ 
Subjt:  IEEVMKAPRCPKSSRCNQVRAFFFTLTGSAKHWFERLKRRSISSFKELARAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEG

Query:  ATLVAITAGLEDERLLNSIGKSQPRTYAELVSRAQKYMSTEELLKSKRSGQEHKRHSSVDQDRKKDKRQRTDDNGRGRADHDHGR-GRAHPFGKFEKYTS
          L+A  +G++DERL+ S GK  P T+ E +SRAQKYMS  EL+   R  +  + + S  ++R+ +KR R+      R+D  HGR  +  P  KFEK   
Subjt:  ATLVAITAGLEDERLLNSIGKSQPRTYAELVSRAQKYMSTEELLKSKRSGQEHKRHSSVDQDRKKDKRQRTDDNGRGRADHDHGR-GRAHPFGKFEKYTS

Query:  TVV
        +++
Subjt:  TVV

A0A6J1E1E7 uncharacterized protein LOC1110255486.6e-2937.97Show/hide
Query:  KNNLPLKTELLNALKELGNPQ----RDLQESKDLGDPDLEELVDQVDPPFIEEVMKAPRCPK------------------------------SSRCNQVR
        +N+ P+    LN  K +  P+    R  Q+ K     DLEEL+ Q D PF EE+M+    PK                               S   + R
Subjt:  KNNLPLKTELLNALKELGNPQ----RDLQESKDLGDPDLEELVDQVDPPFIEEVMKAPRCPK------------------------------SSRCNQVR

Query:  AFFFTLTGSAKHWFERLKRRSISSFKELARAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSIG
         F  TL GSA+ WF +LKR SISSFK LARAF+ QF+G R + +P   LLT+KQ+  ESL DY+ RFN+E LQ+EG ++  +L+A  +G+ DE L  S  
Subjt:  AFFFTLTGSAKHWFERLKRRSISSFKELARAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSIG

Query:  KSQPRTYAELVSRAQKYMSTEELLKSKRSGQEHKRHSSVDQDRKKDKRQRTDDNGRGRADHDHGRG
        K  P T++E +SRAQ+YMS  E   SKR           D  R   KR+R+ D  +G       RG
Subjt:  KSQPRTYAELVSRAQKYMSTEELLKSKRSGQEHKRHSSVDQDRKKDKRQRTDDNGRGRADHDHGRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCACACTGCAGAATCAGGGACGAGATCGAAGGGAAAGAAGACTGACAGCATGACCAGCAAGATCAGGGGGCTCAAACCTACTGATCGTACAATTTTGAGGAGCCC
AGAGTCAAGCACACTTAAGGGACGTGACTACCTAGTTTCTACCCCAAGCTACGGTCATACTAAGACCGACCTGAGGAATCTGATCGAGGGGAAACGCAGAAGTGCCAAAA
CTGTCGAATCCAAGGCCAGAGCTGTTGAAGCTGAAGCCAGGGCTGCCGAGGCCGAGGCCAAGGCTAGGTTGGTCGAGGCCGAGGCCAAGAAGAACAACCTCCCTTTGAAG
ACTGAGCTTCTGAACGCACTAAAGGAGCTCGGAAATCCACAGAGAGACCTGCAGGAGTCAAAGGACCTTGGAGACCCAGACTTGGAAGAACTAGTCGACCAAGTCGACCC
GCCCTTCATAGAAGAAGTCATGAAAGCGCCGAGGTGCCCCAAAAGTTCAAGATGCAATCAGGTGCGTGCATTCTTTTTCACTCTGACAGGATCAGCCAAGCATTGGTTTG
AAAGATTGAAGAGAAGATCCATCAGCTCTTTCAAGGAATTAGCTCGAGCGTTCCTAGCACAGTTTATGGGAGCCAGAGAACAACGCAAGCCTCACATCAACCTGTTGACA
GTCAAACAGCAGCCAGGTGAGAGCTTGCGTGATTACATAACGCGTTTTAATGACGAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAACCCTAGTAGCCATCACAGC
CGGATTGGAAGACGAAAGACTGCTCAATTCGATAGGTAAGAGCCAACCTCGAACCTATGCAGAACTCGTCTCCCGAGCACAGAAGTATATGAGCACAGAGGAATTACTGA
AATCAAAGAGGTCAGGACAAGAGCACAAGAGACATTCTTCAGTCGATCAGGACAGAAAGAAAGATAAGAGACAGCGGACAGACGATAATGGTCGAGGCCGAGCCGACCAT
GACCATGGCCGAGGCCGAGCACATCCCTTTGGTAAGTTTGAGAAATATACATCAACTGTTGTTCCACAGGAGAAAGTTTTGATGGAGATCCGAAATACAGGACTCCTTAA
ATTCTCGGGAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCACACTGCAGAATCAGGGACGAGATCGAAGGGAAAGAAGACTGACAGCATGACCAGCAAGATCAGGGGGCTCAAACCTACTGATCGTACAATTTTGAGGAGCCC
AGAGTCAAGCACACTTAAGGGACGTGACTACCTAGTTTCTACCCCAAGCTACGGTCATACTAAGACCGACCTGAGGAATCTGATCGAGGGGAAACGCAGAAGTGCCAAAA
CTGTCGAATCCAAGGCCAGAGCTGTTGAAGCTGAAGCCAGGGCTGCCGAGGCCGAGGCCAAGGCTAGGTTGGTCGAGGCCGAGGCCAAGAAGAACAACCTCCCTTTGAAG
ACTGAGCTTCTGAACGCACTAAAGGAGCTCGGAAATCCACAGAGAGACCTGCAGGAGTCAAAGGACCTTGGAGACCCAGACTTGGAAGAACTAGTCGACCAAGTCGACCC
GCCCTTCATAGAAGAAGTCATGAAAGCGCCGAGGTGCCCCAAAAGTTCAAGATGCAATCAGGTGCGTGCATTCTTTTTCACTCTGACAGGATCAGCCAAGCATTGGTTTG
AAAGATTGAAGAGAAGATCCATCAGCTCTTTCAAGGAATTAGCTCGAGCGTTCCTAGCACAGTTTATGGGAGCCAGAGAACAACGCAAGCCTCACATCAACCTGTTGACA
GTCAAACAGCAGCCAGGTGAGAGCTTGCGTGATTACATAACGCGTTTTAATGACGAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAACCCTAGTAGCCATCACAGC
CGGATTGGAAGACGAAAGACTGCTCAATTCGATAGGTAAGAGCCAACCTCGAACCTATGCAGAACTCGTCTCCCGAGCACAGAAGTATATGAGCACAGAGGAATTACTGA
AATCAAAGAGGTCAGGACAAGAGCACAAGAGACATTCTTCAGTCGATCAGGACAGAAAGAAAGATAAGAGACAGCGGACAGACGATAATGGTCGAGGCCGAGCCGACCAT
GACCATGGCCGAGGCCGAGCACATCCCTTTGGTAAGTTTGAGAAATATACATCAACTGTTGTTCCACAGGAGAAAGTTTTGATGGAGATCCGAAATACAGGACTCCTTAA
ATTCTCGGGAGGATGA
Protein sequenceShow/hide protein sequence
MEHTAESGTRSKGKKTDSMTSKIRGLKPTDRTILRSPESSTLKGRDYLVSTPSYGHTKTDLRNLIEGKRRSAKTVESKARAVEAEARAAEAEAKARLVEAEAKKNNLPLK
TELLNALKELGNPQRDLQESKDLGDPDLEELVDQVDPPFIEEVMKAPRCPKSSRCNQVRAFFFTLTGSAKHWFERLKRRSISSFKELARAFLAQFMGAREQRKPHINLLT
VKQQPGESLRDYITRFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAELVSRAQKYMSTEELLKSKRSGQEHKRHSSVDQDRKKDKRQRTDDNGRGRADH
DHGRGRAHPFGKFEKYTSTVVPQEKVLMEIRNTGLLKFSGG