CuGenDBv2

Gene ID	Lag0017869
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Gag/pol protein
Genome location	chr5:10457409..10463597
RNA-Seq Expression	Lag0017869
Synteny	Lag0017869
Gene Ontology terms	GO:0016020 - membrane (cellular component) GO:0005488 - binding (molecular function)
InterPro domains	IPR011993 - PH-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0054700.1 gag/pol protein [Cucumis melo var. makuwa]

1.0e-40

73.64

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Query:  SVGSLMYVMLCTRPNICYGVGIVSRVS-----IYLQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEVVWLQKFLMDLEVVPNMNLPITLYCDNSGVVA
        +VG+LMYVML TRP+ICY VGIVSR S       L  GVVVWRSIKQGCIADSTMKVEYVAACE AK+ VWL+KFL DLEVVPNMNLPITLYCDNSG+VA
Subjt:  SVGSLMYVMLCTRPNICYGVGIVSRVS-----IYLQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEVVWLQKFLMDLEVVPNMNLPITLYCDNSGVVA

Query:  NSKE---HK--EQIKSKYHLIRKIVLRGE
        NSKE   HK  + I+ KYHLI +IV RG+
Subjt:  NSKE---HK--EQIKSKYHLIRKIVLRGE

KAA0060794.1 putative Integrase core domain [Cucumis melo var. makuwa]

3.3e-39

73.23

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Query:  SVGSLMYVMLCTRPNICYGVGIVSRVS-----IYLQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEVVWLQKFLMDLEVVPNMNLPITLYCDNSGVVA
        +VGSLMY MLCTRP+ICY VGIVSR S       L  G VVWRSIKQ CIADSTM+ EYVAACE AKE VWL+KFL DLEVVPNMNLPITLYCDNSG VA
Subjt:  SVGSLMYVMLCTRPNICYGVGIVSRVS-----IYLQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEVVWLQKFLMDLEVVPNMNLPITLYCDNSGVVA

Query:  NSKE---HK--EQIKSKYHLIRKIVLR
        NSKE   HK  + I+ KYHLIR+IV R
Subjt:  NSKE---HK--EQIKSKYHLIRKIVLR

KAA0064189.1 gag/pol protein [Cucumis melo var. makuwa]

3.7e-38

59.38

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Query:  SVGSLMYVMLCTRPNICYGVGIVSRVSIY------------------------------------LQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEV
        +VGSLMY MLCTRP+ICY VGIVSR + Y                                    L  G +VWRSIKQGCIADSTM+ EYVAACEVAKE 
Subjt:  SVGSLMYVMLCTRPNICYGVGIVSRVSIY------------------------------------LQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEV

Query:  VWLQKFLMDLEVVPNMNLPITLYCDNSGVVANSKE---HK--EQIKSKYHLIRKIVLRGE
        VWL+KFL DLEVVPNMNLPITLYCDNSG VANSKE   HK  + I+ KYHLIR+IV RG+
Subjt:  VWLQKFLMDLEVVPNMNLPITLYCDNSGVVANSKE---HK--EQIKSKYHLIRKIVLRGE

TYK02840.1 gag/pol protein [Cucumis melo var. makuwa]

3.7e-38

59.38

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Query:  SVGSLMYVMLCTRPNICYGVGIVSRVSIY------------------------------------LQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEV
        +VGSLMY MLCTRP+ICY VGIVSR + Y                                    L  G +VWRSIKQGCIADSTM+ EYVAACEVAKE 
Subjt:  SVGSLMYVMLCTRPNICYGVGIVSRVSIY------------------------------------LQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEV

Query:  VWLQKFLMDLEVVPNMNLPITLYCDNSGVVANSKE---HK--EQIKSKYHLIRKIVLRGE
        VWL+KFL DLEVVPNMNLPITLYCDNSG VANSKE   HK  + I+ KYHLIR+IV RG+
Subjt:  VWLQKFLMDLEVVPNMNLPITLYCDNSGVVANSKE---HK--EQIKSKYHLIRKIVLRGE

TYK20422.1 gag/pol protein [Cucumis melo var. makuwa]

7.0e-37

66.18

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Query:  SVGSLMYVMLCTRPNICYGVGIVSR-----------VSIYLQRGVVVWRSIKQGC-IADSTMKVEYVAACEVAKEVVWLQKFLMDLEVVPNMNLPITLYC
        +VGSLMY MLCTRP+ICY VGIVSR           +   L  G VVWRSIKQGC IADSTM+ EYV ACE AKE VWL+KF+ DLEV+PNMNLPITLY 
Subjt:  SVGSLMYVMLCTRPNICYGVGIVSR-----------VSIYLQRGVVVWRSIKQGC-IADSTMKVEYVAACEVAKEVVWLQKFLMDLEVVPNMNLPITLYC

Query:  DNSGVVANSKE---HK--EQIKSKYHLIRKIVLRGE
        DNSG VANSKE   HK  + I+ KYHLIR+IV RG+
Subjt:  DNSGVVANSKE---HK--EQIKSKYHLIRKIVLRGE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U4T9 Gag/pol protein

3.4e-37

60.9

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Query:  SVGSLMYVMLCTRPNICYGVGIVSR---------------------------VSIY-----LQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEVVWLQ
        +VGSLMY MLCTRP+I Y VGIVSR                           + IY     L RG VVWRSIKQGCIADSTM+ EYVAACEVAKE VWL+
Subjt:  SVGSLMYVMLCTRPNICYGVGIVSR---------------------------VSIY-----LQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEVVWLQ

Query:  KFLMDLEVVPNMNLPITLYCDNSGVVANSKE---HK--EQIKSKYHLIRKIVLRGE
        KFL DLEVVPNMNLPITLYCDNSG VANSKE   HK  + I+ K+HL+R+IV RG+
Subjt:  KFLMDLEVVPNMNLPITLYCDNSGVVANSKE---HK--EQIKSKYHLIRKIVLRGE

A0A5A7UHE8 Gag/pol protein

5.0e-41

73.64

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Query:  SVGSLMYVMLCTRPNICYGVGIVSRVS-----IYLQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEVVWLQKFLMDLEVVPNMNLPITLYCDNSGVVA
        +VG+LMYVML TRP+ICY VGIVSR S       L  GVVVWRSIKQGCIADSTMKVEYVAACE AK+ VWL+KFL DLEVVPNMNLPITLYCDNSG+VA
Subjt:  SVGSLMYVMLCTRPNICYGVGIVSRVS-----IYLQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEVVWLQKFLMDLEVVPNMNLPITLYCDNSGVVA

Query:  NSKE---HK--EQIKSKYHLIRKIVLRGE
        NSKE   HK  + I+ KYHLI +IV RG+
Subjt:  NSKE---HK--EQIKSKYHLIRKIVLRGE

A0A5A7V0F0 Putative Integrase core domain

1.6e-39

73.23

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Query:  SVGSLMYVMLCTRPNICYGVGIVSRVS-----IYLQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEVVWLQKFLMDLEVVPNMNLPITLYCDNSGVVA
        +VGSLMY MLCTRP+ICY VGIVSR S       L  G VVWRSIKQ CIADSTM+ EYVAACE AKE VWL+KFL DLEVVPNMNLPITLYCDNSG VA
Subjt:  SVGSLMYVMLCTRPNICYGVGIVSRVS-----IYLQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEVVWLQKFLMDLEVVPNMNLPITLYCDNSGVVA

Query:  NSKE---HK--EQIKSKYHLIRKIVLR
        NSKE   HK  + I+ KYHLIR+IV R
Subjt:  NSKE---HK--EQIKSKYHLIRKIVLR

A0A5A7VF82 Gag/pol protein

1.8e-38

59.38

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Query:  SVGSLMYVMLCTRPNICYGVGIVSRVSIY------------------------------------LQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEV
        +VGSLMY MLCTRP+ICY VGIVSR + Y                                    L  G +VWRSIKQGCIADSTM+ EYVAACEVAKE 
Subjt:  SVGSLMYVMLCTRPNICYGVGIVSRVSIY------------------------------------LQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEV

Query:  VWLQKFLMDLEVVPNMNLPITLYCDNSGVVANSKE---HK--EQIKSKYHLIRKIVLRGE
        VWL+KFL DLEVVPNMNLPITLYCDNSG VANSKE   HK  + I+ KYHLIR+IV RG+
Subjt:  VWLQKFLMDLEVVPNMNLPITLYCDNSGVVANSKE---HK--EQIKSKYHLIRKIVLRGE

A0A5D3BUN8 Gag/pol protein

1.8e-38

59.38

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Query:  SVGSLMYVMLCTRPNICYGVGIVSRVSIY------------------------------------LQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEV
        +VGSLMY MLCTRP+ICY VGIVSR + Y                                    L  G +VWRSIKQGCIADSTM+ EYVAACEVAKE 
Subjt:  SVGSLMYVMLCTRPNICYGVGIVSRVSIY------------------------------------LQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEV

Query:  VWLQKFLMDLEVVPNMNLPITLYCDNSGVVANSKE---HK--EQIKSKYHLIRKIVLRGE
        VWL+KFL DLEVVPNMNLPITLYCDNSG VANSKE   HK  + I+ KYHLIR+IV RG+
Subjt:  VWLQKFLMDLEVVPNMNLPITLYCDNSGVVANSKE---HK--EQIKSKYHLIRKIVLRGE

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

7.8e-07

24.31

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Query:  ANTTTMTTPSLYELLIGPNGPADQKLQRSVGSLMYVMLCTRPNICYGVGIVSRVSI--------------------------------------------
        A +T + +   YELL   +   +   +  +G LMY+MLCTRP++   V I+SR S                                             
Subjt:  ANTTTMTTPSLYELLIGPNGPADQKLQRSVGSLMYVMLCTRPNICYGVGIVSRVSI--------------------------------------------

Query:  -------------YLQR----GVVVWRSIKQGCIADSTMKVEYVAACEVAKEVVWLQKFLMDLEVVPNMNLPITLYCDNSGVVA---NSKEHK--EQIKS
                     YL +     ++ W + +Q  +A S+ + EY+A  E  +E +WL+  L  + +   +  PI +Y DN G ++   N   HK  + I  
Subjt:  -------------YLQR----GVVVWRSIKQGCIADSTMKVEYVAACEVAKEVVWLQKFLMDLEVVPNMNLPITLYCDNSGVVA---NSKEHK--EQIKS

Query:  KYHLIRKIVLRGEKCNEY
        KYH  R+ V     C EY
Subjt:  KYHLIRKIVLRGEKCNEY

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.6e-10

28.25

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Query:  SVGSLMYVMLCTRPNICYGVGIVSR---------------VSIYLQ------------------------------------------RGVVVWRSIKQG
        +VGSLMY M+CTRP+I + VG+VSR               +  YL+                                           G + W+S  Q 
Subjt:  SVGSLMYVMLCTRPNICYGVGIVSR---------------VSIYLQ------------------------------------------RGVVVWRSIKQG

Query:  CIADSTMKVEYVAACEVAKEVVWLQKFLMDLEVVPNMNLPITLYCDNSGVVANSKE-----HKEQIKSKYHLIRKIV
        C+A ST + EY+AA E  KE++WL++FL +L +         +YCD+   +  SK        + I  +YH IR++V
Subjt:  CIADSTMKVEYVAACEVAKEVVWLQKFLMDLEVVPNMNLPITLYCDNSGVVANSKE-----HKEQIKSKYHLIRKIV

Q9LQ55 Dynamin-2B

9.2e-16

65.08

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Query:  KEKPGKEDKEVQETSGLKTAGPEGEITAGFLLKKSTKTNGWSKRWFVLNEKTGKMKNTATKHD
        ++K   ++KE  E SGLKTAGPEGEITAG+L+KKS KTNGWS+RWFVLNEKTGK+  T  + +
Subjt:  KEKPGKEDKEVQETSGLKTAGPEGEITAGFLLKKSTKTNGWSKRWFVLNEKTGKMKNTATKHD

Q9SE83 Dynamin-2A

1.5e-18

70.31

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Query:  MKEKPGKEDKEVQETSGLKTAGPEGEITAGFLLKKSTKTNGWSKRWFVLNEKTGKMKNTATKHD
        MK+KP  +DKE  E SGLKTAGPEGEITAG+L+KKS KTNGWS+RWFVLNEKTGK+  T  + +
Subjt:  MKEKPGKEDKEVQETSGLKTAGPEGEITAGFLLKKSTKTNGWSKRWFVLNEKTGKMKNTATKHD

Arabidopsis top hits

e value

%identity

Alignment

AT1G10290.1 dynamin-like protein 6

1.1e-19

70.31

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Query:  MKEKPGKEDKEVQETSGLKTAGPEGEITAGFLLKKSTKTNGWSKRWFVLNEKTGKMKNTATKHD
        MK+KP  +DKE  E SGLKTAGPEGEITAG+L+KKS KTNGWS+RWFVLNEKTGK+  T  + +
Subjt:  MKEKPGKEDKEVQETSGLKTAGPEGEITAGFLLKKSTKTNGWSKRWFVLNEKTGKMKNTATKHD

AT1G59610.1 dynamin-like 3

6.5e-17

65.08

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Query:  KEKPGKEDKEVQETSGLKTAGPEGEITAGFLLKKSTKTNGWSKRWFVLNEKTGKMKNTATKHD
        ++K   ++KE  E SGLKTAGPEGEITAG+L+KKS KTNGWS+RWFVLNEKTGK+  T  + +
Subjt:  KEKPGKEDKEVQETSGLKTAGPEGEITAGFLLKKSTKTNGWSKRWFVLNEKTGKMKNTATKHD

Sequences

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CDS sequence

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ATGAAGGAAAAACCAGGCAAAGAGGACAAAGAAGTACAGGAAACTTCCGGTTTGAAGACTGCGGGTCCAGAAGGGGAAATAACAGCAGGTTTTCTGTTAAAGAAAAGCAC
TAAAACAAATGGATGGAGTAAAAGATGGTTTGTTCTGAATGAGAAGACGGGAAAGATGAAAAACACAGCAACTAAGCACGATCTTTCTTTAGAAATTCAAGGACCAAGTC
TTGCGAACACCACCACTATGACTACACCATCTCTTTACGAGCTACTAATAGGACCTAATGGACCTGCAGATCAGAAGCTCCAACGATCTGTGGGCAGTCTTATGTATGTC
ATGTTGTGTACGAGGCCTAACATTTGCTATGGAGTTGGGATAGTCAGCAGGGTCAGTATTTACCTTCAACGGGGAGTTGTAGTCTGGCGTAGCATCAAGCAAGGATGCAT
TGCAGACTCCACCATGAAGGTCGAATATGTTGCTGCTTGTGAAGTAGCTAAGGAGGTTGTATGGCTACAGAAGTTCTTGATGGATTTGGAAGTTGTTCCAAATATGAACT
TGCCAATCACCCTTTACTGTGATAATAGTGGTGTAGTGGCAAATTCTAAAGAACATAAAGAGCAAATAAAGAGCAAATATCATCTCATCAGAAAGATTGTGCTACGAGGG
GAGAAGTGTAATGAGTATTGTGAATGCCCTAGTTTATTAATACTTACCGGATTCCGAAGAACGCTGCACAATGCTCCAAGGATCTCGTTCTTGGGACTTCCAACGGACAC
CACCACTCGAATCACCCGCTATTCTCTTGGGTCGCTGAGATATGGCTTGTGGGAACCCAAATTCAGTCTTGGAAGGGAATTTTCAGCAAGAACCCGTTATGAGCTAGCAG
GTGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATACGAGATTGATCAGCTAAACTCATTAACCGAGTCAATCAACATTCGTTAA

mRNA sequence

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Protein sequence

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MKEKPGKEDKEVQETSGLKTAGPEGEITAGFLLKKSTKTNGWSKRWFVLNEKTGKMKNTATKHDLSLEIQGPSLANTTTMTTPSLYELLIGPNGPADQKLQRSVGSLMYV
MLCTRPNICYGVGIVSRVSIYLQRGVVVWRSIKQGCIADSTMKVEYVAACEVAKEVVWLQKFLMDLEVVPNMNLPITLYCDNSGVVANSKEHKEQIKSKYHLIRKIVLRG
EKCNEYCECPSLLILTGFRRTLHNAPRISFLGLPTDTTTRITRYSLGSLRYGLWEPKFSLGREFSARTRYELAGGPNGPTDQKLQRYEIDQLNSLTESINIR

Lag0017869 (gene) of Sponge gourd (AG-4) v1 genome