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Lag0017928 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017928
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionpeptide chain release factor PrfB2, chloroplastic
Genome locationchr5:11815365..11816736
RNA-Seq ExpressionLag0017928
SyntenyLag0017928
Gene Ontology termsGO:0006415 - translational termination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016149 - translation release factor activity, codon specific (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135582.1 peptide chain release factor PrfB2, chloroplastic [Cucumis sativus]1.0e-4685Show/hide
Query:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK
        T  +  TQ+A EPST DGLTVEGI+GNRWTILDESESDWRS+AAAIAQSI LIK RL+WKKLMMRLELLSVELNK DLWDD AHAGKISREHGSIM KIK
Subjt:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK

Query:  EIIKAFERELLEHIDMIKLA
        E I AFERELLEHIDMIKLA
Subjt:  EIIKAFERELLEHIDMIKLA
XP_016900916.1 PREDICTED: peptide chain release factor PrfB2, chloroplastic [Cucumis melo]5.9e-4785Show/hide
Query:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK
        T  +  TQ+A+EPST DGLTVEGI+GNRWTILDESESDWRS+AAAIAQSI LIK RL+WKKLMMRLELLSVELNK DLWDD AHAGKISREHGSIM KIK
Subjt:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK

Query:  EIIKAFERELLEHIDMIKLA
        E I AFERELLEHIDMIKLA
Subjt:  EIIKAFERELLEHIDMIKLA
XP_022931672.1 peptide chain release factor PrfB2, chloroplastic [Cucurbita moschata]1.8e-4888.33Show/hide
Query:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK
        T  +  TQVAIEPST DGLTVEGIIGNRWTIL+ESESDWRS+AAAIAQSI LIK RL+WKKLMMRLELLSVELNK DLWDD AHAGKISREHGSIMGKIK
Subjt:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK

Query:  EIIKAFERELLEHIDMIKLA
        E IKAFERELLEHIDMIKLA
Subjt:  EIIKAFERELLEHIDMIKLA
XP_022989394.1 peptide chain release factor PrfB2, chloroplastic [Cucurbita maxima]4.1e-4887.5Show/hide
Query:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK
        T  +  TQVAIEPST DGLTVEGIIGNRWTIL+ESESDWRS+AAAIAQSI LIK RL+WKKLMMRLELLSVELNK DLWDD AHAGKISREHGSIMGKIK
Subjt:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK

Query:  EIIKAFERELLEHIDMIKLA
        E +KAFERELLEHIDMIKLA
Subjt:  EIIKAFERELLEHIDMIKLA
XP_023531900.1 peptide chain release factor PrfB2, chloroplastic [Cucurbita pepo subsp. pepo]2.4e-4892.11Show/hide
Query:  TQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIKEIIKAF
        TQVAIEPST DGLTVEGIIGNRWTIL+ESESDWRS+AAAIAQSI LIK RL+WKKLMMRLELLSVELNK DLWDD AHAGKISREHGSIMGKIKE IKAF
Subjt:  TQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIKEIIKAF

Query:  ERELLEHIDMIKLA
        ERELLEHIDMIKLA
Subjt:  ERELLEHIDMIKLA
TrEMBL top hitse value%identityAlignment
A0A0A0LVX3 RF_PROK_I domain-containing protein4.9e-4785Show/hide
Query:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK
        T  +  TQ+A EPST DGLTVEGI+GNRWTILDESESDWRS+AAAIAQSI LIK RL+WKKLMMRLELLSVELNK DLWDD AHAGKISREHGSIM KIK
Subjt:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK

Query:  EIIKAFERELLEHIDMIKLA
        E I AFERELLEHIDMIKLA
Subjt:  EIIKAFERELLEHIDMIKLA
A0A1S4DY60 peptide chain release factor PrfB2, chloroplastic2.9e-4785Show/hide
Query:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK
        T  +  TQ+A+EPST DGLTVEGI+GNRWTILDESESDWRS+AAAIAQSI LIK RL+WKKLMMRLELLSVELNK DLWDD AHAGKISREHGSIM KIK
Subjt:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK

Query:  EIIKAFERELLEHIDMIKLA
        E I AFERELLEHIDMIKLA
Subjt:  EIIKAFERELLEHIDMIKLA
A0A5D3CEK4 Peptide chain release factor PrfB22.9e-4785Show/hide
Query:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK
        T  +  TQ+A+EPST DGLTVEGI+GNRWTILDESESDWRS+AAAIAQSI LIK RL+WKKLMMRLELLSVELNK DLWDD AHAGKISREHGSIM KIK
Subjt:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK

Query:  EIIKAFERELLEHIDMIKLA
        E I AFERELLEHIDMIKLA
Subjt:  EIIKAFERELLEHIDMIKLA
A0A6J1EUC0 peptide chain release factor PrfB2, chloroplastic8.9e-4988.33Show/hide
Query:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK
        T  +  TQVAIEPST DGLTVEGIIGNRWTIL+ESESDWRS+AAAIAQSI LIK RL+WKKLMMRLELLSVELNK DLWDD AHAGKISREHGSIMGKIK
Subjt:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK

Query:  EIIKAFERELLEHIDMIKLA
        E IKAFERELLEHIDMIKLA
Subjt:  EIIKAFERELLEHIDMIKLA
A0A6J1JP75 peptide chain release factor PrfB2, chloroplastic2.0e-4887.5Show/hide
Query:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK
        T  +  TQVAIEPST DGLTVEGIIGNRWTIL+ESESDWRS+AAAIAQSI LIK RL+WKKLMMRLELLSVELNK DLWDD AHAGKISREHGSIMGKIK
Subjt:  TAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIK

Query:  EIIKAFERELLEHIDMIKLA
        E +KAFERELLEHIDMIKLA
Subjt:  EIIKAFERELLEHIDMIKLA
SwissProt top hitse value%identityAlignment
F4I532 Peptide chain release factor PrfB2, chloroplastic4.4e-3766.38Show/hide
Query:  LLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIKEIIK
        L ++     +T DGLTVE II N+W ILDE+E DW+S+AAAIAQSI +IK RL+WKKL++RL++LS ELNK DLWDD  HAGKISREHGS+ GK+K ++ 
Subjt:  LLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIKEIIK

Query:  AFERELLEHIDMIKLA
         FERELLEHIDM+KLA
Subjt:  AFERELLEHIDMIKLA
Arabidopsis top hitse value%identityAlignment
AT1G56350.1 Peptide chain release factor 23.1e-3866.38Show/hide
Query:  LLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIKEIIK
        L ++     +T DGLTVE II N+W ILDE+E DW+S+AAAIAQSI +IK RL+WKKL++RL++LS ELNK DLWDD  HAGKISREHGS+ GK+K ++ 
Subjt:  LLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGKIKEIIK

Query:  AFERELLEHIDMIKLA
         FERELLEHIDM+KLA
Subjt:  AFERELLEHIDMIKLA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGAGGTTGTATGTCTTAAGGCGGTGGCGGCGCCGATCGGTTCTGAGGACAGCAGCGACGTGTGGCTGTTTGGTTGCAAAGGAACTCATGGCGGCGACAATGTGAG
ACGGCATGCGGCAGCAGCGTGGGAGAGAGAGTTGCGACGCTCGGAGACGGAGAACGGAGAGAGAGAGAAACGGGTTGGAGAGAGAGACGAAAACGAGAGAGAGAGAGAGA
ACGAGTGCTCACCGGCAGCGAACGGCGATGGCAGTGGCGGCAGCACTGCGAGGCGGTTTGCAGAGAGAGAGAGCGTGAGGGAGAGGGAGCCGAGAGAGAGAGAGAAAGCG
GTTGCCATACCGATCCAACAAGATGATGAGATCTGGACGGCGGGCGTGCTCCTCACACAGGTGGCGATTGAGCCTTCAACAATCGATGGGCTTACGGTCGAAGGAATAAT
TGGAAATCGATGGACAATTCTTGACGAGAGCGAGAGCGATTGGAGAAGCTATGCTGCTGCAATTGCCCAATCCATTTGTCTGATCAAGAACCGTTTAGAGTGGAAGAAGT
TGATGATGAGATTAGAGTTGTTGTCGGTGGAGTTGAACAAGGTTGATTTGTGGGATGATGTTGCACATGCAGGGAAGATAAGTCGGGAGCATGGTTCAATTATGGGTAAG
ATTAAAGAGATCATCAAAGCATTTGAGAGAGAGTTGCTTGAGCATATCGACATGATAAAGCTTGCTAGTGCGGGAGAGAGACCGATCTTGAAAAACCCAGATCTGGAAAA
ATAA
mRNA sequenceShow/hide mRNA sequence
ATGCGTGAGGTTGTATGTCTTAAGGCGGTGGCGGCGCCGATCGGTTCTGAGGACAGCAGCGACGTGTGGCTGTTTGGTTGCAAAGGAACTCATGGCGGCGACAATGTGAG
ACGGCATGCGGCAGCAGCGTGGGAGAGAGAGTTGCGACGCTCGGAGACGGAGAACGGAGAGAGAGAGAAACGGGTTGGAGAGAGAGACGAAAACGAGAGAGAGAGAGAGA
ACGAGTGCTCACCGGCAGCGAACGGCGATGGCAGTGGCGGCAGCACTGCGAGGCGGTTTGCAGAGAGAGAGAGCGTGAGGGAGAGGGAGCCGAGAGAGAGAGAGAAAGCG
GTTGCCATACCGATCCAACAAGATGATGAGATCTGGACGGCGGGCGTGCTCCTCACACAGGTGGCGATTGAGCCTTCAACAATCGATGGGCTTACGGTCGAAGGAATAAT
TGGAAATCGATGGACAATTCTTGACGAGAGCGAGAGCGATTGGAGAAGCTATGCTGCTGCAATTGCCCAATCCATTTGTCTGATCAAGAACCGTTTAGAGTGGAAGAAGT
TGATGATGAGATTAGAGTTGTTGTCGGTGGAGTTGAACAAGGTTGATTTGTGGGATGATGTTGCACATGCAGGGAAGATAAGTCGGGAGCATGGTTCAATTATGGGTAAG
ATTAAAGAGATCATCAAAGCATTTGAGAGAGAGTTGCTTGAGCATATCGACATGATAAAGCTTGCTAGTGCGGGAGAGAGACCGATCTTGAAAAACCCAGATCTGGAAAA
ATAA
Protein sequenceShow/hide protein sequence
MREVVCLKAVAAPIGSEDSSDVWLFGCKGTHGGDNVRRHAAAAWERELRRSETENGEREKRVGERDENERERENECSPAANGDGSGGSTARRFAERESVREREPREREKA
VAIPIQQDDEIWTAGVLLTQVAIEPSTIDGLTVEGIIGNRWTILDESESDWRSYAAAIAQSICLIKNRLEWKKLMMRLELLSVELNKVDLWDDVAHAGKISREHGSIMGK
IKEIIKAFERELLEHIDMIKLASAGERPILKNPDLEK