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Lag0017801 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017801
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr5:9059168..9059731
RNA-Seq ExpressionLag0017801
SyntenyLag0017801
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU21788.1 hypothetical protein TSUD_329120, partial [Trifolium subterraneum]1.6e-3037.7Show/hide
Query:  RGTFNIEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNK---SKLGDTIGEFLEYDCGKEDVNW
        R    I+ + KN+F F FA++ ++D V +NGPW+FD+ LLIL   + N++  E+   +  FW+++++LPL   ++    KLG+T+G F E D  KE    
Subjt:  RGTFNIEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNK---SKLGDTIGEFLEYDCGKEDVNW

Query:  NHSMRIRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEKKESESANPNNLE-----FGNWLRFQDLSKIN
           +R+RV VD+ +PL RG  L  +G     W+  +YERL +FCF CGRIGH  + C + ++ +    + LE     FG WLR   L K++
Subjt:  NHSMRIRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEKKESESANPNNLE-----FGNWLRFQDLSKIN

XP_021713609.1 uncharacterized protein LOC110681792 [Chenopodium quinoa]3.3e-3140.11Show/hide
Query:  MRGTFNIEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNKSKLGDTIGEFLEYDCGKEDVNWNH
        ++  F + V+  N+F+F F  ++D   VLE  PW FD+ LL+L+     ++  EI FKN   W++L ++PL   + S + D IGEF+E D   + + W+ 
Subjt:  MRGTFNIEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNKSKLGDTIGEFLEYDCGKEDVNWNH

Query:  SMRIRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEKKESESANPNNL-EFGNWLR
        SMRI+V VDI++PL RG  L A     + WI ++YERL+DFCF CGR+ H  K C  K++++ + P  + ++G WLR
Subjt:  SMRIRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEKKESESANPNNL-EFGNWLR

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]3.0e-3238.42Show/hide
Query:  FNIEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNK---SKLGDTIGEFLEYDCGKEDVNWNHS
        F++++I  NIF FNF    D + +L  GPWTFD+ L+I++ P    + ++++F+N   W+  F+L L   NK   ++LG+ IG F + +    +  W   
Subjt:  FNIEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNK---SKLGDTIGEFLEYDCGKEDVNWNHS

Query:  MRIRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEKKESESANPNNLEFGNWLRFQ
        +R+RV+ D+ +PL RG  L   G    CWI I+YERL DF + CGR+ HI K C +      +   NL++G WLRFQ
Subjt:  MRIRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEKKESESANPNNLEFGNWLRFQ

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]6.9e-3741.71Show/hide
Query:  IEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNKS---KLGDTIGEFLEYDCGKEDVNWNHSMR
        +E I KN+F F+F  + D + V++ GPW FDK L++L+ P  ++   E+EF    FWI LF+LP+ + NK+   +LG+ IG F++ DC ++  +W  S+R
Subjt:  IEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNKS---KLGDTIGEFLEYDCGKEDVNWNHSMR

Query:  IRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEK-KESESANPNNLEFGNWLRF
        IRV +DI++PL RG  +   G    CWI I+YERL DFC+ CG IGH +  C  +   ++  +    E+G WLRF
Subjt:  IRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEK-KESESANPNNLEFGNWLRF

XP_024642377.1 uncharacterized protein LOC112422874 [Medicago truncatula]7.4e-3137.17Show/hide
Query:  MRGTFNIEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCN---KSKLGDTIGEFLEYDCGKEDVN
        ++ T  I+ + KN+F F F S+ D++ +L +GPW+FD+ LLIL+  +  ++  E++     FW+++++LPL   +     KLGD +G+FLE D  + D N
Subjt:  MRGTFNIEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCN---KSKLGDTIGEFLEYDCGKEDVN

Query:  -WNHSMRIRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEKKESESANPNNLE-----FGNWLRFQDLSK
            S+RI+V +D+  PL RG +LK +  K + WI  +YERL +FC+ CGRIGH  K C E+   +     ++E     +G+W+R   L K
Subjt:  -WNHSMRIRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEKKESESANPNNLE-----FGNWLRFQDLSK

TrEMBL top hitse value%identityAlignment
A0A2K3PII7 Cysteine desulfurase mitochondrial-like3.0e-3038.74Show/hide
Query:  MRGTFNIEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNKS---KLGDTIGEFLEYDCGKEDVN
        ++    +E ++KN+F F FA++ D+D VL+NGPW+FD+ LLIL   +  ++  ++E     FW++++ LPL   + S   KLG+ IG+F E D   E   
Subjt:  MRGTFNIEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNKS---KLGDTIGEFLEYDCGKEDVN

Query:  WNHSMRIRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEKKESESANPNNLE------FGNWLRFQDLSK
            +R++V +D+ +PL RG ++K +    N  +  +YERL  FCF CGRIGH  K C E  E E A   +LE      FG WLR   L K
Subjt:  WNHSMRIRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEKKESESANPNNLE------FGNWLRFQDLSK

A0A2Z6LV25 Uncharacterized protein (Fragment)8.0e-3137.7Show/hide
Query:  RGTFNIEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNK---SKLGDTIGEFLEYDCGKEDVNW
        R    I+ + KN+F F FA++ ++D V +NGPW+FD+ LLIL   + N++  E+   +  FW+++++LPL   ++    KLG+T+G F E D  KE    
Subjt:  RGTFNIEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNK---SKLGDTIGEFLEYDCGKEDVNW

Query:  NHSMRIRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEKKESESANPNNLE-----FGNWLRFQDLSKIN
           +R+RV VD+ +PL RG  L  +G     W+  +YERL +FCF CGRIGH  + C + ++ +    + LE     FG WLR   L K++
Subjt:  NHSMRIRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEKKESESANPNNLE-----FGNWLRFQDLSKIN

A0A392M033 CCHC-type domain-containing protein (Fragment)4.0e-3037.17Show/hide
Query:  RGTFNIEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNK---SKLGDTIGEFLEYDCGKEDVNW
        R    I+ + KN++ F FA++ ++D V  NGPW+FD+ LLIL   + N++  E+   +  FW+++++LPL   ++    KLG+T+G F E D  KE    
Subjt:  RGTFNIEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNK---SKLGDTIGEFLEYDCGKEDVNW

Query:  NHSMRIRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEKKESESANPNNLE-----FGNWLRFQDLSKIN
           +R+RV VD+ +PL RG  L  +G     W+  +YERL +FCF CGRIGH  + C + ++ +    + LE     FG WLR   L K++
Subjt:  NHSMRIRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEKKESESANPNNLE-----FGNWLRFQDLSKIN

A0A6J1BSZ1 uncharacterized protein LOC1110054811.5e-3238.42Show/hide
Query:  FNIEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNK---SKLGDTIGEFLEYDCGKEDVNWNHS
        F++++I  NIF FNF    D + +L  GPWTFD+ L+I++ P    + ++++F+N   W+  F+L L   NK   ++LG+ IG F + +    +  W   
Subjt:  FNIEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNK---SKLGDTIGEFLEYDCGKEDVNWNHS

Query:  MRIRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEKKESESANPNNLEFGNWLRFQ
        +R+RV+ D+ +PL RG  L   G    CWI I+YERL DF + CGR+ HI K C +      +   NL++G WLRFQ
Subjt:  MRIRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEKKESESANPNNLEFGNWLRFQ

A0A6J1DU55 uncharacterized protein LOC1110231353.3e-3741.71Show/hide
Query:  IEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNKS---KLGDTIGEFLEYDCGKEDVNWNHSMR
        +E I KN+F F+F  + D + V++ GPW FDK L++L+ P  ++   E+EF    FWI LF+LP+ + NK+   +LG+ IG F++ DC ++  +W  S+R
Subjt:  IEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNKS---KLGDTIGEFLEYDCGKEDVNWNHSMR

Query:  IRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEK-KESESANPNNLEFGNWLRF
        IRV +DI++PL RG  +   G    CWI I+YERL DFC+ CG IGH +  C  +   ++  +    E+G WLRF
Subjt:  IRVKVDISRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEK-KESESANPNNLEFGNWLRF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42140.1 zinc ion binding;nucleic acid binding1.7e-0926.76Show/hide
Query:  FNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNK---SKLGDTIGEFLEYDCGKEDVNWNHSMRIRVKVDISRP
        F F S++    +L  GPW+F+ ++ +++     +   + EFK   FWI++  +PL F      + +G+ +G FLE + G+               D+S  
Subjt:  FNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNK---SKLGDTIGEFLEYDCGKEDVNWNHSMRIRVKVDISRP

Query:  LLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVC
             +LK            +YE+L +FC TCG + H A  C
Subjt:  LLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGAACTTTTAACATAGAAGTAATCAGAAAAAACATATTCAGTTTCAACTTCGCAAGCCAAGATGACAGCGACTGGGTCTTGGAAAATGGACCATGGACTTTTGA
CAAATATTTGTTAATTCTGGAGGCACCCGCTGTAAACCAAAGAACTGTGGAGATAGAATTCAAGAATGCAATATTTTGGATAAAGTTGTTCAATCTTCCACTGGGTTTCT
GTAACAAATCGAAGTTGGGAGATACCATAGGCGAATTCCTTGAATATGATTGTGGGAAAGAAGATGTAAATTGGAATCATAGCATGAGGATTAGAGTTAAAGTAGATATA
TCAAGACCGCTTCTGAGGGGATTCATGCTAAAAGCAAGAGGGATTAAAGACAATTGTTGGATCACAATTCGTTATGAGAGACTCTCGGACTTTTGTTTTACATGTGGAAG
AATTGGACATATAGCTAAAGTATGCATGGAGAAGAAGGAATCGGAATCCGCGAATCCAAACAATCTGGAGTTTGGGAATTGGTTGAGGTTCCAAGACTTATCAAAAATCA
ACAAAAAAACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGAACTTTTAACATAGAAGTAATCAGAAAAAACATATTCAGTTTCAACTTCGCAAGCCAAGATGACAGCGACTGGGTCTTGGAAAATGGACCATGGACTTTTGA
CAAATATTTGTTAATTCTGGAGGCACCCGCTGTAAACCAAAGAACTGTGGAGATAGAATTCAAGAATGCAATATTTTGGATAAAGTTGTTCAATCTTCCACTGGGTTTCT
GTAACAAATCGAAGTTGGGAGATACCATAGGCGAATTCCTTGAATATGATTGTGGGAAAGAAGATGTAAATTGGAATCATAGCATGAGGATTAGAGTTAAAGTAGATATA
TCAAGACCGCTTCTGAGGGGATTCATGCTAAAAGCAAGAGGGATTAAAGACAATTGTTGGATCACAATTCGTTATGAGAGACTCTCGGACTTTTGTTTTACATGTGGAAG
AATTGGACATATAGCTAAAGTATGCATGGAGAAGAAGGAATCGGAATCCGCGAATCCAAACAATCTGGAGTTTGGGAATTGGTTGAGGTTCCAAGACTTATCAAAAATCA
ACAAAAAAACCTGA
Protein sequenceShow/hide protein sequence
MRGTFNIEVIRKNIFSFNFASQDDSDWVLENGPWTFDKYLLILEAPAVNQRTVEIEFKNAIFWIKLFNLPLGFCNKSKLGDTIGEFLEYDCGKEDVNWNHSMRIRVKVDI
SRPLLRGFMLKARGIKDNCWITIRYERLSDFCFTCGRIGHIAKVCMEKKESESANPNNLEFGNWLRFQDLSKINKKT