; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017896 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017896
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr5:11006248..11006586
RNA-Seq ExpressionLag0017896
SyntenyLag0017896
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142327.1 uncharacterized protein LOC111012468 [Momordica charantia]3.0e-2761.22Show/hide
Query:  THAVQPTSQSVVDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS
        TH V  T  S+++ Y++PYYLHHSD T+LVLVS+LL E+NYTSW ++M+I LTVKNKIGF+DG++ RP+G  + SW ICN+VV AW+LN++SK+I+AS
Subjt:  THAVQPTSQSVVDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS

XP_022152756.1 uncharacterized protein LOC111020399 [Momordica charantia]3.0e-2765.52Show/hide
Query:  VDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS
        ++ YT+PY+LHHSD T+LVLVS+ LT  NYTSW ++M+I LTVKNK+GF+DG++ RPTGDLL SW ICN+VV +WILN++SK+I+AS
Subjt:  VDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS

XP_038874906.1 uncharacterized protein LOC120067409 [Benincasa hispida]3.0e-2766.67Show/hide
Query:  PTSQSVVDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS
        P  QS V  Y+  Y+LHHSD T+LVLVS+LLT+SNY+SW Q+M +  TVKNK+GFIDGTLP+P GDL  SW ICNSVV  WI NA+SK IAAS
Subjt:  PTSQSVVDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS

XP_038887186.1 uncharacterized protein LOC120077373 [Benincasa hispida]2.8e-2562.11Show/hide
Query:  VQPTSQSVVDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS
        V+ +  S ++ Y +PY+LH SD T+LVLVS LLTESNY SW QAM IGLTVKNK+GFI+G +PRP+G+LL SW I N +V  WILN++SK+I AS
Subjt:  VQPTSQSVVDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS

XP_038902375.1 uncharacterized protein LOC120089012 [Benincasa hispida]3.9e-2765.17Show/hide
Query:  SVVDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS
        +V++ YT+ Y+LHHSD TNLV+VS LLTE+NYTSW Q M+IGL VKNK+GF+DG++PR TGDLL SW IC+ VV AWILN++ K+I+ S
Subjt:  SVVDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS

TrEMBL top hitse value%identityAlignment
A0A6J1CMF8 uncharacterized protein LOC1110124681.4e-2761.22Show/hide
Query:  THAVQPTSQSVVDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS
        TH V  T  S+++ Y++PYYLHHSD T+LVLVS+LL E+NYTSW ++M+I LTVKNKIGF+DG++ RP+G  + SW ICN+VV AW+LN++SK+I+AS
Subjt:  THAVQPTSQSVVDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS

A0A6J1DIP8 uncharacterized protein LOC1110203991.4e-2765.52Show/hide
Query:  VDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS
        ++ YT+PY+LHHSD T+LVLVS+ LT  NYTSW ++M+I LTVKNK+GF+DG++ RPTGDLL SW ICN+VV +WILN++SK+I+AS
Subjt:  VDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS

A0A6J1DKR8 uncharacterized protein LOC1110218314.0e-2256.52Show/hide
Query:  TSQSVVDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS
        +S S VD   +PYYLHH+D T LVLV++ LTE NY+SW ++M+I L++KNK+GFIDG++ RP G+LL +W   N VV AWILN++SK+I++S
Subjt:  TSQSVVDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS

A0A6J1DNP7 uncharacterized protein LOC1110220656.7e-2559.14Show/hide
Query:  PTSQSVVDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS
        P +  VV+ + +PY+LHHSD T+LVLVS+LLT+ NYTSW ++++I LTVKNKIGF+DG++ RPT   L SW ICN+VV +WI N++SK I+AS
Subjt:  PTSQSVVDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS

A0A6J1DW89 uncharacterized protein LOC1110237028.2e-2363.41Show/hide
Query:  SPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS
        +PYYLHH+D T LV V++LLTE NYTSW ++MMI L+VKNK+ FIDG +PRP+GDLL +W   N +V AWILN++SK+I+AS
Subjt:  SPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1.0e-0936.11Show/hide
Query:  MADT-HAVQPTSQSVVDLYTSPYYL----HHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPT--GDLLRSWTICNSVVKAWILNA
        MA+T  +V PTS        SPYYL    HH    ++  +S+   E NY +W       L V  K GFIDGTLP+P     L + W  CN++V  W++N+
Subjt:  MADT-HAVQPTSQSVVDLYTSPYYL----HHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPT--GDLLRSWTICNSVVKAWILNA

Query:  ISKDIAAS
        ++  +  S
Subjt:  ISKDIAAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGATACTCATGCTGTTCAACCCACCAGTCAATCCGTCGTGGATTTGTATACCAGCCCCTATTACCTTCACCATTCTGATGGGACGAACCTCGTCCTCGTTTCAGA
ACTCCTCACTGAGTCCAATTATACCTCTTGGTATCAGGCCATGATGATTGGCCTAACTGTGAAAAACAAAATAGGGTTCATCGACGGAACTTTGCCGCGTCCTACCGGAG
ATCTCCTTCGTTCCTGGACGATTTGCAACAGTGTGGTCAAAGCATGGATCCTCAATGCCATTTCCAAAGATATTGCGGCCAGTAACAAAAGGGGAAAAAAGCTAATTGAG
AATAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGATACTCATGCTGTTCAACCCACCAGTCAATCCGTCGTGGATTTGTATACCAGCCCCTATTACCTTCACCATTCTGATGGGACGAACCTCGTCCTCGTTTCAGA
ACTCCTCACTGAGTCCAATTATACCTCTTGGTATCAGGCCATGATGATTGGCCTAACTGTGAAAAACAAAATAGGGTTCATCGACGGAACTTTGCCGCGTCCTACCGGAG
ATCTCCTTCGTTCCTGGACGATTTGCAACAGTGTGGTCAAAGCATGGATCCTCAATGCCATTTCCAAAGATATTGCGGCCAGTAACAAAAGGGGAAAAAAGCTAATTGAG
AATAGTTAG
Protein sequenceShow/hide protein sequence
MADTHAVQPTSQSVVDLYTSPYYLHHSDGTNLVLVSELLTESNYTSWYQAMMIGLTVKNKIGFIDGTLPRPTGDLLRSWTICNSVVKAWILNAISKDIAASNKRGKKLIE
NS