; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017930 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017930
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr5:11831951..11832784
RNA-Seq ExpressionLag0017930
SyntenyLag0017930
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PNX96792.1 ribonuclease H, partial [Trifolium pratense]3.3e-3537.5Show/hide
Query:  LFRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPIRFEESWINFDEY
        LFR  ++SC+L DLG   N +TW+ K +    I  RLDRFLA +   TLF      H  R+  DH PI+ + N  +G   K    KPIR+E+ W     +
Subjt:  LFRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPIRFEESWINFDEY

Query:  RDIIRSHWHWPNLKPKDFMGKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQNDNEMLRI-NEIRTAEMELDKLLDEEEIYWKTRSKEDWLKWEDQ
          I++ +W   N +   F  K+T  L  L +W N ++ G +   I   +V+L++L   N    + N+IR  E ELD +L+ EE +WK RS+E WL   D+
Subjt:  RDIIRSHWHWPNLKPKDFMGKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQNDNEMLRI-NEIRTAEMELDKLLDEEEIYWKTRSKEDWLKWEDQ

Query:  NTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFS
        NTK+FH KAN  R  N+I  I D++G    EE E+ +V  D++  +F+
Subjt:  NTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFS

XP_010682492.1 PREDICTED: uncharacterized protein LOC104897331 [Beta vulgaris subsp. vulgaris]2.2e-3134.65Show/hide
Query:  MDLFRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPIRFEESWINFD
        +D FR+ +  C+L DLG   +PFTW R +  A  I ERLDRFLA+ +  TLF   S+ H   +  DH P++ + + R    ++   +K   FE  W++  
Subjt:  MDLFRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPIRFEESWINFD

Query:  EYRDIIRSHWHWPNLKPKDFMGKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQND-NEMLRINEIRTAEMELDKLLDEEEIYWKTRSKEDWLKWE
        E  D++RS   W +   +    ++  C ++L  W      G LK  + RKE EL+  Q+   +   +++ R    ELD+L   EE YW  R++ + L+  
Subjt:  EYRDIIRSHWHWPNLKPKDFMGKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQND-NEMLRINEIRTAEMELDKLLDEEEIYWKTRSKEDWLKWE

Query:  DQNTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFSTSDP
        D+NT +FH KA+  ++ N IL + D  G    EEEE+G + +DY+++MFS+S P
Subjt:  DQNTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFSTSDP

XP_023908235.1 uncharacterized protein LOC112019924 [Quercus suber]2.2e-3133.81Show/hide
Query:  MDLFRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPIRFEESWINFD
        +D FR  +DSC+L DLG     +TWS K   A     RLDR +AT      F   ++ H   H  DH PI+ ++  ++    ++  +K  +FEE+W+ ++
Subjt:  MDLFRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPIRFEESWINFD

Query:  EYRDIIRSHWH---WPNLKPKDFMGKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQNDNEMLRINEIRTAE---------MELDKLLDEEEIYWK
        +  ++++  W       L       KI  C  +L+ W + K   +        EV +K LQN  E+L   E+ T E          +LD LL ++EIYW 
Subjt:  EYRDIIRSHWH---WPNLKPKDFMGKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQNDNEMLRINEIRTAE---------MELDKLLDEEEIYWK

Query:  TRSKEDWLKWEDQNTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMF--STSDPCQWAMNRRTLEVSP
         RS+  WLK  D+NTK+FHSKA+Q R+ N I GI   +G+W EE EE+  VAT Y+ ++F     D  +  +N    +V+P
Subjt:  TRSKEDWLKWEDQNTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMF--STSDPCQWAMNRRTLEVSP

XP_024037590.1 uncharacterized protein LOC112097210 [Citrus clementina]8.6e-3632.05Show/hide
Query:  FRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRN--GDHKKEGRRKPIRFEESWINFDE
        FR+ ++ CNLIDLGC   PFTWS +    + I ERLDRFL + +       + + + +    DH P++  + +RN    +KK    + + +E+ W +++ 
Subjt:  FRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRN--GDHKKEGRRKPIRFEESWINFDE

Query:  YRDIIRSHW----HWPNLKPKDFMGKIT-GCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQNDNEMLRINEIRTAEMELDKLLDEEEIYWKTRSKEDWL
         ++I++  W     W    P     K +  CL +LR W+  + +G  +     K+   ++  N  +   ++EI++ E +++K+L +EE+YWK RS+ DWL
Subjt:  YRDIIRSHW----HWPNLKPKDFMGKIT-GCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQNDNEMLRINEIRTAEMELDKLLDEEEIYWKTRSKEDWL

Query:  KWEDQNTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFSTSDPCQ
        K  D+NTK+FHSKA+  ++ NRI G++D    W ++ E + +   +Y++S+F+TS P +
Subjt:  KWEDQNTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFSTSDPCQ

XP_030924745.1 uncharacterized protein LOC115951731 [Quercus lobata]1.6e-3435.88Show/hide
Query:  MDLFRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPIRFEESWINFD
        M LFR A+D C L DLG    PFTW  +   A  +  RLDR +AT   +  F    I H +  + DHKPI+   +       + GR  P RFE  W+  D
Subjt:  MDLFRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPIRFEESWINFD

Query:  EYRDIIRSHWHWPNLKPK--DFMGKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQND----NEMLRINEIRTAEMELDKLLDEEEIYWKTRSKED
            +I+  W    L      F  K+      L+ WN     G ++ ++A+K  ELKV++      ++  R+  +RT   E+++L  +EE  WK RS+  
Subjt:  EYRDIIRSHWHWPNLKPK--DFMGKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQND----NEMLRINEIRTAEMELDKLLDEEEIYWKTRSKED

Query:  WLKWEDQNTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFSTSDPCQW
        WLK  D+NT +FH +A Q  K N ILG+ D  G W ++EE++GRV  DY+ +MF++S+P Q+
Subjt:  WLKWEDQNTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFSTSDPCQW

TrEMBL top hitse value%identityAlignment
A0A2K3N196 Ribonuclease H (Fragment)1.6e-3537.5Show/hide
Query:  LFRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPIRFEESWINFDEY
        LFR  ++SC+L DLG   N +TW+ K +    I  RLDRFLA +   TLF      H  R+  DH PI+ + N  +G   K    KPIR+E+ W     +
Subjt:  LFRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPIRFEESWINFDEY

Query:  RDIIRSHWHWPNLKPKDFMGKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQNDNEMLRI-NEIRTAEMELDKLLDEEEIYWKTRSKEDWLKWEDQ
          I++ +W   N +   F  K+T  L  L +W N ++ G +   I   +V+L++L   N    + N+IR  E ELD +L+ EE +WK RS+E WL   D+
Subjt:  RDIIRSHWHWPNLKPKDFMGKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQNDNEMLRI-NEIRTAEMELDKLLDEEEIYWKTRSKEDWLKWEDQ

Query:  NTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFS
        NTK+FH KAN  R  N+I  I D++G    EE E+ +V  D++  +F+
Subjt:  NTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFS

A0A2N9ESV7 Uncharacterized protein6.3e-3233.21Show/hide
Query:  FRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPIRFEESWINFDEYR
        FR  I +C+LID+G    P+TW+       ++ ERLDR LAT+  +TLFG     H      DH  I  + ++     +K  R+   RFEE W    E  
Subjt:  FRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPIRFEESWINFDEYR

Query:  DIIRSHWHWPNLKPKDFM---GKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQNDN-EMLRINEIRTAEMELDKLLDEEEIYWKTRSKEDWLKWE
         +I + W    L          KI  C   L KW      GS+K  + +K+ E++ L + N +      I   + E+++LL ++E++W+ RS+  WL+  
Subjt:  DIIRSHWHWPNLKPKDFM---GKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQNDN-EMLRINEIRTAEMELDKLLDEEEIYWKTRSKEDWLKWE

Query:  DQNTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFSTSDPCQWAMNRRTLE
        D+NTK+FH KA Q R+ N I G+LD+   W E+ + +GR+  +Y+S MF+++  CQ  +   TL+
Subjt:  DQNTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFSTSDPCQWAMNRRTLE

A0A2N9EUS3 Reverse transcriptase domain-containing protein6.3e-3233.21Show/hide
Query:  FRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPIRFEESWINFDEYR
        FR  I +C+LID+G    P+TW+       ++ ERLDR LAT+  +TLFG     H      DH  I  + ++     +K  R+   RFEE W    E  
Subjt:  FRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPIRFEESWINFDEYR

Query:  DIIRSHWHWPNLKPKDFM---GKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQNDN-EMLRINEIRTAEMELDKLLDEEEIYWKTRSKEDWLKWE
         +I + W    L          KI  C   L KW      GS+K  + +K+ E++ L + N +      I   + E+++LL ++E++W+ RS+  WL+  
Subjt:  DIIRSHWHWPNLKPKDFM---GKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQNDN-EMLRINEIRTAEMELDKLLDEEEIYWKTRSKEDWLKWE

Query:  DQNTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFSTSDPCQWAMNRRTLE
        D+NTK+FH KA Q R+ N I G+LD+   W E+ + +GR+  +Y+S MF+++  CQ  +   TL+
Subjt:  DQNTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFSTSDPCQWAMNRRTLE

A0A2N9F775 Reverse transcriptase domain-containing protein4.3e-3336.76Show/hide
Query:  FRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPI-RFEESWINFDEY
        F++A+++ NL+DLG     +TW+    +A  I  RLDR LAT+  +  F   S+ H      DH  ++     +   H+   RRK I RFEE W      
Subjt:  FRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPI-RFEESWINFDEY

Query:  RDIIRSHWHWP---NLKPKDFMGKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQNDNEMLRIN-EIRTAEMELDKLLDEEEIYWKTRSKEDWLKW
         +IIRS W+              KI+ C + L  WN  K+ G+L   +  K   L+ L  DN   + N +IR  + E++ LL ++EI+W+ RS+E WL+ 
Subjt:  RDIIRSHWHWP---NLKPKDFMGKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQNDNEMLRIN-EIRTAEMELDKLLDEEEIYWKTRSKEDWLKW

Query:  EDQNTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFSTS
         D+NTK+FH KA Q R  N I GILD+ G W E+E+ MG +A  Y++ +FS+S
Subjt:  EDQNTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFSTS

A0A2N9HK89 Uncharacterized protein1.6e-3233.59Show/hide
Query:  MDLFRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPIRFEESWINFD
        M  FR+ +D C ++DLG   +PFTW            RLDR +A+ + +  F    + H N  N DHK +   L   N   + +  RKP RFEE W   D
Subjt:  MDLFRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPIRFEESWINFD

Query:  EYRDIIRSHWHWPNLKPKDFM--GKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQNDN-EMLRINEIRTAEMELDKLLDEEEIYWKTRSKEDWLK
           D I++ W    +  + F    K+  C   L KW+     G++   +A K  +L V + D  +   ++ +++ + +++ LL++EE  W+ RS+  WLK
Subjt:  EYRDIIRSHWHWPNLKPKDFM--GKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQNDN-EMLRINEIRTAEMELDKLLDEEEIYWKTRSKEDWLK

Query:  WEDQNTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFSTSDP
          D+NT++FH +A+Q R+ NRI+G+ +N+G W EE+EEM  +   YY ++F+TS P
Subjt:  WEDQNTKWFHSKANQSRKVNRILGILDNKGDWTEEEEEMGRVATDYYSSMFSTSDP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTCTTCAGGAAGGCTATTGACAGCTGCAATCTAATCGATTTGGGTTGTGGGGACAACCCTTTTACGTGGAGTAGAAAGGACAAAGAGGCTAGGTACATCCACGA
AAGGCTTGACAGATTTTTAGCCACGAACAATCTAGTGACGTTGTTTGGAGAGATCTCCATAGGCCACTCTAATAGACATAATTTGGACCACAAGCCTATTATCGCCAACC
TCAACCAAAGAAATGGTGATCATAAGAAAGAGGGGAGAAGAAAACCGATCAGATTTGAGGAGTCTTGGATAAATTTTGATGAATACAGGGACATTATTAGAAGCCATTGG
CATTGGCCTAACTTGAAACCGAAGGATTTTATGGGGAAGATTACTGGTTGTTTAATTAAGCTGAGAAAGTGGAACAACCTTAAACTTAATGGTTCCTTGAAGGCTGCAAT
AGCTAGAAAGGAAGTTGAGTTGAAAGTGTTACAAAATGACAATGAGATGTTAAGAATAAATGAGATAAGGACGGCTGAAATGGAGCTTGATAAGTTGCTGGATGAAGAAG
AAATTTATTGGAAAACCCGTTCGAAGGAAGATTGGCTTAAGTGGGAAGATCAAAACACCAAGTGGTTTCACTCAAAAGCTAATCAGAGCAGGAAAGTTAACAGAATCTTG
GGCATCCTCGACAACAAAGGAGATTGGACAGAAGAGGAGGAAGAGATGGGGAGAGTAGCAACTGATTACTATTCGTCAATGTTCTCAACGTCGGATCCTTGTCAATGGGC
TATGAATAGAAGAACTCTGGAGGTTTCACCTCCAGGATATCAAGTGCCCAAAGCATTGAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCTCTTCAGGAAGGCTATTGACAGCTGCAATCTAATCGATTTGGGTTGTGGGGACAACCCTTTTACGTGGAGTAGAAAGGACAAAGAGGCTAGGTACATCCACGA
AAGGCTTGACAGATTTTTAGCCACGAACAATCTAGTGACGTTGTTTGGAGAGATCTCCATAGGCCACTCTAATAGACATAATTTGGACCACAAGCCTATTATCGCCAACC
TCAACCAAAGAAATGGTGATCATAAGAAAGAGGGGAGAAGAAAACCGATCAGATTTGAGGAGTCTTGGATAAATTTTGATGAATACAGGGACATTATTAGAAGCCATTGG
CATTGGCCTAACTTGAAACCGAAGGATTTTATGGGGAAGATTACTGGTTGTTTAATTAAGCTGAGAAAGTGGAACAACCTTAAACTTAATGGTTCCTTGAAGGCTGCAAT
AGCTAGAAAGGAAGTTGAGTTGAAAGTGTTACAAAATGACAATGAGATGTTAAGAATAAATGAGATAAGGACGGCTGAAATGGAGCTTGATAAGTTGCTGGATGAAGAAG
AAATTTATTGGAAAACCCGTTCGAAGGAAGATTGGCTTAAGTGGGAAGATCAAAACACCAAGTGGTTTCACTCAAAAGCTAATCAGAGCAGGAAAGTTAACAGAATCTTG
GGCATCCTCGACAACAAAGGAGATTGGACAGAAGAGGAGGAAGAGATGGGGAGAGTAGCAACTGATTACTATTCGTCAATGTTCTCAACGTCGGATCCTTGTCAATGGGC
TATGAATAGAAGAACTCTGGAGGTTTCACCTCCAGGATATCAAGTGCCCAAAGCATTGAGCTAG
Protein sequenceShow/hide protein sequence
MDLFRKAIDSCNLIDLGCGDNPFTWSRKDKEARYIHERLDRFLATNNLVTLFGEISIGHSNRHNLDHKPIIANLNQRNGDHKKEGRRKPIRFEESWINFDEYRDIIRSHW
HWPNLKPKDFMGKITGCLIKLRKWNNLKLNGSLKAAIARKEVELKVLQNDNEMLRINEIRTAEMELDKLLDEEEIYWKTRSKEDWLKWEDQNTKWFHSKANQSRKVNRIL
GILDNKGDWTEEEEEMGRVATDYYSSMFSTSDPCQWAMNRRTLEVSPPGYQVPKALS