; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017923 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017923
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr5:11740313..11741596
RNA-Seq ExpressionLag0017923
SyntenyLag0017923
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ERM93404.1 hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda]5.3e-2466.67Show/hide
Query:  IPEDQVDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDPHLHLKSFLGVSYSFVIQGVSRE
        I +  V+P   ++DR RAI+ YA PMF+ELNPGIVRP+I+A  FE+K +MFQMLQTVGQF G+P EDPHLHL+SFL VS SF IQGVS E
Subjt:  IPEDQVDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDPHLHLKSFLGVSYSFVIQGVSRE

XP_017233063.1 PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus]1.6e-2539.48Show/hide
Query:  MSDPPRVRFELDPEIERTFRRRRREQRR---NINPMDDPLHLPDIPEDQVDPQQN--SNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQML
        MS    V F  DPEIERTF RRR+ QR+       MDD ++  DIP   + P+     +D+ RAI+ YA P F+ELN GI+RP I+A  FE+K +MFQML
Subjt:  MSDPPRVRFELDPEIERTFRRRRREQRR---NINPMDDPLHLPDIPEDQVDPQQN--SNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQML

Query:  QTVGQFHGLPYEDPHLHLKSFLGVSYSFVIQGVSRESASSHDCNISCRRDEVTLLLMKLPVG----WSCVKSLMLSCKVFSSRFKLALTTYVDQVARKQD
        QT+GQF G+P EDPHLHL+ F+ +S SF  QGV  ++        S  RD     L  LP G    W+ +    LS K F       L   ++   ++ D
Subjt:  QTVGQFHGLPYEDPHLHLKSFLGVSYSFVIQGVSRESASSHDCNISCRRDEVTLLLMKLPVG----WSCVKSLMLSCKVFSSRFKLALTTYVDQVARKQD

Query:  LLQVLYVQHDLSQELW-LCIHITYSSCASVLSF
          + LY   +  +EL   C H     C  + +F
Subjt:  LLQVLYVQHDLSQELW-LCIHITYSSCASVLSF

XP_017239618.1 PREDICTED: uncharacterized protein LOC108212402 [Daucus carota subsp. sativus]4.8e-2542Show/hide
Query:  MSDPPRVRFELDPEIERTFRRRRREQRR---NINPMDDPLHLPDIPEDQVDPQQN--SNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQML
        MS+   V F  DPEIERTF RRR+ QR+       M D ++  DIP   V P      +D+ RAI+ YA P F+ELN GI+RP I+A  FE+K +MFQML
Subjt:  MSDPPRVRFELDPEIERTFRRRRREQRR---NINPMDDPLHLPDIPEDQVDPQQN--SNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQML

Query:  QTVGQFHGLPYEDPHLHLKSFLGVSYSFVIQGVSRESASSHDCNISCRRDEVTLLLMKLPVG----WSCVKSLMLSCKVFSSRFKLALTTYVDQVARKQD
        QT+GQF G+P EDPHLHL+ F+ +S SF  QGV  ++        S  RD     L  LP G    W+ +    LS K F       L   ++   ++ D
Subjt:  QTVGQFHGLPYEDPHLHLKSFLGVSYSFVIQGVSRESASSHDCNISCRRDEVTLLLMKLPVG----WSCVKSLMLSCKVFSSRFKLALTTYVDQVARKQD

XP_022929949.1 uncharacterized protein LOC111436411 [Cucurbita moschata]4.3e-2650.36Show/hide
Query:  MSDPPRVRFELDPEIERTFRRRRREQRR----NINPM----------DDPLHLPDIPEDQVDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFE
        M+ P  + F LDPEIERTFRRR +++++    NI  +          ++P  + +      +P   ++DR RAI+AYA P  +ELNP I+RP+I+   FE
Subjt:  MSDPPRVRFELDPEIERTFRRRRREQRR----NINPM----------DDPLHLPDIPEDQVDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFE

Query:  IKSIMFQMLQTVGQFHGLPYEDPHLHLKSFLGVSYSF
        +K +MFQMLQT+GQFHGLP EDPHLHLKSFLGVS SF
Subjt:  IKSIMFQMLQTVGQFHGLPYEDPHLHLKSFLGVSYSF

XP_030508936.1 uncharacterized protein LOC115723589 [Cannabis sativa]2.7e-2857.72Show/hide
Query:  LDPEIERTFRRRRREQR-RNINPMDDPLHLPDIPEDQVDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDP
        +DPEIERTFR+RR+EQ+ +    M D   +  +  ++ +P   ++DR RAI+ YA PMF+ELNPGIVRP+I+A +FE+K +MFQMLQTVGQF G P EDP
Subjt:  LDPEIERTFRRRRREQR-RNINPMDDPLHLPDIPEDQVDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDP

Query:  HLHLKSFLGVSYSFVIQGVSRES
        HLH++SFL VS SF +QGVS E+
Subjt:  HLHLKSFLGVSYSFVIQGVSRES

TrEMBL top hitse value%identityAlignment
A0A6J1EEI2 uncharacterized protein LOC1114333942.4e-2265.82Show/hide
Query:  SNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDPHLHLKSFLGVSYSFVIQGVSRE
        ++DR RAI+AYA P  +ELNP I+RP+++A  FE+K +MFQMLQT+GQFHGLP EDPHLHLKSFLGVS SF  Q V ++
Subjt:  SNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDPHLHLKSFLGVSYSFVIQGVSRE

A0A6J1EQ90 uncharacterized protein LOC1114364112.1e-2650.36Show/hide
Query:  MSDPPRVRFELDPEIERTFRRRRREQRR----NINPM----------DDPLHLPDIPEDQVDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFE
        M+ P  + F LDPEIERTFRRR +++++    NI  +          ++P  + +      +P   ++DR RAI+AYA P  +ELNP I+RP+I+   FE
Subjt:  MSDPPRVRFELDPEIERTFRRRRREQRR----NINPM----------DDPLHLPDIPEDQVDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFE

Query:  IKSIMFQMLQTVGQFHGLPYEDPHLHLKSFLGVSYSF
        +K +MFQMLQT+GQFHGLP EDPHLHLKSFLGVS SF
Subjt:  IKSIMFQMLQTVGQFHGLPYEDPHLHLKSFLGVSYSF

A0A6J1H7E4 uncharacterized protein LOC1114611687.5e-2467.9Show/hide
Query:  QNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDPHLHLKSFLGVSYSFVIQGVSRE
        Q ++DR RAI+AYA P  DELNP I+RP+++A  FE+K +MFQMLQT+GQFHGLP EDPHLHLKSFLGVS SF  QGV ++
Subjt:  QNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDPHLHLKSFLGVSYSFVIQGVSRE

U5CUI2 Retrotrans_gag domain-containing protein2.6e-2466.67Show/hide
Query:  IPEDQVDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDPHLHLKSFLGVSYSFVIQGVSRE
        I +  V+P   ++DR RAI+ YA PMF+ELNPGIVRP+I+A  FE+K +MFQMLQTVGQF G+P EDPHLHL+SFL VS SF IQGVS E
Subjt:  IPEDQVDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDPHLHLKSFLGVSYSFVIQGVSRE

U5CUK7 Uncharacterized protein1.4e-2262.5Show/hide
Query:  DQVDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDPHLHLKSFLGVSYSFVIQGVSRES
        ++ +P   ++DR RAI+ YA PMF+ELN GIVRP+I+A +FE+K +MFQMLQTVGQF G P EDPHLH++SFL VS SF +QGVS E+
Subjt:  DQVDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDPHLHLKSFLGVSYSFVIQGVSRES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGATCCTCCTAGAGTGAGATTCGAACTAGATCCAGAAATTGAAAGGACATTCAGAAGGAGAAGGAGGGAGCAGCGAAGGAACATCAATCCAATGGATGACCCTCT
ACATCTTCCAGATATTCCAGAAGATCAAGTTGATCCCCAGCAAAATTCGAATGATAGGACCAGAGCCATTCAAGCGTATGCTTTCCCGATGTTTGATGAGTTAAATCCAG
GAATTGTGCGTCCTCAAATTGAGGCAGCAAATTTTGAAATAAAATCGATAATGTTTCAGATGTTACAGACCGTGGGTCAATTCCATGGTTTACCATATGAAGACCCCCAT
TTACATCTTAAGTCTTTTCTAGGAGTTAGTTATTCATTTGTGATTCAGGGAGTGTCAAGAGAATCAGCATCGAGTCATGACTGCAACATCAGTTGTCGTCGTGACGAAGT
TACCTTGTTGCTGATGAAGCTTCCTGTAGGTTGGAGTTGTGTTAAGTCGTTGATGCTAAGTTGTAAAGTGTTTAGCTCAAGGTTTAAGCTGGCATTGACAACCTATGTGG
ATCAGGTTGCTCGTAAGCAAGATTTGCTTCAAGTGTTGTATGTTCAACATGACTTGTCTCAAGAGTTGTGGTTATGCATACACATCACCTATTCCTCTTGTGCCTCAGTT
TTAAGCTTTGGGATCCTAGAGGAAATGGTTCGGAAGCTTAACCTGGGTTCATTGGACGAGATGAGATCAGGGAGCGCATCGAGCCTGTTGCTTACAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGATCCTCCTAGAGTGAGATTCGAACTAGATCCAGAAATTGAAAGGACATTCAGAAGGAGAAGGAGGGAGCAGCGAAGGAACATCAATCCAATGGATGACCCTCT
ACATCTTCCAGATATTCCAGAAGATCAAGTTGATCCCCAGCAAAATTCGAATGATAGGACCAGAGCCATTCAAGCGTATGCTTTCCCGATGTTTGATGAGTTAAATCCAG
GAATTGTGCGTCCTCAAATTGAGGCAGCAAATTTTGAAATAAAATCGATAATGTTTCAGATGTTACAGACCGTGGGTCAATTCCATGGTTTACCATATGAAGACCCCCAT
TTACATCTTAAGTCTTTTCTAGGAGTTAGTTATTCATTTGTGATTCAGGGAGTGTCAAGAGAATCAGCATCGAGTCATGACTGCAACATCAGTTGTCGTCGTGACGAAGT
TACCTTGTTGCTGATGAAGCTTCCTGTAGGTTGGAGTTGTGTTAAGTCGTTGATGCTAAGTTGTAAAGTGTTTAGCTCAAGGTTTAAGCTGGCATTGACAACCTATGTGG
ATCAGGTTGCTCGTAAGCAAGATTTGCTTCAAGTGTTGTATGTTCAACATGACTTGTCTCAAGAGTTGTGGTTATGCATACACATCACCTATTCCTCTTGTGCCTCAGTT
TTAAGCTTTGGGATCCTAGAGGAAATGGTTCGGAAGCTTAACCTGGGTTCATTGGACGAGATGAGATCAGGGAGCGCATCGAGCCTGTTGCTTACAGGTTGA
Protein sequenceShow/hide protein sequence
MSDPPRVRFELDPEIERTFRRRRREQRRNINPMDDPLHLPDIPEDQVDPQQNSNDRTRAIQAYAFPMFDELNPGIVRPQIEAANFEIKSIMFQMLQTVGQFHGLPYEDPH
LHLKSFLGVSYSFVIQGVSRESASSHDCNISCRRDEVTLLLMKLPVGWSCVKSLMLSCKVFSSRFKLALTTYVDQVARKQDLLQVLYVQHDLSQELWLCIHITYSSCASV
LSFGILEEMVRKLNLGSLDEMRSGSASSLLLTG