; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017827 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017827
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr5:9704446..9704947
RNA-Seq ExpressionLag0017827
SyntenyLag0017827
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33754.1 retrotransposon protein [Cucumis melo subsp. melo]1.4e-1136.36Show/hide
Query:  ENITFVERTSAWSAWRDNLVEWMYADWN---------------------------------SMMKEQLSGRNIMVSPNIDSRVRLLKRQYMVIAEMMGPA
        E+I ++E T+ WS WRD+L   M+ DW                                   MM E+LSG  +  +  ID R++ LKR +  IAEM+GPA
Subjt:  ENITFVERTSAWSAWRDNLVEWMYADWN---------------------------------SMMKEQLSGRNIMVSPNIDSRVRLLKRQYMVIAEMMGPA

Query:  CSGFGWNEEQ
        CSGFGWN+E+
Subjt:  CSGFGWNEEQ

KAA0035161.1 retrotransposon protein [Cucumis melo var. makuwa]3.2e-1338.33Show/hide
Query:  MGPDPSFEPANTDELDSNGMPMENITFVERTSAWSAWRDNLVEWMYADWNSMMKEQLSG-----RNIMVSPNIDSRVRLLK----------------RQY
        MG + +FE  +  E DS+ M +ENI FVE T+ W+ WRDNL   M+ DWN+M              I     ++  ++L++                +QY
Subjt:  MGPDPSFEPANTDELDSNGMPMENITFVERTSAWSAWRDNLVEWMYADWNSMMKEQLSG-----RNIMVSPNIDSRVRLLK----------------RQY

Query:  MVIAEMMGPACSGFGWNEEQ
          IAEMMGPACSGFGWNE++
Subjt:  MVIAEMMGPACSGFGWNEEQ

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]6.5e-1440.32Show/hide
Query:  MGPDPSFEPANTDELDSNGMPMENITFVERTSAWSAWRDNLVEWMYADWNSMMKE----------------------QLSGRNIMVSPNIDSRVRLLKRQ
        MG + +F+  +  E DS+ M +ENI FVE T+ W+ WRDNL   M+ DWN+M  +                      QL       + N   ++R LK Q
Subjt:  MGPDPSFEPANTDELDSNGMPMENITFVERTSAWSAWRDNLVEWMYADWNSMMKE----------------------QLSGRNIMVSPNIDSRVRLLKRQ

Query:  YMVIAEMMGPACSGFGWNEEQNAS
        Y  IAEMMGPACS FGWNEE+ A+
Subjt:  YMVIAEMMGPACSGFGWNEEQNAS

TYK06362.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-1240.5Show/hide
Query:  MGPDPSFEPANTDELDSNGMPMENITFVERTSAWSAWRDNLVEWMYADWNSMMK---------------EQLSGRNIMV-------SPNIDSRVRLLKRQ
        +G   +FE  +  E DS+ M +ENI F+E T+ W+ WRDNL   M+ DWN+M                 E L G  + +       + N   +   LK Q
Subjt:  MGPDPSFEPANTDELDSNGMPMENITFVERTSAWSAWRDNLVEWMYADWNSMMK---------------EQLSGRNIMV-------SPNIDSRVRLLKRQ

Query:  YMVIAEMMGPACSGFGWNEEQ
        Y  IAEMMGPACSGFGWNEE+
Subjt:  YMVIAEMMGPACSGFGWNEEQ

XP_031741735.1 uncharacterized protein At2g29880-like [Cucumis sativus]6.5e-1438.98Show/hide
Query:  MGPDPSFEPANTDELDSNGMPMENITFVERTS-------------------AWSAWRDNLVEWMYADWNSMMKEQLSGRNIMVSPNIDSRVRLLKRQYMV
        MG D +FE  +  E DS+ M +ENI FVE T+                    W A+              +MKE++ G NI V+PN++ RV++LK+QY  
Subjt:  MGPDPSFEPANTDELDSNGMPMENITFVERTS-------------------AWSAWRDNLVEWMYADWNSMMKEQLSGRNIMVSPNIDSRVRLLKRQYMV

Query:  IAEMMGPACSGFGWNEEQ
        I EMMGP+CS FGWNE++
Subjt:  IAEMMGPACSGFGWNEEQ

TrEMBL top hitse value%identityAlignment
A0A5A7T0P1 Retrotransposon protein1.6e-1338.33Show/hide
Query:  MGPDPSFEPANTDELDSNGMPMENITFVERTSAWSAWRDNLVEWMYADWNSMMKEQLSG-----RNIMVSPNIDSRVRLLK----------------RQY
        MG + +FE  +  E DS+ M +ENI FVE T+ W+ WRDNL   M+ DWN+M              I     ++  ++L++                +QY
Subjt:  MGPDPSFEPANTDELDSNGMPMENITFVERTSAWSAWRDNLVEWMYADWNSMMKEQLSG-----RNIMVSPNIDSRVRLLK----------------RQY

Query:  MVIAEMMGPACSGFGWNEEQ
          IAEMMGPACSGFGWNE++
Subjt:  MVIAEMMGPACSGFGWNEEQ

A0A5A7U7F7 Retrotransposon protein8.6e-1268.75Show/hide
Query:  MMKEQLSGRNIMVSPNIDSRVRLLKRQYMVIAEMMGPACSGFGWNEEQ
        +MKE++ G NI V+PN+ SRV++LK+QY+ IAEMMGPACSGFGWNEE+
Subjt:  MMKEQLSGRNIMVSPNIDSRVRLLKRQYMVIAEMMGPACSGFGWNEEQ

A0A5A7VG45 Retrotransposon protein3.2e-1440.32Show/hide
Query:  MGPDPSFEPANTDELDSNGMPMENITFVERTSAWSAWRDNLVEWMYADWNSMMKE----------------------QLSGRNIMVSPNIDSRVRLLKRQ
        MG + +F+  +  E DS+ M +ENI FVE T+ W+ WRDNL   M+ DWN+M  +                      QL       + N   ++R LK Q
Subjt:  MGPDPSFEPANTDELDSNGMPMENITFVERTSAWSAWRDNLVEWMYADWNSMMKE----------------------QLSGRNIMVSPNIDSRVRLLKRQ

Query:  YMVIAEMMGPACSGFGWNEEQNAS
        Y  IAEMMGPACS FGWNEE+ A+
Subjt:  YMVIAEMMGPACSGFGWNEEQNAS

A0A5D3C542 Retrotransposon protein1.0e-1240.5Show/hide
Query:  MGPDPSFEPANTDELDSNGMPMENITFVERTSAWSAWRDNLVEWMYADWNSMMK---------------EQLSGRNIMV-------SPNIDSRVRLLKRQ
        +G   +FE  +  E DS+ M +ENI F+E T+ W+ WRDNL   M+ DWN+M                 E L G  + +       + N   +   LK Q
Subjt:  MGPDPSFEPANTDELDSNGMPMENITFVERTSAWSAWRDNLVEWMYADWNSMMK---------------EQLSGRNIMV-------SPNIDSRVRLLKRQ

Query:  YMVIAEMMGPACSGFGWNEEQ
        Y  IAEMMGPACSGFGWNEE+
Subjt:  YMVIAEMMGPACSGFGWNEEQ

E5GBB2 Retrotransposon protein6.6e-1236.36Show/hide
Query:  ENITFVERTSAWSAWRDNLVEWMYADWN---------------------------------SMMKEQLSGRNIMVSPNIDSRVRLLKRQYMVIAEMMGPA
        E+I ++E T+ WS WRD+L   M+ DW                                   MM E+LSG  +  +  ID R++ LKR +  IAEM+GPA
Subjt:  ENITFVERTSAWSAWRDNLVEWMYADWN---------------------------------SMMKEQLSGRNIMVSPNIDSRVRLLKRQYMVIAEMMGPA

Query:  CSGFGWNEEQ
        CSGFGWN+E+
Subjt:  CSGFGWNEEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCCAGATCCGAGCTTCGAACCAGCTAACACCGACGAGCTTGATTCCAACGGGATGCCCATGGAGAACATCACATTCGTGGAGAGAACTAGCGCATGGAGTGCATG
GCGAGATAACTTGGTCGAGTGGATGTACGCTGACTGGAATAGCATGATGAAAGAACAATTGTCGGGACGCAACATCATGGTCAGTCCGAACATTGATTCGAGAGTGAGGC
TACTGAAGAGGCAGTACATGGTGATCGCTGAAATGATGGGCCCAGCGTGCAGTGGATTCGGTTGGAACGAAGAACAAAATGCATCGAGGCGGAAAAGGATATTTTTGACA
AATGGGTCGAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGCCAGATCCGAGCTTCGAACCAGCTAACACCGACGAGCTTGATTCCAACGGGATGCCCATGGAGAACATCACATTCGTGGAGAGAACTAGCGCATGGAGTGCATG
GCGAGATAACTTGGTCGAGTGGATGTACGCTGACTGGAATAGCATGATGAAAGAACAATTGTCGGGACGCAACATCATGGTCAGTCCGAACATTGATTCGAGAGTGAGGC
TACTGAAGAGGCAGTACATGGTGATCGCTGAAATGATGGGCCCAGCGTGCAGTGGATTCGGTTGGAACGAAGAACAAAATGCATCGAGGCGGAAAAGGATATTTTTGACA
AATGGGTCGAGGTAG
Protein sequenceShow/hide protein sequence
MGPDPSFEPANTDELDSNGMPMENITFVERTSAWSAWRDNLVEWMYADWNSMMKEQLSGRNIMVSPNIDSRVRLLKRQYMVIAEMMGPACSGFGWNEEQNASRRKRIFLT
NGSR