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Lag0017886 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017886
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr5:10869344..10869876
RNA-Seq ExpressionLag0017886
SyntenyLag0017886
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7990634.1 hypothetical protein I3843_02G035100 [Carya illinoinensis]1.3e-2542.6Show/hide
Query:  SRELIPLDPEIEGTIHRIRRENREIIHMADQNPPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCASEDRP---PRIQI--------
        SR++IP+DPEIE T+  +RR   +I+ MA+++    PR ++DY +PV  G  S I+  PINANNFELK  LI M +       P   P I +        
Subjt:  SRELIPLDPEIEGTIHRIRRENREIIHMADQNPPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCASEDRP---PRIQI--------

Query:  -------------LILNHFWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTFQQ
                     L L  F + DKAR WLQS+  GSI +W  + + FL KFFPPAKT +LR+EIG F+Q
Subjt:  -------------LILNHFWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTFQQ

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]1.3e-2844Show/hide
Query:  RNSRELIPLDPEIEGTIHRIRRENREIIHMADQNPPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCA-----SEDRPPRIQILI--
        R++  L+PLDPEI+ T    RR  R +++   +   E P+ IRDYFQP     Q GI+  PIN NNFELK GLIQMAR+ A     +ED    ++  +  
Subjt:  RNSRELIPLDPEIEGTIHRIRRENREIIHMADQNPPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCA-----SEDRPPRIQILI--

Query:  -----------------LNHFWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTFQQQYDE
                         L  F + D+A+DWL++I   SITTW+ L Q FL K+FPPAK+ +LRTEIGTF+Q  DE
Subjt:  -----------------LNHFWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTFQQQYDE

XP_021279280.1 LOW QUALITY PROTEIN: uncharacterized protein LOC110412945 [Herrania umbratica]1.3e-2038.71Show/hide
Query:  RNSRELIPLDPEIEGTIHRIRRENREII----HMADQN----------PPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCASEDRP
        RN+  L+P DP+IE T  R RREN ++      MA+ N           PE  R +RDY  P+ QG    I    INANNFE+K   IQM +        
Subjt:  RNSRELIPLDPEIEGTIHRIRRENREII----HMADQN----------PPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCASEDRP

Query:  PR----------IQI---------------LILNHFWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTFQQ
        P           ++I               L L  F + DKA+ WL S+  GSITTW+ L Q FL KFFPPAKT K+R +I +F Q
Subjt:  PR----------IQI---------------LILNHFWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTFQQ

XP_021279860.1 uncharacterized protein LOC110413413 [Herrania umbratica]1.6e-2038.71Show/hide
Query:  RNSRELIPLDPEIEGTIHRIRRENREII----HMADQN----------PPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCASEDRP
        RN+  L+P DP+IE T  R RREN ++      MA+ N           PE  R +RDY  P+ QG    I    INANNFE+K   IQM +        
Subjt:  RNSRELIPLDPEIEGTIHRIRRENREII----HMADQN----------PPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCASEDRP

Query:  PR----------IQI---------------LILNHFWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTFQQ
        P           ++I               L L  F + DKA+ WL S+  GSITTW+ L Q FL KFFPPAKT K+R +I +F Q
Subjt:  PR----------IQI---------------LILNHFWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTFQQ

XP_031392344.1 uncharacterized protein LOC116204412 [Punica granatum]9.7e-2143.9Show/hide
Query:  MRNSR--ELIPLDPEIEGTIHRIRRENR-----EIIHMADQNPPEE----PRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCA----SED
        MR SR  EL+PLDPEIE T+HR+RRENR     +++ MAD +   +     R +RDY  P   G  S I    I ANNFELK  LIQM +         +
Subjt:  MRNSR--ELIPLDPEIEGTIHRIRRENR-----EIIHMADQNPPEE----PRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCA----SED

Query:  RPPRIQILILNH---FWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTF
         P       L +   F + DKAR W  S+   SITTW  L   FL++FFPPA+T +LR EI  F
Subjt:  RPPRIQILILNH---FWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTF

TrEMBL top hitse value%identityAlignment
A0A6J0ZX64 LOW QUALITY PROTEIN: uncharacterized protein LOC1104129456.1e-2138.71Show/hide
Query:  RNSRELIPLDPEIEGTIHRIRRENREII----HMADQN----------PPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCASEDRP
        RN+  L+P DP+IE T  R RREN ++      MA+ N           PE  R +RDY  P+ QG    I    INANNFE+K   IQM +        
Subjt:  RNSRELIPLDPEIEGTIHRIRRENREII----HMADQN----------PPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCASEDRP

Query:  PR----------IQI---------------LILNHFWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTFQQ
        P           ++I               L L  F + DKA+ WL S+  GSITTW+ L Q FL KFFPPAKT K+R +I +F Q
Subjt:  PR----------IQI---------------LILNHFWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTFQQ

A0A6J0ZYV0 uncharacterized protein LOC1104134138.0e-2138.71Show/hide
Query:  RNSRELIPLDPEIEGTIHRIRRENREII----HMADQN----------PPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCASEDRP
        RN+  L+P DP+IE T  R RREN ++      MA+ N           PE  R +RDY  P+ QG    I    INANNFE+K   IQM +        
Subjt:  RNSRELIPLDPEIEGTIHRIRRENREII----HMADQN----------PPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCASEDRP

Query:  PR----------IQI---------------LILNHFWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTFQQ
        P           ++I               L L  F + DKA+ WL S+  GSITTW+ L Q FL KFFPPAKT K+R +I +F Q
Subjt:  PR----------IQI---------------LILNHFWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTFQQ

A0A6P8CTC3 uncharacterized protein LOC1161938991.2e-1940.33Show/hide
Query:  MRNSR--ELIPLDPEIEGTIHRIRRENR-----EIIHMADQNPPEE----PRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCASEDRPPR
        MR SR  EL+PLDPEIE T+HR+RRENR     +++ MAD +   +     R +RDY  P   G  S I    I ANNFELK  LIQM +       P  
Subjt:  MRNSR--ELIPLDPEIEGTIHRIRRENR-----EIIHMADQNPPEE----PRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCASEDRPPR

Query:  ------------------------IQILILNHFWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTF
                                +  L L  F + DKAR W  S+   SITTW  L   FL++FFPPA+T +LR EI  F
Subjt:  ------------------------IQILILNHFWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTF

A0A6P8DAI3 uncharacterized protein LOC1162029731.2e-1940.33Show/hide
Query:  MRNSR--ELIPLDPEIEGTIHRIRRENR-----EIIHMADQNPPEE----PRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCASEDRPPR
        MR SR  EL+PLDPEIE T+HR+RRENR     +++ MAD +   +     R +RDY  P   G  S I    I ANNFELK  LIQM +       P  
Subjt:  MRNSR--ELIPLDPEIEGTIHRIRRENR-----EIIHMADQNPPEE----PRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCASEDRPPR

Query:  ------------------------IQILILNHFWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTF
                                +  L L  F + DKAR W  S+   SITTW  L   FL++FFPPA+T +LR EI  F
Subjt:  ------------------------IQILILNHFWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTF

A0A6P8DCY0 uncharacterized protein LOC1162044124.7e-2143.9Show/hide
Query:  MRNSR--ELIPLDPEIEGTIHRIRRENR-----EIIHMADQNPPEE----PRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCA----SED
        MR SR  EL+PLDPEIE T+HR+RRENR     +++ MAD +   +     R +RDY  P   G  S I    I ANNFELK  LIQM +         +
Subjt:  MRNSR--ELIPLDPEIEGTIHRIRRENR-----EIIHMADQNPPEE----PRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCA----SED

Query:  RPPRIQILILNH---FWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTF
         P       L +   F + DKAR W  S+   SITTW  L   FL++FFPPA+T +LR EI  F
Subjt:  RPPRIQILILNH---FWIFDKARDWLQSITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTAATAGTAGAGAATTGATACCGTTGGATCCCGAAATCGAAGGAACAATTCATAGGATTCGAAGAGAAAACAGAGAAATTATTCACATGGCTGACCAAAATCCACC
TGAGGAGCCTAGGCCTATTAGAGACTACTTTCAGCCCGTGTTTCAGGGGCAACAGTCGGGGATTGTCTATGCCCCGATTAATGCCAACAACTTTGAGTTGAAGACCGGTC
TCATTCAGATGGCTCGAGACTGTGCATCAGAGGATCGCCCACCAAGGATCCAAATTCTCATCTTAAATCATTTTTGGATATTTGATAAAGCACGAGATTGGTTGCAGTCT
ATTACCCTTGGGAGCATCACCACCTGGGATGCTTTGGTCCAGGACTTTTTGAAGAAATTCTTCCCTCCTGCAAAGACGGTCAAGCTGAGGACCGAGATTGGGACATTCCA
ACAACAATATGATGAGGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGTAATAGTAGAGAATTGATACCGTTGGATCCCGAAATCGAAGGAACAATTCATAGGATTCGAAGAGAAAACAGAGAAATTATTCACATGGCTGACCAAAATCCACC
TGAGGAGCCTAGGCCTATTAGAGACTACTTTCAGCCCGTGTTTCAGGGGCAACAGTCGGGGATTGTCTATGCCCCGATTAATGCCAACAACTTTGAGTTGAAGACCGGTC
TCATTCAGATGGCTCGAGACTGTGCATCAGAGGATCGCCCACCAAGGATCCAAATTCTCATCTTAAATCATTTTTGGATATTTGATAAAGCACGAGATTGGTTGCAGTCT
ATTACCCTTGGGAGCATCACCACCTGGGATGCTTTGGTCCAGGACTTTTTGAAGAAATTCTTCCCTCCTGCAAAGACGGTCAAGCTGAGGACCGAGATTGGGACATTCCA
ACAACAATATGATGAGGCCTAG
Protein sequenceShow/hide protein sequence
MRNSRELIPLDPEIEGTIHRIRRENREIIHMADQNPPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGLIQMARDCASEDRPPRIQILILNHFWIFDKARDWLQS
ITLGSITTWDALVQDFLKKFFPPAKTVKLRTEIGTFQQQYDEA