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Lag0017829 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017829
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr5:9708538..9708867
RNA-Seq ExpressionLag0017829
SyntenyLag0017829
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.8e-2966.67Show/hide
Query:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWFD
        MDRR F +LC LLRTT RL  T  +DVEEMVA+FLHI+AHDM+NR+I+R+FVRSGET SRHFN+VL ++LRLH+ LLK  + VTN+C D RW+WF+
Subjt:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWFD
KAA0041970.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]4.8e-3066Show/hide
Query:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWFDIRNY
        MDRR FT+LCT+LR  G LE T YVDVEEMVAIFLHI+AHD++NRV RR F RSGET SRHFN VL+ +LRLH +LLK  + VT++C+  +WRWF  +NY
Subjt:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWFDIRNY
KAA0048191.1 retrotransposon protein [Cucumis melo var. makuwa]4.8e-3063Show/hide
Query:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWFDIRNY
        MD+R FT+LCT+LRT G LE T YVDVEEM AIFLHI+AHD++NRV RR F RS  T SRHFNVVL+A+LR+H +LLK  + VT++C+  +WRWF + N+
Subjt:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWFDIRNY
KAA0050107.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]4.8e-3068.42Show/hide
Query:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWF
        MDRR FT+LCT+LRT G LE T YVDVEEMVAIFLHI+AHD++NRV RR F RSGET SRHFN VL+A+LRLH +LLK  + VT++C+  ++RWF
Subjt:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWF
TYK02222.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]6.9e-2964.21Show/hide
Query:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWF
        MD+R FT+LCT+LRT G LE T YVDVEEMVAIF HI+AHD++NRV RR F RSGET SRHFN V +A+LRLH + LK  + VT++C+  +W+WF
Subjt:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWF
TrEMBL top hitse value%identityAlignment
A0A5A7SQU2 Putative nuclease HARBI18.8e-3066.67Show/hide
Query:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWFD
        MDRR F +LC LLRTT RL  T  +DVEEMVA+FLHI+AHDM+NR+I+R+FVRSGET SRHFN+VL ++LRLH+ LLK  + VTN+C D RW+WF+
Subjt:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWFD
A0A5A7TF70 Putative nuclease HARBI12.3e-3066Show/hide
Query:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWFDIRNY
        MDRR FT+LCT+LR  G LE T YVDVEEMVAIFLHI+AHD++NRV RR F RSGET SRHFN VL+ +LRLH +LLK  + VT++C+  +WRWF  +NY
Subjt:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWFDIRNY
A0A5A7U3R2 Retrotransposon protein2.3e-3063Show/hide
Query:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWFDIRNY
        MD+R FT+LCT+LRT G LE T YVDVEEM AIFLHI+AHD++NRV RR F RS  T SRHFNVVL+A+LR+H +LLK  + VT++C+  +WRWF + N+
Subjt:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWFDIRNY
A0A5A7U6W3 Putative nuclease HARBI12.3e-3068.42Show/hide
Query:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWF
        MDRR FT+LCT+LRT G LE T YVDVEEMVAIFLHI+AHD++NRV RR F RSGET SRHFN VL+A+LRLH +LLK  + VT++C+  ++RWF
Subjt:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWF
A0A5A7UXQ6 Putative nuclease HARBI13.3e-2964.21Show/hide
Query:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWF
        MD+R FT+LCT+LRT G LE T YVDVEEMVAIF HI+AHD++NRV RR F RSGET SRHFN V +A+LRLH + LK  + VT++C+  +W+WF
Subjt:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein7.9e-0742.86Show/hide
Query:  FTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDA
        FT LC +L+T   L+PT  + +EE VA+FL I  H+   R +  +F R+ ET  R F  VL A
Subjt:  FTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDA
AT5G28730.1 unknown protein1.3e-0431.31Show/hide
Query:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLK-----SLESVTNTCTDGRWRW
        M    FT LC +L     L+ +  + ++E VAIFL I A +   R I  +F  + ET  R F+ VL A+ RL    ++      L +++N   D    W
Subjt:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLK-----SLESVTNTCTDGRWRW
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)5.6e-1347.22Show/hide
Query:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRL
        MD+  F  LC LL+T G L  TN + +E  +AIFL II H+++ R ++  F  SGET SRHFN VL+A++ +
Subjt:  MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGGAGAACTTTCACCGTCCTCTGCACCCTGTTACGGACGACAGGGAGATTGGAACCAACTAACTATGTTGACGTCGAAGAGATGGTTGCAATATTCCTCCATAT
CATTGCCCACGACATGCAGAATAGAGTCATTCGGCGACAGTTCGTGCGGTCTGGTGAGACCTTTTCTAGGCACTTTAACGTCGTCCTGGATGCGATCCTCCGACTACACT
CAGTACTGCTGAAATCTCTCGAGTCAGTGACTAACACATGCACGGACGGGAGGTGGCGGTGGTTTGACATAAGGAATTATTATTACATTGTCTTCTCACAGAGGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAGGAGAACTTTCACCGTCCTCTGCACCCTGTTACGGACGACAGGGAGATTGGAACCAACTAACTATGTTGACGTCGAAGAGATGGTTGCAATATTCCTCCATAT
CATTGCCCACGACATGCAGAATAGAGTCATTCGGCGACAGTTCGTGCGGTCTGGTGAGACCTTTTCTAGGCACTTTAACGTCGTCCTGGATGCGATCCTCCGACTACACT
CAGTACTGCTGAAATCTCTCGAGTCAGTGACTAACACATGCACGGACGGGAGGTGGCGGTGGTTTGACATAAGGAATTATTATTACATTGTCTTCTCACAGAGGACATGA
Protein sequenceShow/hide protein sequence
MDRRTFTVLCTLLRTTGRLEPTNYVDVEEMVAIFLHIIAHDMQNRVIRRQFVRSGETFSRHFNVVLDAILRLHSVLLKSLESVTNTCTDGRWRWFDIRNYYYIVFSQRT