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Lag0017857 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017857
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr5:10197634..10198505
RNA-Seq ExpressionLag0017857
SyntenyLag0017857
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155000.1 uncharacterized protein LOC111022144 [Momordica charantia]5.1e-3337.31Show/hide
Query:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK
        + C D  K++G VF+L+ +A  WW  +AA EDHAN  + W RFKDLLYDYY+ ETVKD KEA                                   KIK
Subjt:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK

Query:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDKNVA----------------RKMQPHWAF-AARPP--------MPARPPAKAPR--------DKVCF
        RF+KGL + IRG V L RP ++AEA+   LIMDK+V+                RK  P +A  + R P        MP   P    R         K CF
Subjt:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDKNVA----------------RKMQPHWAF-AARPP--------MPARPPAKAPR--------DKVCF

Query:  SCGKEGHYVRQWPAKGEENAEKPALKAPPVQAQGGNQRARVFTLMKEEADDEDVVVTELRLSCLGHPR
         CG+E H+ R+ P             +P V  QG NQRARVF L ++EA D + VVT       G+PR
Subjt:  SCGKEGHYVRQWPAKGEENAEKPALKAPPVQAQGGNQRARVFTLMKEEADDEDVVVTELRLSCLGHPR

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]1.5e-3739.3Show/hide
Query:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK
        + C D  K++G VF+L+ +A  WW  VAA ED+AN P+ W RFK+LLYDYY+PETVKD KEA                               T   KIK
Subjt:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK

Query:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDKNVARKMQP-----------------HWAFAARPP--------MPARPPAKAPR--------DKVCF
        RF+KGLR+ IRG V L RPTT+AEA+   L+MDK+V+ K  P                 +     R P        MP   P    R         K CF
Subjt:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDKNVARKMQP-----------------HWAFAARPP--------MPARPPAKAPR--------DKVCF

Query:  SCGKEGHYVRQWPAKGEENAEKPALKAPPVQAQGGNQRARVFTLMKEEADDEDVVVT
         CG+EGH+ R+ P              PPV  QG NQRARVF L ++EA D + VVT
Subjt:  SCGKEGHYVRQWPAKGEENAEKPALKAPPVQAQGGNQRARVFTLMKEEADDEDVVVT

XP_022156328.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia]3.1e-3033.85Show/hide
Query:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK
        + C+D  K+RG VF+L+ +A  WW+ VAA EDHAN PV+W RFKDLLY+YYFP   +++K                                 T + KI 
Subjt:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK

Query:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDK------------------------NVARKMQPHWAFAARPPMPARPPAKAPR--------DKVCFS
        +FI GLR EI+G + L  PTT+A A+ C L+MDK                        + ++  + H   A R   P   P+             K+CF 
Subjt:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDK------------------------NVARKMQPHWAFAARPPMPARPPAKAPR--------DKVCFS

Query:  CGKEGHYVRQWPAKGEENAEKPALKAPPVQA-QGGNQRARVFTLMKEEADDEDVVVT
        C KEGH+ R+    G  N +  + K P   A QGG Q ARVF L + + +  + VVT
Subjt:  CGKEGHYVRQWPAKGEENAEKPALKAPPVQA-QGGNQRARVFTLMKEEADDEDVVVT

XP_022158750.1 uncharacterized protein LOC111025215 [Momordica charantia]3.7e-3133.98Show/hide
Query:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK
        + C+D  K+RG VF+L+ +A  WW+ VAA EDHAN PV+W RFKDLLY+YYFP TV+++K                                 T + KI 
Subjt:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK

Query:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDK---------------------------NVARKMQPHWAFAARPPM-PARPPAKA----PRDKVCFS
        +FI GLR EI+G + L  PTT+A A+ C L+MDK                             +R+ Q H      PP+ P+   + A       ++C+ 
Subjt:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDK---------------------------NVARKMQPHWAFAARPPM-PARPPAKA----PRDKVCFS

Query:  CGKEGHYVRQWPAKGEENAEKPALKAPPVQAQGGNQRARVFTLMKEEADDEDVVVT
        C KEGH+ R+ P  G               AQGG  RARVF L + + +  + VVT
Subjt:  CGKEGHYVRQWPAKGEENAEKPALKAPPVQAQGGNQRARVFTLMKEEADDEDVVVT

XP_022159077.1 uncharacterized protein LOC111025517 [Momordica charantia]7.7e-2936.17Show/hide
Query:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK
        ++C +  K++GVVF+L+ +A  WW  VA  EDHAN P++W RFKDLLYDYY+P+T+KD KEA                               T   KIK
Subjt:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK

Query:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDKNVARKMQP--------------HWAFAARP-PMPARP------PAKAPR------------DKVCF
        RF+KGLR+ IRG V L RP T+AEA+   LIMD +V+  +QP                A+A +P   P RP      P   P             ++ CF
Subjt:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDKNVARKMQP--------------HWAFAARP-PMPARP------PAKAPR------------DKVCF

Query:  SCGKEGHYVRQWPAKGEENAEKPALKAPPVQAQGG
         CG+EGH+ R+                P V  QGG
Subjt:  SCGKEGHYVRQWPAKGEENAEKPALKAPPVQAQGG

TrEMBL top hitse value%identityAlignment
A0A6J1DL73 uncharacterized protein LOC1110221442.5e-3337.31Show/hide
Query:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK
        + C D  K++G VF+L+ +A  WW  +AA EDHAN  + W RFKDLLYDYY+ ETVKD KEA                                   KIK
Subjt:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK

Query:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDKNVA----------------RKMQPHWAF-AARPP--------MPARPPAKAPR--------DKVCF
        RF+KGL + IRG V L RP ++AEA+   LIMDK+V+                RK  P +A  + R P        MP   P    R         K CF
Subjt:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDKNVA----------------RKMQPHWAF-AARPP--------MPARPPAKAPR--------DKVCF

Query:  SCGKEGHYVRQWPAKGEENAEKPALKAPPVQAQGGNQRARVFTLMKEEADDEDVVVTELRLSCLGHPR
         CG+E H+ R+ P             +P V  QG NQRARVF L ++EA D + VVT       G+PR
Subjt:  SCGKEGHYVRQWPAKGEENAEKPALKAPPVQAQGGNQRARVFTLMKEEADDEDVVVTELRLSCLGHPR

A0A6J1DQB9 Reverse transcriptase1.5e-3033.85Show/hide
Query:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK
        + C+D  K+RG VF+L+ +A  WW+ VAA EDHAN PV+W RFKDLLY+YYFP   +++K                                 T + KI 
Subjt:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK

Query:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDK------------------------NVARKMQPHWAFAARPPMPARPPAKAPR--------DKVCFS
        +FI GLR EI+G + L  PTT+A A+ C L+MDK                        + ++  + H   A R   P   P+             K+CF 
Subjt:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDK------------------------NVARKMQPHWAFAARPPMPARPPAKAPR--------DKVCFS

Query:  CGKEGHYVRQWPAKGEENAEKPALKAPPVQA-QGGNQRARVFTLMKEEADDEDVVVT
        C KEGH+ R+    G  N +  + K P   A QGG Q ARVF L + + +  + VVT
Subjt:  CGKEGHYVRQWPAKGEENAEKPALKAPPVQA-QGGNQRARVFTLMKEEADDEDVVVT

A0A6J1DUM2 uncharacterized protein LOC1110232477.5e-3839.3Show/hide
Query:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK
        + C D  K++G VF+L+ +A  WW  VAA ED+AN P+ W RFK+LLYDYY+PETVKD KEA                               T   KIK
Subjt:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK

Query:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDKNVARKMQP-----------------HWAFAARPP--------MPARPPAKAPR--------DKVCF
        RF+KGLR+ IRG V L RPTT+AEA+   L+MDK+V+ K  P                 +     R P        MP   P    R         K CF
Subjt:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDKNVARKMQP-----------------HWAFAARPP--------MPARPPAKAPR--------DKVCF

Query:  SCGKEGHYVRQWPAKGEENAEKPALKAPPVQAQGGNQRARVFTLMKEEADDEDVVVT
         CG+EGH+ R+ P              PPV  QG NQRARVF L ++EA D + VVT
Subjt:  SCGKEGHYVRQWPAKGEENAEKPALKAPPVQAQGGNQRARVFTLMKEEADDEDVVVT

A0A6J1DWP4 uncharacterized protein LOC1110252151.8e-3133.98Show/hide
Query:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK
        + C+D  K+RG VF+L+ +A  WW+ VAA EDHAN PV+W RFKDLLY+YYFP TV+++K                                 T + KI 
Subjt:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK

Query:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDK---------------------------NVARKMQPHWAFAARPPM-PARPPAKA----PRDKVCFS
        +FI GLR EI+G + L  PTT+A A+ C L+MDK                             +R+ Q H      PP+ P+   + A       ++C+ 
Subjt:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDK---------------------------NVARKMQPHWAFAARPPM-PARPPAKA----PRDKVCFS

Query:  CGKEGHYVRQWPAKGEENAEKPALKAPPVQAQGGNQRARVFTLMKEEADDEDVVVT
        C KEGH+ R+ P  G               AQGG  RARVF L + + +  + VVT
Subjt:  CGKEGHYVRQWPAKGEENAEKPALKAPPVQAQGGNQRARVFTLMKEEADDEDVVVT

A0A6J1DYU5 uncharacterized protein LOC1110255173.7e-2936.17Show/hide
Query:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK
        ++C +  K++GVVF+L+ +A  WW  VA  EDHAN P++W RFKDLLYDYY+P+T+KD KEA                               T   KIK
Subjt:  MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEAN------------------------------TPKRKIK

Query:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDKNVARKMQP--------------HWAFAARP-PMPARP------PAKAPR------------DKVCF
        RF+KGLR+ IRG V L RP T+AEA+   LIMD +V+  +QP                A+A +P   P RP      P   P             ++ CF
Subjt:  RFIKGLREEIRGFVALSRPTTFAEALTCVLIMDKNVARKMQP--------------HWAFAARP-PMPARP------PAKAPR------------DKVCF

Query:  SCGKEGHYVRQWPAKGEENAEKPALKAPPVQAQGG
         CG+EGH+ R+                P V  QGG
Subjt:  SCGKEGHYVRQWPAKGEENAEKPALKAPPVQAQGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTGTAATGATCCCCTGAAGATTAGAGGAGTGGTCTTCATACTCAAGGATGACGCTCGCATGTGGTGGCAGTTCGTGGCAGCCGTCGAAGATCATGCCAATCAACC
GGTTTCATGGGAAAGGTTCAAAGACCTCTTGTACGATTATTACTTCCCGGAGACAGTCAAAGATGATAAAGAAGCTAACACACCGAAAAGGAAGATCAAGAGGTTCATAA
AAGGCCTCCGTGAGGAAATCCGTGGTTTTGTGGCCCTGAGCAGACCCACAACCTTCGCTGAAGCACTCACATGCGTGCTGATCATGGATAAAAATGTGGCAAGGAAGATG
CAGCCTCATTGGGCGTTCGCCGCGCGTCCTCCCATGCCCGCGCGTCCGCCGGCCAAGGCCCCTCGTGATAAGGTCTGTTTCAGTTGCGGTAAAGAAGGACATTATGTCAG
GCAGTGGCCCGCTAAAGGCGAAGAAAATGCTGAGAAGCCAGCCCTTAAGGCCCCACCAGTGCAAGCTCAAGGTGGGAATCAAAGGGCGCGTGTCTTTACCCTCATGAAGG
AAGAAGCAGATGATGAGGATGTCGTAGTTACAGAATTAAGACTAAGTTGCCTAGGTCATCCGAGGAAAGCACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACTGTAATGATCCCCTGAAGATTAGAGGAGTGGTCTTCATACTCAAGGATGACGCTCGCATGTGGTGGCAGTTCGTGGCAGCCGTCGAAGATCATGCCAATCAACC
GGTTTCATGGGAAAGGTTCAAAGACCTCTTGTACGATTATTACTTCCCGGAGACAGTCAAAGATGATAAAGAAGCTAACACACCGAAAAGGAAGATCAAGAGGTTCATAA
AAGGCCTCCGTGAGGAAATCCGTGGTTTTGTGGCCCTGAGCAGACCCACAACCTTCGCTGAAGCACTCACATGCGTGCTGATCATGGATAAAAATGTGGCAAGGAAGATG
CAGCCTCATTGGGCGTTCGCCGCGCGTCCTCCCATGCCCGCGCGTCCGCCGGCCAAGGCCCCTCGTGATAAGGTCTGTTTCAGTTGCGGTAAAGAAGGACATTATGTCAG
GCAGTGGCCCGCTAAAGGCGAAGAAAATGCTGAGAAGCCAGCCCTTAAGGCCCCACCAGTGCAAGCTCAAGGTGGGAATCAAAGGGCGCGTGTCTTTACCCTCATGAAGG
AAGAAGCAGATGATGAGGATGTCGTAGTTACAGAATTAAGACTAAGTTGCCTAGGTCATCCGAGGAAAGCACATTGA
Protein sequenceShow/hide protein sequence
MNCNDPLKIRGVVFILKDDARMWWQFVAAVEDHANQPVSWERFKDLLYDYYFPETVKDDKEANTPKRKIKRFIKGLREEIRGFVALSRPTTFAEALTCVLIMDKNVARKM
QPHWAFAARPPMPARPPAKAPRDKVCFSCGKEGHYVRQWPAKGEENAEKPALKAPPVQAQGGNQRARVFTLMKEEADDEDVVVTELRLSCLGHPRKAH