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Lag0017833 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017833
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Genome locationchr5:9807512..9807826
RNA-Seq ExpressionLag0017833
SyntenyLag0017833
Gene Ontology termsGO:0008152 - metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054521.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]6.4e-0842.35Show/hide
Query:  RKSGCGKKLSIEEHSVSRVRIVELDLGTSTWVRDCLVTVSKASRQLGFWRRRLDAIVLFFSVLLNARGRFSLLSLEPFKGSSGNK
        R S CG+K+ IEE +  R R +EL+LGTS WVRDCLV  ++ S  L FWRRR     +      N  GR  L +    +G +G++
Subjt:  RKSGCGKKLSIEEHSVSRVRIVELDLGTSTWVRDCLVTVSKASRQLGFWRRRLDAIVLFFSVLLNARGRFSLLSLEPFKGSSGNK

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]7.3e-1246.74Show/hide
Query:  MRRVIIDRKKFFRKSGC-GKKLSIEEHSVSRVRIVELDLGTSTWVRDCLVTVSKASRQLGFWRRRLDAIVLFFSVLLNARGRFSLLSLEPFK
        M ++ IDRK+F        +K+ IEE +      +ELD GTS WVRDCLV  + A+  + FW+RRL+  ++FF VL N +GRF++LSLE FK
Subjt:  MRRVIIDRKKFFRKSGC-GKKLSIEEHSVSRVRIVELDLGTSTWVRDCLVTVSKASRQLGFWRRRLDAIVLFFSVLLNARGRFSLLSLEPFK

TrEMBL top hitse value%identityAlignment
A0A0A0KB99 Uncharacterized protein3.4e-0756.67Show/hide
Query:  VELDLGTSTWVRDCLVTVSKASRQLGFW-RRRLDAIVLFFSVLLNARGRFSLLSLEPFKG
        +ELD GTS  VRDCL   + A+    FW RR L   ++FF VL NARGRF +LSLE FKG
Subjt:  VELDLGTSTWVRDCLVTVSKASRQLGFW-RRRLDAIVLFFSVLLNARGRFSLLSLEPFKG

A0A0A0KGZ5 Uncharacterized protein1.1e-0546.88Show/hide
Query:  CGKKLSIEEHSVSRVRIVELDLGTSTWVRDCLVTVSKASRQLGF-WRRRLDAIVLFFSVLLNAR
        CG+K+ IEE +  R   +EL+LG S WV DCLV  ++ S  LGF WRR L+   +FF   L  R
Subjt:  CGKKLSIEEHSVSRVRIVELDLGTSTWVRDCLVTVSKASRQLGF-WRRRLDAIVLFFSVLLNAR

A0A0A0LY03 Uncharacterized protein1.5e-0743.59Show/hide
Query:  GCGKKLSIEEHSVSRVRIVELDLGTSTWVRDCLVTVSKASRQLGFW-RRRLDAIVLFFSVLLNARGRFSLLSLEPFKG
        G  +K+ IEE +  +   ++LDLGT TWV D L   + AS  +G W R++LD  ++FF VL N   RF+++SL+ FKG
Subjt:  GCGKKLSIEEHSVSRVRIVELDLGTSTWVRDCLVTVSKASRQLGFW-RRRLDAIVLFFSVLLNARGRFSLLSLEPFKG

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X23.1e-0842.35Show/hide
Query:  RKSGCGKKLSIEEHSVSRVRIVELDLGTSTWVRDCLVTVSKASRQLGFWRRRLDAIVLFFSVLLNARGRFSLLSLEPFKGSSGNK
        R S CG+K+ IEE +  R R +EL+LGTS WVRDCLV  ++ S  L FWRRR     +      N  GR  L +    +G +G++
Subjt:  RKSGCGKKLSIEEHSVSRVRIVELDLGTSTWVRDCLVTVSKASRQLGFWRRRLDAIVLFFSVLLNARGRFSLLSLEPFKGSSGNK

A0A5D3CQQ0 Uncharacterized protein3.5e-1246.74Show/hide
Query:  MRRVIIDRKKFFRKSGC-GKKLSIEEHSVSRVRIVELDLGTSTWVRDCLVTVSKASRQLGFWRRRLDAIVLFFSVLLNARGRFSLLSLEPFK
        M ++ IDRK+F        +K+ IEE +      +ELD GTS WVRDCLV  + A+  + FW+RRL+  ++FF VL N +GRF++LSLE FK
Subjt:  MRRVIIDRKKFFRKSGC-GKKLSIEEHSVSRVRIVELDLGTSTWVRDCLVTVSKASRQLGFWRRRLDAIVLFFSVLLNARGRFSLLSLEPFK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAGGGTGATAATAGATCGGAAAAAATTCTTTCGCAAGAGTGGGTGTGGGAAGAAATTGTCGATTGAAGAACATAGTGTCTCCAGGGTGAGGATAGTGGAGTTGGA
TTTGGGAACCTCTACTTGGGTTCGAGATTGTTTAGTGACAGTGTCAAAGGCTAGTCGTCAGTTGGGTTTTTGGAGAAGGAGATTAGATGCAATTGTTCTTTTCTTTTCGG
TTCTGTTGAATGCAAGAGGTAGATTCAGCCTCCTCTCGTTGGAACCCTTTAAAGGTAGTAGTGGAAACAAGATAGAAATTGCAAGAAGGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAGGGTGATAATAGATCGGAAAAAATTCTTTCGCAAGAGTGGGTGTGGGAAGAAATTGTCGATTGAAGAACATAGTGTCTCCAGGGTGAGGATAGTGGAGTTGGA
TTTGGGAACCTCTACTTGGGTTCGAGATTGTTTAGTGACAGTGTCAAAGGCTAGTCGTCAGTTGGGTTTTTGGAGAAGGAGATTAGATGCAATTGTTCTTTTCTTTTCGG
TTCTGTTGAATGCAAGAGGTAGATTCAGCCTCCTCTCGTTGGAACCCTTTAAAGGTAGTAGTGGAAACAAGATAGAAATTGCAAGAAGGAAGTGA
Protein sequenceShow/hide protein sequence
MRRVIIDRKKFFRKSGCGKKLSIEEHSVSRVRIVELDLGTSTWVRDCLVTVSKASRQLGFWRRRLDAIVLFFSVLLNARGRFSLLSLEPFKGSSGNKIEIARRK