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Lag0017916 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017916
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr5:11613977..11614652
RNA-Seq ExpressionLag0017916
SyntenyLag0017916
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG50019.1 hypothetical protein EZV62_025894 [Acer yangbiense]3.0e-1842.66Show/hide
Query:  LFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVR---LQEGVETFRWCPIQ
        L VL  P+       + F K AFW+ I+KV L  +T  + R LGS+IG V+E+   G  D +G  +RVRVV+DVT+PLR ++R   L +G ET     ++
Subjt:  LFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVR---LQEGVETFRWCPIQ

Query:  YEHLSDFCFRCGCIGHSHHECSAENLSNVPVSL-FLFGDWLCA
        YE L D C+RCG IGH   +CS    S  P     +FG WL A
Subjt:  YEHLSDFCFRCGCIGHSHHECSAENLSNVPVSL-FLFGDWLCA

TXG70618.1 hypothetical protein EZV62_005553 [Acer yangbiense]3.3e-1739.16Show/hide
Query:  LFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVR---LQEGVETFRWCPIQ
        L VLV P        + F + AFWV I++V L  +T  + RALG++IG V+E+   G  D +G  + VRV++D+ +PLR ++R   L++G E+     ++
Subjt:  LFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVR---LQEGVETFRWCPIQ

Query:  YEHLSDFCFRCGCIGHSHHECSAENLSNVPVSL-FLFGDWLCA
        YE L + CFRCG IGH   +CS    S  P     L+G WL A
Subjt:  YEHLSDFCFRCGCIGHSHHECSAENLSNVPVSL-FLFGDWLCA

TXG70623.1 hypothetical protein EZV62_005558 [Acer yangbiense]3.0e-1839.01Show/hide
Query:  LFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVR---LQEGVETFRWCPIQ
        L VLV P        + F + AFWV I++V L  +T  + RALG++IG V+E+   G  D +G  +RVRV++D+ +P+R ++R   L++G E+     ++
Subjt:  LFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVR---LQEGVETFRWCPIQ

Query:  YEHLSDFCFRCGCIGHSHHECSAENLSNVPVSL-FLFGDWL
        YE L + CFRCG IGH   +CS +  S  P     L+G WL
Subjt:  YEHLSDFCFRCGCIGHSHHECSAENLSNVPVSL-FLFGDWL

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]3.3e-2540.71Show/hide
Query:  TLFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVRLQEGVETFRWCPIQYE
        +L VL SP++ + P  ++F  CAFW+ I+ +    ++  M   LG+ +G VEE+ G+G   W GP +RVRV +DV++PLR  ++L+       WCP++YE
Subjt:  TLFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVRLQEGVETFRWCPIQYE

Query:  HLSDFCFRCGCIGHSHHECSAENLSNVPVSLFLFGDWLCA
         L DFC+ CG IGHS  EC   +      S   +GDWL A
Subjt:  HLSDFCFRCGCIGHSHHECSAENLSNVPVSLFLFGDWLCA

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]3.2e-2041.53Show/hide
Query:  TLFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVRLQEGVETFRWCPIQYE
        +L +LV  ++A+ P  ID + CAFWV I+ ++   +T  M + LG+ +G VEEV G    DW+ P + VRV ++V +PLR  ++++       WCP++YE
Subjt:  TLFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVRLQEGVETFRWCPIQYE

Query:  HLSDFCFRCGCIGHSHHE
         L DFC+ CGC+GHS  E
Subjt:  HLSDFCFRCGCIGHSHHE

TrEMBL top hitse value%identityAlignment
A0A5C7GZQ4 CCHC-type domain-containing protein1.5e-1842.66Show/hide
Query:  LFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVR---LQEGVETFRWCPIQ
        L VL  P+       + F K AFW+ I+KV L  +T  + R LGS+IG V+E+   G  D +G  +RVRVV+DVT+PLR ++R   L +G ET     ++
Subjt:  LFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVR---LQEGVETFRWCPIQ

Query:  YEHLSDFCFRCGCIGHSHHECSAENLSNVPVSL-FLFGDWLCA
        YE L D C+RCG IGH   +CS    S  P     +FG WL A
Subjt:  YEHLSDFCFRCGCIGHSHHECSAENLSNVPVSL-FLFGDWLCA

A0A5C7IMP3 CCHC-type domain-containing protein1.5e-1839.01Show/hide
Query:  LFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVR---LQEGVETFRWCPIQ
        L VLV P        + F + AFWV I++V L  +T  + RALG++IG V+E+   G  D +G  +RVRV++D+ +P+R ++R   L++G E+     ++
Subjt:  LFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVR---LQEGVETFRWCPIQ

Query:  YEHLSDFCFRCGCIGHSHHECSAENLSNVPVSL-FLFGDWL
        YE L + CFRCG IGH   +CS +  S  P     L+G WL
Subjt:  YEHLSDFCFRCGCIGHSHHECSAENLSNVPVSL-FLFGDWL

A0A5C7IND8 CCHC-type domain-containing protein1.6e-1739.16Show/hide
Query:  LFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVR---LQEGVETFRWCPIQ
        L VLV P        + F + AFWV I++V L  +T  + RALG++IG V+E+   G  D +G  + VRV++D+ +PLR ++R   L++G E+     ++
Subjt:  LFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVR---LQEGVETFRWCPIQ

Query:  YEHLSDFCFRCGCIGHSHHECSAENLSNVPVSL-FLFGDWLCA
        YE L + CFRCG IGH   +CS    S  P     L+G WL A
Subjt:  YEHLSDFCFRCGCIGHSHHECSAENLSNVPVSL-FLFGDWLCA

A0A6J1D765 uncharacterized protein LOC1110179021.6e-2540.71Show/hide
Query:  TLFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVRLQEGVETFRWCPIQYE
        +L VL SP++ + P  ++F  CAFW+ I+ +    ++  M   LG+ +G VEE+ G+G   W GP +RVRV +DV++PLR  ++L+       WCP++YE
Subjt:  TLFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVRLQEGVETFRWCPIQYE

Query:  HLSDFCFRCGCIGHSHHECSAENLSNVPVSLFLFGDWLCA
         L DFC+ CG IGHS  EC   +      S   +GDWL A
Subjt:  HLSDFCFRCGCIGHSHHECSAENLSNVPVSLFLFGDWLCA

A0A6J1DVS4 uncharacterized protein LOC1110235551.6e-2041.53Show/hide
Query:  TLFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVRLQEGVETFRWCPIQYE
        +L +LV  ++A+ P  ID + CAFWV I+ ++   +T  M + LG+ +G VEEV G    DW+ P + VRV ++V +PLR  ++++       WCP++YE
Subjt:  TLFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDVTRPLRWVVRLQEGVETFRWCPIQYE

Query:  HLSDFCFRCGCIGHSHHE
         L DFC+ CGC+GHS  E
Subjt:  HLSDFCFRCGCIGHSHHE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCTCTCGGAGGAGGAGTCGAAGGCGGTGCCGGTGACGGAGAACGTCCCTCTGCTTGACGACGCAACTGTTCAGGTATGCGCAGTGGGGAATGTTTTGACGACGCT
TTTTGTCCTGGTTTCTCCCTCTAGTGCTGATAGCCCGGCACTCATTGACTTCACAAAGTGTGCCTTTTGGGTGCATATCAATAAGGTATCGTTGAATTTCCTTACTCCTG
CGATGGATCGTGCTCTTGGTAGTGTTATTGGCCTAGTGGAGGAGGTGTCGGGCGAAGGCTACAGGGATTGGATTGGTCCTATCATGAGGGTGCGAGTTGTGTTGGATGTT
ACGAGACCATTGCGTTGGGTGGTACGGTTGCAAGAAGGAGTGGAGACGTTTAGGTGGTGCCCAATTCAGTACGAACATCTTTCGGATTTTTGCTTTAGGTGTGGCTGCAT
TGGCCATTCCCATCACGAGTGCTCTGCTGAAAATTTATCGAATGTGCCTGTGAGCCTTTTCCTTTTTGGGGACTGGCTTTGTGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCTCTCGGAGGAGGAGTCGAAGGCGGTGCCGGTGACGGAGAACGTCCCTCTGCTTGACGACGCAACTGTTCAGGTATGCGCAGTGGGGAATGTTTTGACGACGCT
TTTTGTCCTGGTTTCTCCCTCTAGTGCTGATAGCCCGGCACTCATTGACTTCACAAAGTGTGCCTTTTGGGTGCATATCAATAAGGTATCGTTGAATTTCCTTACTCCTG
CGATGGATCGTGCTCTTGGTAGTGTTATTGGCCTAGTGGAGGAGGTGTCGGGCGAAGGCTACAGGGATTGGATTGGTCCTATCATGAGGGTGCGAGTTGTGTTGGATGTT
ACGAGACCATTGCGTTGGGTGGTACGGTTGCAAGAAGGAGTGGAGACGTTTAGGTGGTGCCCAATTCAGTACGAACATCTTTCGGATTTTTGCTTTAGGTGTGGCTGCAT
TGGCCATTCCCATCACGAGTGCTCTGCTGAAAATTTATCGAATGTGCCTGTGAGCCTTTTCCTTTTTGGGGACTGGCTTTGTGCCTAA
Protein sequenceShow/hide protein sequence
MGLSEEESKAVPVTENVPLLDDATVQVCAVGNVLTTLFVLVSPSSADSPALIDFTKCAFWVHINKVSLNFLTPAMDRALGSVIGLVEEVSGEGYRDWIGPIMRVRVVLDV
TRPLRWVVRLQEGVETFRWCPIQYEHLSDFCFRCGCIGHSHHECSAENLSNVPVSLFLFGDWLCA