CuGenDBv2

Gene ID	Lag0017779
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotran_gag_3 domain-containing protein
Genome location	chr5:8616546..8617319
RNA-Seq Expression	Lag0017779
Synteny	Lag0017779
Gene Ontology terms	GO:0016491 - oxidoreductase activity (molecular function) GO:0097159 - organic cyclic compound binding (molecular function) GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA8516701.1 hypothetical protein F0562_016793 [Nyssa sinensis]

8.0e-36

46.54

Show/hide

Query:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF
        H+ALDCYHR  +++ G+ P  QL A++A     S+  P+      W +D+G T H+T+DLAN+    EY G+ N+T+ +GQ L ++H+G +S + + H+F
Subjt:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF

Query:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL
         L+N+LCVP +++NLLSVHQFC DN CRF+FD+  F IQD+   Q  + GPS +GLYPL
Subjt:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL

KAA8519786.1 hypothetical protein F0562_014124 [Nyssa sinensis]

2.8e-36

46.54

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Query:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF
        H+ALDCYHR  +++ G+ P  QL A++A     S+  P+      W +D+G T H+T+DLAN+    EY G+ N+T+ +GQ L ++H+G +S + + H+F
Subjt:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF

Query:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL
         L+N+LCVP +++NLLSVHQFC DN CRF+FD+  F IQD+   Q  + GPS +GLYPL
Subjt:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL

KAA8521875.1 hypothetical protein F0562_012811 [Nyssa sinensis]

8.0e-36

45.91

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Query:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF
        H+ALDCYHR  +++ G+ P  QL A++A     S+  P+      W +D+G T H+T+DLAN+    EY G+ N+T+ +GQ L ++H+G +S + + H+F
Subjt:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF

Query:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL
        +L+N+LCVP +++NLLSVHQFC DN CRF+FD+  F IQD+   Q  + GP  +GLYPL
Subjt:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL

KAA8524269.1 hypothetical protein F0562_010692 [Nyssa sinensis]

4.7e-36

46.54

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Query:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF
        H+ALDCYHR  +++ G+ P  QL A++A     S+  P+      W +D+G T H+T+DLAN+    EY G+ N+T+ +GQ L ++H+G +S + + H+F
Subjt:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF

Query:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL
         L+N+LCVP +++NLLSVHQFC DN CRF+FD+  F IQD+   Q  + GPS +GLYPL
Subjt:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL

KAA8535282.1 hypothetical protein F0562_030285 [Nyssa sinensis]

4.7e-36

46.54

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Query:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF
        H+ALDCYHR  +++ G+ P  QL A++A     S+  P+      W +D+G T H+T+DLAN+    EY G+ N+T+ +GQ L ++H+G +S + + H+F
Subjt:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF

Query:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL
         L+N+LCVP +++NLLSVHQFC DN CRF+FD+  F IQD+   Q  + GPS +GLYPL
Subjt:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL

TrEMBL top hits

e value

%identity

Alignment

A0A5J4ZHB6 Uncharacterized protein

3.9e-36

46.54

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Query:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF
        H+ALDCYHR  +++ G+ P  QL A++A     S+  P+      W +D+G T H+T+DLAN+    EY G+ N+T+ +GQ L ++H+G +S + + H+F
Subjt:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF

Query:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL
         L+N+LCVP +++NLLSVHQFC DN CRF+FD+  F IQD+   Q  + GPS +GLYPL
Subjt:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL

A0A5J4ZPW7 Retrotran_gag_3 domain-containing protein

1.3e-36

46.54

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Query:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF
        H+ALDCYHR  +++ G+ P  QL A++A     S+  P+      W +D+G T H+T+DLAN+    EY G+ N+T+ +GQ L ++H+G +S + + H+F
Subjt:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF

Query:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL
         L+N+LCVP +++NLLSVHQFC DN CRF+FD+  F IQD+   Q  + GPS +GLYPL
Subjt:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL

A0A5J4ZT09 Flavin-containing monooxygenase

3.9e-36

45.91

Show/hide

Query:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF
        H+ALDCYHR  +++ G+ P  QL A++A     S+  P+      W +D+G T H+T+DLAN+    EY G+ N+T+ +GQ L ++H+G +S + + H+F
Subjt:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF

Query:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL
        +L+N+LCVP +++NLLSVHQFC DN CRF+FD+  F IQD+   Q  + GP  +GLYPL
Subjt:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL

A0A5J5A1U7 Integrase catalytic domain-containing protein

2.3e-36

46.54

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Query:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF
        H+ALDCYHR  +++ G+ P  QL A++A     S+  P+      W +D+G T H+T+DLAN+    EY G+ N+T+ +GQ L ++H+G +S + + H+F
Subjt:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF

Query:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL
         L+N+LCVP +++NLLSVHQFC DN CRF+FD+  F IQD+   Q  + GPS +GLYPL
Subjt:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL

A0A5J5B049 Retrotran_gag_3 domain-containing protein

2.3e-36

46.54

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Query:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF
        H+ALDCYHR  +++ G+ P  QL A++A     S+  P+      W +D+G T H+T+DLAN+    EY G+ N+T+ +GQ L ++H+G +S + + H+F
Subjt:  HNALDCYHRYGYNFLGRLPPTQLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSF

Query:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL
         L+N+LCVP +++NLLSVHQFC DN CRF+FD+  F IQD+   Q  + GPS +GLYPL
Subjt:  LLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTIQDRQMGQPFYHGPSVNGLYPL

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

8.7e-17

40.34

Show/hide

Query:  STASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSFLLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTI
        S  SS  WL DSG T H+TSD  N+++   Y G  +V V  G T+ ++HTG TS +T S    L N+L VP I  NL+SV++ C  N     F  +SF +
Subjt:  STASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSFLLSNLLCVPRISSNLLSVHQFCVDNDCRFVFDASSFTI

Query:  QDRQMGQPFYHGPSVNGLY
        +D   G P   G + + LY
Subjt:  QDRQMGQPFYHGPSVNGLY

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.6e-15

38.46

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Query:  ANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSFLLSNLLCVPRISSNLLSVHQFCVDNDC
        ANL + S   P  A++  WL DSG T H+TSD  N++    Y G  +V +  G T+ +THTG  S  T S S  L+ +L VP I  NL+SV++ C  N  
Subjt:  ANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSFLLSNLLCVPRISSNLLSVHQFCVDNDC

Query:  RFVFDASSFTIQDRQMGQPFYHGPSVNGLY
           F  +SF ++D   G P   G + + LY
Subjt:  RFVFDASSFTIQDRQMGQPFYHGPSVNGLY

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTTGTGAAGGATTGGAATTTCCAATTCCGTTACAGCAGAAGCAATTGGACCGTTCGTAAATTAATTTTGTTCTACAAAAAATACCAATACATTGGCAAAAGGTTAAG
TGGTGAGAAACATACCTCCGTTGACGACTTTGAATACTTCAACGGACACCACCACGAGTTCTTCACCTCAACAACCTTCCTCTCTTGGCCGTGGAAATTCTACATCTCCC
ACTGTCAATTCACCGAAGGTTGTCTGCCAGATTTGTCAACCTTCGACCACAATGCCTTGGATTGCTATCACCGCTATGGATATAACTTTCTTGGACGCCTTCCTCCTACT
CAACTTGTCGCCCTTGCTGCTAATTTGGGCCTTCAGTCAAACACAGTGCCCTCTACCGCAAGCTCACAAGTTTGGCTCTCTGACTCAGGGTGCACTGCACATCTCACCTC
TGATCTTGCCAATATGACAATCTCCTCTGAGTACAATGGTGAAGCAAACGTTACTGTTGGCAGTGGTCAAACATTATCGGTTACTCACACAGGTTGTACTTCTTTCAACA
CTGATTCTCATTCCTTTCTTTTGTCCAATCTTCTGTGTGTTCCACGTATATCCTCTAATCTTCTCTCCGTGCATCAATTCTGTGTTGATAATGATTGTCGCTTTGTGTTT
GATGCCTCTTCTTTCACTATTCAGGACAGGCAAATGGGTCAGCCATTCTACCATGGGCCTAGTGTTAACGGTCTCTATCCATTAATCTACCTAGCCTTGCCCATCTCTTC
CTAG

mRNA sequence

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Protein sequence

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MFVKDWNFQFRYSRSNWTVRKLILFYKKYQYIGKRLSGEKHTSVDDFEYFNGHHHEFFTSTTFLSWPWKFYISHCQFTEGCLPDLSTFDHNALDCYHRYGYNFLGRLPPT
QLVALAANLGLQSNTVPSTASSQVWLSDSGCTAHLTSDLANMTISSEYNGEANVTVGSGQTLSVTHTGCTSFNTDSHSFLLSNLLCVPRISSNLLSVHQFCVDNDCRFVF
DASSFTIQDRQMGQPFYHGPSVNGLYPLIYLALPISS

Lag0017779 (gene) of Sponge gourd (AG-4) v1 genome